RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PITPNM3Q9BZ71 974 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PRR23D1E9PI22 279 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PRR23D2P0DMB1 279 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 SLFN13Q68D06 897 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PPP1R2P3Q6NXS1 205 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 MRPL40Q9NQ50 206 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 TUBE1Q9UJT0 475 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 LRRN2O75325 713 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CYP27A1Q02318 531 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC15Q0P6D6 951 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ALCAMQ13740 583 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 TAF1BQ53T94 588 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ODR4Q5SWX8 454 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 C1orf167Q5SNV9 1468 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CASZ1Q86V15 1759 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 KRT75O95678 551 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 HSPA4LO95757 839 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ACAD11Q709F0 780 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC127Q96BQ5 260 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 DIS3Q9Y2L1 958 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ORC4O43929 436 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ZBED4O75132 1171 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PDCLQ13371 301 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CAPRIN1Q14444 709 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 EPM2AIP1Q7L775 607 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 UBR1Q8IWV7 1749 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 SLC38A10Q9HBR0 1119 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 MAGED2Q9UNF1 606 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 TMED10P49755 219 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 MFAP3P55082 362 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 MAP3K10Q02779 954 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ANO5Q75V66 913 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC24Q8N4L8 307 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 SUN2Q9UH99 717 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 FTCDO95954 541 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PRPF38AQ8NAV1 312 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 TBC1D23Q9NUY8 699 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 APOBEC2Q9Y235 224 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 SERPINB2P05120 415 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 PRCPP42785 496 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 TRIM28Q13263 835 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 ABCB5Q2M3G0 1257 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 CEP55Q53EZ4 464 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 NLRX1Q86UT6 975 aa10.53□□□□□ -0.72
COL6A3-201ENST00000295550 NAF1Q96HR8 494 aaKnown RBP10.53□□□□□ -0.72
COL6A3-201ENST00000295550 EIF4E1BA6NMX2 242 aaKnown RBP10.52□□□□□ -0.72
COL6A3-201ENST00000295550 DYNLL2Q96FJ2 89 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 THOC1Q96FV9 657 aaKnown RBP10.52□□□□□ -0.72
COL6A3-201ENST00000295550 FAM81BQ96LP2 452 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 TGS1Q96RS0 853 aaKnown RBP10.52□□□□□ -0.72
COL6A3-201ENST00000295550 RPS6KC1Q96S38 1066 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 ELAC2Q9BQ52 826 aaKnown RBP10.52□□□□□ -0.72
COL6A3-201ENST00000295550 MID2Q9UJV3 735 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 MYH13Q9UKX3 1938 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 TMEM191BP0C7N4 346 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 GGCXP38435 758 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 RAD23BP54727 409 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 KCNB1Q14721 858 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 CENPUQ71F23 418 aa10.52□□□□□ -0.72
COL6A3-201ENST00000295550 USP17L3A6NCW0 530 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 USP17L4A6NCW7 530 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 HLFQ16534 295 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 TEDDM1Q5T9Z0 273 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 ARHGEF16Q5VV41 709 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 USP17L1Q7RTZ2 530 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 IVNS1ABPQ9Y6Y0 642 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 TAC1P20366 129 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 AOC3Q16853 763 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 SZRD1Q7Z422 152 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 PYROXD1Q8WU10 500 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 EXT2Q93063 718 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 THRAP3Q9Y2W1 955 aaKnown RBP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 THOC5Q13769 683 aaKnown RBP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 DEPDC1Q5TB30 811 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 AP1M1Q9BXS5 423 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 TRIM49BA6NDI0 452 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 PPEF1O14829 653 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 PLA2G4BP0C869 781 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 LRRC8BQ6P9F7 803 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 RAD54LQ92698 747 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 MTBPQ96DY7 904 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 KANSL2Q9H9L4 492 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 GSG1L2A8MUP6 293 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 CDC25AP30304 524 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 ABCD1P33897 745 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 TBCCQ15814 346 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 SPOUT1Q5T280 376 aaKnown RBP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 SH3GL2Q99962 352 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 GYS2P54840 703 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 PTK2Q05397 1052 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 NSMFQ6X4W1 530 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 VIPAS39Q9H9C1 493 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 PABPC4Q13310 644 aaKnown RBP eCLIP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 SUSD4Q5VX71 490 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 BTBD6Q96KE9 485 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 TTC1Q99614 292 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 CCDC90BQ9GZT6 254 aa10.52□□□□□ -0.73
COL6A3-201ENST00000295550 LIMA1Q9UHB6 759 aaKnown RBP10.52□□□□□ -0.73
COL6A3-201ENST00000295550 CFAP73A6NFT4 308 aa10.51□□□□□ -0.73
COL6A3-201ENST00000295550 EMILIN3Q9NT22 766 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms