RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 FOXO4P98177 505 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 ALCAMQ13740 583 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 KNOP1Q1ED39 458 aaKnown RBP19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 HAUS8Q9BT25 410 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 ADAM33Q9BZ11 813 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 VPS11Q9H270 941 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 KLHL11Q9NVR0 708 aa19.98■□□□□ 0.79
SMARCC1-201ENST00000254480 HSPA4LO95757 839 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 EEF1B2P24534 225 aaKnown RBP19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 PSPC1Q8WXF1 523 aaKnown RBP19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 EIF2AK1Q9BQI3 630 aaKnown RBP19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 PODNQ7Z5L7 613 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 WHAMMQ8TF30 809 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 PTCH1Q13635 1447 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 FAM205CA6NFA0 338 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 USP27XA6NNY8 438 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 QARSP47897 775 aaKnown RBP19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 INPP1P49441 399 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 TMPRSS15P98073 1019 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 C1orf228Q6PIY5 440 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 RHOT2Q8IXI1 618 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 BARHL2Q9NY43 387 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 GNA15P30679 374 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 PDCLQ13371 301 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 TRIM42Q8IWZ5 723 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 TMEM35BQ8NCS4 154 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 MCPH1Q8NEM0 835 aa19.97■□□□□ 0.79
SMARCC1-201ENST00000254480 GPC5P78333 572 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 AP1B1Q10567 949 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 SPATS2Q86XZ4 545 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 INTS2Q9H0H0 1204 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 ZNF564Q8TBZ8 553 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 EDEM3Q9BZQ6 932 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 PRDM15P57071 1507 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 FTLP02792 175 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 ESRRAP11474 423 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 MTMR2Q13614 643 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 ATXN7L3BQ96GX2 97 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 KLC2Q9H0B6 622 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 ELP3Q9H9T3 547 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 IQANK1A0A1B0GTG1 560 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 NBPF26B4DH59 902 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 PSMC1P62191 440 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 MKRN4PQ13434 485 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 CCDC144BQ3MJ40 725 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 NBPF10Q6P3W6 841 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 NBPF15Q8N660 670 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 SLC8A2Q9UPR5 921 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 NMT1P30419 496 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 SLC8A1P32418 973 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 POU5F1BQ06416 359 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 DCAF4L1Q3SXM0 396 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 RNF219Q5W0B1 726 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 RNF135Q8IUD6 432 aa19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 FMR1NBQ8N0W7 255 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 DDX47Q9H0S4 455 aaKnown RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 TOPORSQ9NS56 1045 aaPredicted RBP19.96■□□□□ 0.79
SMARCC1-201ENST00000254480 APOEP02649 317 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 ABCD1P33897 745 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 ACCSLQ4AC99 568 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 ZBTB12Q9Y330 459 aaPredicted RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 LCP1P13796 627 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 FRA10AC1Q70Z53 315 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 CCHCR1Q8TD31 782 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 IFT43Q96FT9 208 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 TBC1D22BQ9NU19 505 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 HSPA6P17066 643 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 TBC1D1Q86TI0 1168 aaPredicted RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 SRRM1Q8IYB3 904 aaKnown RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 FAF1Q9UNN5 650 aaPredicted RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 CDC42BPGQ6DT37 1551 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 NAA30Q147X3 362 aaPredicted RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 SRBD1Q8N5C6 995 aaKnown RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 GTSE1Q9NYZ3 720 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 AFF4Q9UHB7 1163 aaKnown RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 MAP3K4Q9Y6R4 1608 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 NEMP1O14524 444 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 HADHAP40939 763 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 TTLL4Q14679 1199 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 HIBCHQ6NVY1 386 aaPredicted RBP19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 KLC3Q6P597 504 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 SMYD3Q9H7B4 428 aa19.95■□□□□ 0.78
SMARCC1-201ENST00000254480 RASA4BC9J798 803 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 RASA4O43374 803 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 P4HBP07237 508 aaKnown RBP19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 SUCLA2Q9P2R7 463 aaPredicted RBP19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 COPEO14579 308 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 AGR3Q8TD06 166 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 CCDC138Q96M89 665 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 SHC4Q6S5L8 630 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 GLYCTKQ8IVS8 523 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 BEST2Q8NFU1 509 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 CIITAP33076 1130 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 STOX1Q6ZVD7 989 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 C1orf54Q8WWF1 131 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 SPON2Q9BUD6 331 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 PPARGC1AQ9UBK2 798 aaKnown RBP19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 RNF14Q9UBS8 474 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 EMSYQ7Z589 1322 aa19.94■□□□□ 0.78
SMARCC1-201ENST00000254480 CCDC151A5D8V7 595 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms