RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PPATQ06203 517 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 PDE4CQ08493 712 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 MAPK7Q13164 816 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 GPATCH4Q5T3I0 446 aaKnown RBP11.61□□□□□ -0.55
USP28-201ENST00000003302 FAM186BQ8IYM0 893 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 MREGQ8N565 214 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 EPS8L3Q8TE67 593 aaKnown RBP11.61□□□□□ -0.55
USP28-201ENST00000003302 MEFVO15553 781 aaPredicted RBP11.61□□□□□ -0.55
USP28-201ENST00000003302 CCDC13Q8IYE1 715 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 ZDHHC18Q9NUE0 388 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 PIAS1O75925 651 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 H2AFZP0C0S5 128 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 HOXA10P31260 410 aaPredicted RBP11.61□□□□□ -0.55
USP28-201ENST00000003302 TNIP1Q15025 636 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 GRIPAP1Q4V328 841 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 C6orf89Q6UWU4 347 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 H2AFVQ71UI9 128 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 OTUD6AQ7L8S5 288 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 ACTRT1Q8TDG2 376 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 TEKT1Q969V4 418 aa11.61□□□□□ -0.55
USP28-201ENST00000003302 CPP00450 1065 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SREBF1P36956 1147 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PPP1R2P41236 205 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 LRRC14Q15048 493 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 FRMD5Q7Z6J6 570 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PDGFDQ9GZP0 370 aaPredicted RBP11.6□□□□□ -0.55
USP28-201ENST00000003302 AGPAT3Q9NRZ7 376 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 ZNF831Q5JPB2 1677 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 RPTORQ8N122 1335 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PRKCIP41743 596 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 IFNAR2P48551 515 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 KRT71Q3SY84 523 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 FBXO11Q86XK2 927 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 DDX23Q9BUQ8 820 aaKnown RBP11.6□□□□□ -0.55
USP28-201ENST00000003302 EDEM3Q9BZQ6 932 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 UNC45AQ9H3U1 944 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 TYW1Q9NV66 732 aaKnown RBP11.6□□□□□ -0.55
USP28-201ENST00000003302 DBR1Q9UK59 544 aaKnown RBP11.6□□□□□ -0.55
USP28-201ENST00000003302 SHTN1A0MZ66 631 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 TCP10L2B9ZVM9 353 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 BBOX1O75936 387 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 USP8P40818 1118 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 GBP6Q6ZN66 633 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 ANKS1BQ7Z6G8 1248 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SLC47A2Q86VL8 602 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 ATG4AQ8WYN0 398 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SEMA4DQ92854 862 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 MKL1Q969V6 931 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 GOPCQ9HD26 462 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 ZBTB12Q9Y330 459 aaPredicted RBP11.6□□□□□ -0.55
USP28-201ENST00000003302 KDM3AQ9Y4C1 1321 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SGPL1O95470 568 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 CFHP08603 1231 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PYGMP11217 842 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 ITGB5P18084 799 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SLC29A2Q14542 456 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 AOC3Q16853 763 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 SEPT12Q8IYM1 358 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PRELID2Q8N945 189 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 TAF4BQ92750 862 aa11.6□□□□□ -0.55
USP28-201ENST00000003302 PDXKO00764 312 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 PSMC4P43686 418 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 RPL21P46778 160 aaKnown RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 WNT7BP56706 349 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GLE1Q53GS7 698 aaKnown RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 ZNF720Q7Z2F6 126 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 TMEM130Q8N3G9 435 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 AMNQ9BXJ7 453 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 WDR11Q9BZH6 1224 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 HAUS2Q9NVX0 235 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GRHL1Q9NZI5 618 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 ALG6Q9Y672 507 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 PSMD10O75832 226 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GTF2A1P52655 376 aaPredicted RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 SEMA3FQ13275 785 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 TRIP13Q15645 432 aaPredicted RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 UGCGQ16739 394 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 ODR4Q5SWX8 454 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 RASGEF1CQ8N431 466 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 TBC1D22AQ8WUA7 517 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 FZD1Q9UP38 647 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 PITPNM2Q9BZ72 1349 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 COL11A2P13942 1736 aaPredicted RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 TRAPPC3O43617 180 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GJB6O95452 261 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GH1P01241 217 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 CHRNB2P17787 502 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 SOX5P35711 763 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 AGBL1Q96MI9 1066 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 PI4K2AQ9BTU6 479 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 TXLNGYQ9BZA5 131 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 HTTP42858 3142 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 GCFC2P16383 781 aaKnown RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 VCAM1P19320 739 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 ZNF76P36508 570 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 ODF2Q5BJF6 829 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 LRCH2Q5VUJ6 765 aa11.59□□□□□ -0.55
USP28-201ENST00000003302 LMBRD2Q68DH5 695 aaPredicted RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 COL23A1Q86Y22 540 aaPredicted RBP11.59□□□□□ -0.55
USP28-201ENST00000003302 PRPF38AQ8NAV1 312 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms