RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 NDUFV1P49821 464 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 SPIRE1Q08AE8 756 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 CTTNQ14247 550 aaKnown RBP24.82■■□□□ 1.56
VTI1B-201ENST00000216456 ANKRD1Q15327 319 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 PUS10Q3MIT2 529 aaKnown RBP24.82■■□□□ 1.56
VTI1B-201ENST00000216456 DYDC2Q96IM9 177 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 MSLNLQ96KJ4 702 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 FAM20AQ96MK3 541 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 GCOM2Q9BZD3 368 aaPredicted RBP24.82■■□□□ 1.56
VTI1B-201ENST00000216456 CYP26B1Q9NR63 512 aa24.82■■□□□ 1.56
VTI1B-201ENST00000216456 BTBD18B2RXH4 712 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 PI4K2BG5E9Z4 385 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 NCK2O43639 380 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 KRT2P35908 639 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 CYP4A11Q02928 519 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 PLPP4Q5VZY2 271 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 EFHBQ8N7U6 833 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 TMEM143Q96AN5 459 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 LXNQ9BS40 222 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 TLR9Q9NR96 1032 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 AAASQ9NRG9 546 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 CD207Q9UJ71 328 aa24.81■■□□□ 1.56
VTI1B-201ENST00000216456 A0A0U1RQF3 1178 aa24.8■■□□□ 1.56
VTI1B-201ENST00000216456 GCFC2P16383 781 aaKnown RBP24.8■■□□□ 1.56
VTI1B-201ENST00000216456 KCNT2Q6UVM3 1135 aa24.8■■□□□ 1.56
VTI1B-201ENST00000216456 CEP170P1Q96L14 293 aa24.8■■□□□ 1.56
VTI1B-201ENST00000216456 TLE6Q9H808 572 aa24.8■■□□□ 1.56
VTI1B-201ENST00000216456 A0A087WWV3 80 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 NT5C1B-RDH14C9J2C7 533 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 FSCN2O14926 492 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 MARCH6O60337 910 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 P4HBP07237 508 aaKnown RBP24.79■■□□□ 1.56
VTI1B-201ENST00000216456 LAG3P18627 525 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 DNM2P50570 870 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 EPHA7Q15375 998 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 SMAD2Q15796 467 aaKnown RBP24.79■■□□□ 1.56
VTI1B-201ENST00000216456 TMEM31Q5JXX7 168 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 ABI1Q8IZP0 508 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 MINDY3Q9H8M7 445 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 IFT122Q9HBG6 1241 aa24.79■■□□□ 1.56
VTI1B-201ENST00000216456 PIN4Q9Y237 131 aaKnown RBP24.79■■□□□ 1.56
VTI1B-201ENST00000216456 C19orf67A6NJJ6 358 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 HIDE1A8MVS5 230 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 GUCY1B3Q02153 619 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 SMAD4Q13485 552 aaKnown RBP24.78■■□□□ 1.56
VTI1B-201ENST00000216456 ADHFE1Q8IWW8 467 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 LRRC43Q8N309 656 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 WASF1Q92558 559 aa24.78■■□□□ 1.56
VTI1B-201ENST00000216456 TBX3O15119 743 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 SRGAP2CP0DJJ0 459 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 YWHABP31946 246 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 PHKA2P46019 1235 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 UBE3AQ05086 875 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 ERICH6BQ5W0A0 696 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 TWF2Q6IBS0 349 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 CATSPER4Q7RTX7 472 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 TMEM173Q86WV6 379 aaPredicted RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 DIS3L2Q8IYB7 885 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 PRPF31Q8WWY3 499 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 MRPS27Q92552 414 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 ZNF558Q96NG5 402 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 DHX33Q9H6R0 707 aaKnown RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 RNF216Q9NWF9 866 aaPredicted RBP24.77■■□□□ 1.56
VTI1B-201ENST00000216456 COL4A3BPQ9Y5P4 624 aa24.77■■□□□ 1.56
VTI1B-201ENST00000216456 HOXA2O43364 376 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 POLGP54098 1239 aaPredicted RBP24.76■■□□□ 1.55
VTI1B-201ENST00000216456 DUSP6Q16828 381 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 FAM43BQ6ZT52 329 aaPredicted RBP24.76■■□□□ 1.55
VTI1B-201ENST00000216456 ZNF410Q86VK4 478 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 TPH2Q8IWU9 490 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 ZNF710Q8N1W2 664 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 PPP2R3CQ969Q6 453 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 TCF25Q9BQ70 676 aa24.76■■□□□ 1.55
VTI1B-201ENST00000216456 B4GALT3O60512 393 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 SLITRK3O94933 977 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 ATP2B1P20020 1258 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 SFPQP23246 707 aaKnown RBP eCLIP24.75■■□□□ 1.55
VTI1B-201ENST00000216456 PLCB3Q01970 1234 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 XKR9Q5GH70 373 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 LLGL2Q6P1M3 1020 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 C4orf19Q8IY42 314 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 SMRP1Q8NCR6 262 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 SLC7A3Q8WY07 619 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 EIF2AK1Q9BQI3 630 aaKnown RBP24.75■■□□□ 1.55
VTI1B-201ENST00000216456 APOL5Q9BWW9 433 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 XPNPEP1Q9NQW7 623 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 ENTPD7Q9NQZ7 604 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 DACT1Q9NYF0 836 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 PRKAG3Q9UGI9 489 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 FAM50BQ9Y247 325 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 INPP5FQ9Y2H2 1132 aa24.75■■□□□ 1.55
VTI1B-201ENST00000216456 GPR37L1O60883 481 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 EYA4O95677 639 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 EOMESO95936 686 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 AFF1P51825 1210 aaKnown RBP24.74■■□□□ 1.55
VTI1B-201ENST00000216456 BCAR1P56945 870 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 LAMTOR4Q0VGL1 99 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 EMC2Q15006 297 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 CALCRLQ16602 461 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 SLC39A11Q8N1S5 342 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms