RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 GPR88Q9GZN0 384 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 PABPC3Q9H361 631 aaKnown RBP29.76■■■□□ 2.35
CBX4-201ENST00000269397 RABGAP1Q9Y3P9 1069 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 GOLGA6L10A0A0M3HER8 536 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 MARCKSL1P49006 195 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 KIAA1755Q5JYT7 1200 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 ZDHHC24Q6UX98 284 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 TBC1D22AQ8WUA7 517 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 ADAM7Q9H2U9 754 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 SEMA4AQ9H3S1 761 aa29.76■■■□□ 2.35
CBX4-201ENST00000269397 NCANO14594 1321 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 FMO5P49326 533 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 BMT2Q1RMZ1 405 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 ARMC9Q7Z3E5 817 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 RDH13Q8NBN7 331 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 ZNF317Q96PQ6 595 aaPredicted RBP29.75■■■□□ 2.35
CBX4-201ENST00000269397 STK33Q9BYT3 514 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 ZMYM2Q9UBW7 1377 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 MSH4O15457 936 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 TRIM37O94972 964 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 IFNAR2P48551 515 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 LACTB2Q53H82 288 aaPredicted RBP29.75■■■□□ 2.35
CBX4-201ENST00000269397 ZFPM1Q8IX07 1006 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 CCDC197Q8NCU1 140 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 KRT35Q92764 455 aa29.75■■■□□ 2.35
CBX4-201ENST00000269397 KIAA0391O15091 583 aaKnown RBP29.74■■■□□ 2.35
CBX4-201ENST00000269397 TNFAIP3P21580 790 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 PSMC2P35998 433 aaKnown RBP29.74■■■□□ 2.35
CBX4-201ENST00000269397 MKRN4PQ13434 485 aaPredicted RBP29.74■■■□□ 2.35
CBX4-201ENST00000269397 LRRC34Q8IZ02 419 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 CRYGNQ8WXF5 182 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 EIF2AK1Q9BQI3 630 aaKnown RBP29.74■■■□□ 2.35
CBX4-201ENST00000269397 CARD9Q9H257 536 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 NFIAQ12857 509 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 RINT1Q6NUQ1 792 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 PRMT1Q99873 361 aaKnown RBP29.74■■■□□ 2.35
CBX4-201ENST00000269397 CCDC113Q9H0I3 377 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 MCM8Q9UJA3 840 aa29.74■■■□□ 2.35
CBX4-201ENST00000269397 GTPBP10A4D1E9 387 aaKnown RBP29.73■■■□□ 2.35
CBX4-201ENST00000269397 CHMP2AO43633 222 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 EEF2P13639 858 aaKnown RBP29.73■■■□□ 2.35
CBX4-201ENST00000269397 FGFR4P22455 802 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 NEDD9Q14511 834 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 CERS5Q8N5B7 392 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 EPS8L3Q8TE67 593 aaKnown RBP29.73■■■□□ 2.35
CBX4-201ENST00000269397 CCT8L1PA6NM43 557 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 UBAP1LF5GYI3 381 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 RGS16O15492 202 aaPredicted RBP29.73■■■□□ 2.35
CBX4-201ENST00000269397 FAM13AO94988 1023 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 MAPK7Q13164 816 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 CCDC38Q502W7 563 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 SLC20A1Q8WUM9 679 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 ATXN2LQ8WWM7 1075 aaKnown RBP29.73■■■□□ 2.35
CBX4-201ENST00000269397 ODF2LQ9ULJ1 636 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 RPTORQ8N122 1335 aa29.73■■■□□ 2.35
CBX4-201ENST00000269397 TULP1O00294 542 aaPredicted RBP29.72■■■□□ 2.35
CBX4-201ENST00000269397 XRCC4Q13426 336 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 PPP1R7Q15435 360 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 HIBCHQ6NVY1 386 aaPredicted RBP29.72■■■□□ 2.35
CBX4-201ENST00000269397 ELAC2Q9BQ52 826 aaKnown RBP29.72■■■□□ 2.35
CBX4-201ENST00000269397 KDM4CQ9H3R0 1056 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 ALG6Q9Y672 507 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 RPL21P46778 160 aaKnown RBP29.72■■■□□ 2.35
CBX4-201ENST00000269397 CACNB3P54284 484 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 LLGL1Q15334 1064 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 TRAPPC3LQ5T215 181 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 SLFN13Q68D06 897 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 TPH2Q8IWU9 490 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 DHX37Q8IY37 1157 aaKnown RBP29.72■■■□□ 2.35
CBX4-201ENST00000269397 SYT11Q9BT88 431 aa29.72■■■□□ 2.35
CBX4-201ENST00000269397 NUDT17P0C025 328 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 VCAM1P19320 739 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 IKQ13123 557 aaPredicted RBP29.71■■■□□ 2.35
CBX4-201ENST00000269397 MSL1Q68DK7 614 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 ZDHHC14Q8IZN3 488 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 INTS2Q9H0H0 1204 aaKnown RBP29.71■■■□□ 2.35
CBX4-201ENST00000269397 GRHL1Q9NZI5 618 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 VAV3Q9UKW4 847 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 NRAPQ86VF7 1730 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 MMP13P45452 471 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 N4BP2L2Q92802 583 aaPredicted RBP29.71■■■□□ 2.35
CBX4-201ENST00000269397 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.71■■■□□ 2.352e-7■■■■■ 196
CBX4-201ENST00000269397 GGT7Q9UJ14 662 aa29.71■■■□□ 2.35
CBX4-201ENST00000269397 FOXN3O00409 490 aaPredicted RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 PPP1R12BO60237 982 aaPredicted RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 VIMP08670 466 aaKnown RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 ZNF746Q6NUN9 644 aaPredicted RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 TTC27Q6P3X3 843 aa29.7■■■□□ 2.35
CBX4-201ENST00000269397 TBC1D31Q96DN5 1066 aa29.7■■■□□ 2.35
CBX4-201ENST00000269397 NAP1L3Q99457 506 aaPredicted RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 INTS9Q9NV88 658 aaKnown RBP29.7■■■□□ 2.35
CBX4-201ENST00000269397 ATP8B3O60423 1300 aa29.7■■■□□ 2.35
CBX4-201ENST00000269397 PPIP5K2O43314 1243 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 NF2P35240 595 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 TCP10Q12799 353 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 FAM133BQ5BKY9 247 aaKnown RBP29.7■■■□□ 2.34
CBX4-201ENST00000269397 WLSQ5T9L3 541 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 CENPTQ96BT3 561 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 GLT8D2Q9H1C3 349 aa29.7■■■□□ 2.34
CBX4-201ENST00000269397 DNAJC18Q9H819 358 aa29.7■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms