RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DCTN4Q9UJW0 460 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 HIBCHQ6NVY1 386 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 FOPNLQ96NB1 174 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ASCC2Q9H1I8 757 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 EIF4E1BA6NMX2 242 aaKnown RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 MOCS2O96007 188 aaPredicted RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 HPCAP84074 193 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 RCSD1Q6JBY9 416 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CENPTQ96BT3 561 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ZBTB40Q9NUA8 1239 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ADCY9O60503 1353 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF197O14709 1029 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 IL10P22301 178 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 HOXA13P31271 388 aaPredicted RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 PALD1Q9ULE6 856 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 DTNAQ9Y4J8 743 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 SEC24BO95487 1268 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ADD1P35611 737 aaKnown RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CYGBQ8WWM9 190 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 FAM161BQ96MY7 647 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ZFYVE9O95405 1425 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 SRGAP2O75044 1071 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 MMEP08473 750 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ALFQ53S48 1182 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 IYDQ6PHW0 289 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 FLAD1Q8NFF5 587 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 P2RX5Q93086 422 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 HES6Q96HZ4 224 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 GTF2A1LQ9UNN4 478 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 RAD17O75943 681 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CHRNA3P32297 505 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CCDC15Q0P6D6 951 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 PHKG1Q16816 387 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 COBLL1Q53SF7 1204 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 DBNDD1Q9H9R9 158 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 BTBD18B2RXH4 712 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 TBC1D4O60343 1298 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 PSMA3P25788 255 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 PWP1Q13610 501 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 COG1Q8WTW3 980 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ARL8AQ96BM9 186 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 DEPDC7Q96QD5 511 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 MKL2Q9ULH7 1088 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 TTC7AQ9ULT0 858 aaPredicted RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 KRT38O76015 456 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 TOMM70O94826 608 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CSE1LP55060 971 aaKnown RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF667Q5HYK9 610 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF274Q96GC6 653 aaPredicted RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 DHTKD1Q96HY7 919 aaPredicted RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ANAPC7Q9UJX3 599 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 AKT1P31749 480 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 MAN2A1Q16706 1144 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 GPATCH4Q5T3I0 446 aaKnown RBP12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ARHGAP17Q68EM7 881 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 ASNSD1Q9NWL6 643 aa12.09□□□□□ -0.47
PTPN4-201ENST00000263708 CUEDC2Q9H467 287 aa12.08□□□□□ -0.47
PTPN4-201ENST00000263708 CYP26B1Q9NR63 512 aa12.08□□□□□ -0.47
PTPN4-201ENST00000263708 HMOX2P30519 316 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 INPP5DQ92835 1189 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 TLR2O60603 784 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 CENPPQ6IPU0 288 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 ARMC6Q6NXE6 501 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 DNAJC10Q8IXB1 793 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 EDC3Q96F86 508 aaKnown RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SIK2Q9H0K1 926 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 UNC45AQ9H3U1 944 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RAD51Q06609 339 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF235Q14590 738 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 TBCKQ8TEA7 893 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 DIS3LQ8TF46 1054 aaKnown RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF804BA4D1E1 1349 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 PYGMP11217 842 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 CPB1P15086 417 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SOAT1P35610 550 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RBM6P78332 1123 aaKnown RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RARS2Q5T160 578 aaKnown RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 FAM47EQ6ZV65 393 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 HEMGNQ9BXL5 484 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 TJP2Q9UDY2 1190 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 BEND6Q5SZJ8 279 aaPredicted RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 GCOM2Q9BZD3 368 aaPredicted RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SPTLC3Q9NUV7 552 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RABGGTAQ92696 567 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 MRPS26Q9BYN8 205 aaKnown RBP12.08□□□□□ -0.48
PTPN4-201ENST00000263708 MLXIPLQ9NP71 852 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SOWAHDA6NJG2 315 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 EPB42P16452 691 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RWDD2BP57060 319 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 CHRNDQ07001 517 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SLFN12LQ6IEE8 588 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 SNX31Q8N9S9 440 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 EXOC4Q96A65 974 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 PLAAQ9Y263 795 aa12.08□□□□□ -0.48
PTPN4-201ENST00000263708 RSPH10B2B2RC85 870 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 RSPH10BP0C881 870 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 SSTR3P32745 418 aaPredicted RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 PEX3P56589 373 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms