RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PBX3P40426 434 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 USP11P51784 963 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 POLGP54098 1239 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 BCAR1P56945 870 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 ADCK5Q3MIX3 580 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 PLCD3Q8N3E9 789 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 HELQQ8TDG4 1101 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 LENG9Q96B70 501 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 TRAIPQ9BWF2 469 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 GCOM2Q9BZD3 368 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 INO80BQ9C086 356 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 POMKQ9H5K3 350 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 USTQ9Y2C2 406 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 IRAK3Q9Y616 596 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 PROB1E7EW31 1015 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 CXCL14O95715 111 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 SFPQP23246 707 aaKnown RBP eCLIP16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 SP100P23497 879 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 CA8P35219 290 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 RASEFQ8IZ41 740 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 ZDHHC14Q8IZN3 488 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 TDRD5Q8NAT2 981 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 SNX27Q96L92 541 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 TEKT3Q9BXF9 490 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 C22orf23Q9BZE7 217 aa16.65■□□□□ 0.26
CCDC88B-201ENST00000301897 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 C2CD4DB7Z1M9 353 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 MSH4O15457 936 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 RAB27AP51159 221 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 ATAT1Q5SQI0 421 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 LRCH2Q5VUJ6 765 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 KIAA1841Q6NSI8 718 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 GLB1LQ6UWU2 654 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 DDX53Q86TM3 631 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 ZNF410Q86VK4 478 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 PPFIBP1Q86W92 1011 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 VPS52Q8N1B4 723 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 CCDC136Q96JN2 1154 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 RNF26Q9BY78 433 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 ZBP1Q9H171 429 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 FAM86C1Q9NVL1 165 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 MYO15AQ9UKN7 3530 aa16.64■□□□□ 0.25
CCDC88B-201ENST00000301897 ZC3H11AO75152 810 aaKnown RBP eCLIP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 PHKA2P46019 1235 aa16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 TARBP2Q15633 366 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 XKR3Q5GH77 459 aa16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 RARS2Q5T160 578 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 TWF2Q6IBS0 349 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 FBXL16Q8N461 479 aa16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 SLC5A5Q92911 643 aa16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 JPH2Q9BR39 696 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 NIFKQ9BYG3 293 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 SH3GLB2Q9NR46 395 aa16.63■□□□□ 0.25
CCDC88B-201ENST00000301897 BRD1O95696 1058 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 PDGFBP01127 241 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 CTSAP10619 480 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 FOXK2Q01167 660 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 RNASELQ05823 741 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 NOMO2Q5JPE7 1267 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 ASTLQ6HA08 431 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 MIER3Q7Z3K6 550 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 BRF1Q92994 677 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 ACSF2Q96CM8 615 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 IGSF21Q96ID5 467 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 ZNF668Q96K58 619 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 DBR1Q9UK59 544 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 WDR87Q6ZQQ6 2873 aa16.62■□□□□ 0.25
CCDC88B-201ENST00000301897 NT5C1B-RDH14C9J2C7 533 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 H0Y858 1186 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 CHMP2AO43633 222 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 ZNF623O75123 536 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 IFNAR1P17181 557 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 FGFR4P22455 802 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 CLCN5P51795 746 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 UGCGQ16739 394 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 BLOC1S2Q6QNY1 142 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 Q6ZUG5 572 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 CABP7Q86V35 215 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 EXOC8Q8IYI6 725 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 PGBD4Q96DM1 585 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 UNC45AQ9H3U1 944 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 MFSD1Q9H3U5 465 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 CYP26B1Q9NR63 512 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 SEPT9Q9UHD8 586 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 PIN4Q9Y237 131 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 GVINP1Q7Z2Y8 2422 aa16.61■□□□□ 0.25
CCDC88B-201ENST00000301897 IGKV6-21A0A0C4DH24 114 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 ADAMTS3O15072 1205 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 CDC45O75419 566 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 PSMD10O75832 226 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 NBL1P41271 181 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 MTERF2Q49AM1 385 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 Q4G0T1 1027 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 OTOP3Q7RTS5 596 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 FAM177A1Q8N128 213 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 URGCPQ8TCY9 931 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 KCNB2Q92953 911 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 PHKBQ93100 1093 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 EMILIN2Q9BXX0 1053 aa16.6■□□□□ 0.25
CCDC88B-201ENST00000301897 SFXN1Q9H9B4 322 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms