RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RAPGEF5Q92565 580 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 CCDC127Q96BQ5 260 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 RAB17Q9H0T7 212 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 PI4KBQ9UBF8 816 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 GGT7Q9UJ14 662 aa13.69□□□□□ -0.22
LIG1-201ENST00000263274 AP3B2Q13367 1082 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 PPP2R5AQ15172 486 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 E2F5Q15329 346 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 HYIQ5T013 277 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 RBM26Q5T8P6 1007 aaKnown RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 PPM1KQ8N3J5 372 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 INTS2Q9H0H0 1204 aaKnown RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 MLXIPLQ9NP71 852 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 FAM114A2Q9NRY5 505 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 TCEAL9Q9UHQ7 104 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 MYH1P12882 1939 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 IGKV6D-41A0A0C4DH26 115 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 K7ENM7 598 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 RGS16O15492 202 aaPredicted RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 TGFB1I1O43294 461 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 EYA4O95677 639 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 FTLP02792 175 aaPredicted RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 MARSP56192 900 aaKnown RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 EN1Q05925 392 aaPredicted RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 SNX1Q13596 522 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 NBPF9Q3BBW0 867 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 GKAP1Q5VSY0 366 aaPredicted RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 OTUD6AQ7L8S5 288 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 MREGQ8N565 214 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 RFFLQ8WZ73 363 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 BTBD6Q96KE9 485 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 PSMD1Q99460 953 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 DNAJC18Q9H819 358 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 DONSONQ9NYP3 566 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 SHBGP04278 402 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 FGFR4P22455 802 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 SSR1P43307 286 aaKnown RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 C18orf8Q96DM3 657 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 FAM20AQ96MK3 541 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 ERVK-5Q9HDB9 667 aa13.68□□□□□ -0.22
LIG1-201ENST00000263274 SUCLA2Q9P2R7 463 aaPredicted RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 DDX20Q9UHI6 824 aaKnown RBP13.68□□□□□ -0.22
LIG1-201ENST00000263274 TCP10L2B9ZVM9 353 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 F8VZ95 297 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 GJC1P36383 396 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 DDR1Q08345 913 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CETN1Q12798 172 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 ARHGAP27Q6ZUM4 889 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 TMC3Q7Z5M5 1100 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CCDC13Q8IYE1 715 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 FBXO25Q8TCJ0 367 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 AZI2Q9H6S1 392 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 SIX2Q9NPC8 291 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CD2APQ9Y5K6 639 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 DLEC1Q9Y238 1755 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CLRN2A0PK11 232 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 FOSP01100 380 aaPredicted RBP13.67□□□□□ -0.22
LIG1-201ENST00000263274 ECE1P42892 770 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 MARCKSL1P49006 195 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 PPP1R7Q15435 360 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 TRIP13Q15645 432 aaPredicted RBP13.67□□□□□ -0.22
LIG1-201ENST00000263274 KCNV1Q6PIU1 500 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 STXBP4Q6ZWJ1 553 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 EGFL6Q8IUX8 553 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 SUGP1Q8IWZ8 645 aaKnown RBP13.67□□□□□ -0.22
LIG1-201ENST00000263274 SEC16BQ96JE7 1060 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CALR3Q96L12 384 aaKnown RBP13.67□□□□□ -0.22
LIG1-201ENST00000263274 RASAL2Q9UJF2 1139 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 ALG6Q9Y672 507 aa13.67□□□□□ -0.22
LIG1-201ENST00000263274 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 DCAF4Q8WV16 495 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 ZNF577Q9BSK1 485 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 SLITRK6Q9H5Y7 841 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 KCNK9Q9NPC2 374 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 HOMER2Q9NSB8 354 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 HAUS2Q9NVX0 235 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 LAMB1P07942 1786 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 EMSYQ7Z589 1322 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 ECM2O94769 699 aaPredicted RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 ECHS1P30084 290 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 SPIRE1Q08AE8 756 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 BIRC3Q13489 604 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 SLC29A2Q14542 456 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 LRRC14Q15048 493 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 SEL1L2Q5TEA6 688 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 C15orf52Q6ZUT6 534 aaKnown RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 RPAINQ86UA6 219 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 PNMA8AQ86V59 439 aaPredicted RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 CD302Q8IX05 232 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 CPXCR1Q8N123 301 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 KRT35Q92764 455 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 CSRNP1Q96S65 589 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 STK33Q9BYT3 514 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 TMEM59LQ9UK28 342 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 DBR1Q9UK59 544 aaKnown RBP13.66□□□□□ -0.22
LIG1-201ENST00000263274 PMS2P54278 862 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 LRIG3Q6UXM1 1119 aa13.66□□□□□ -0.22
LIG1-201ENST00000263274 SPATS2Q86XZ4 545 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms