RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-231ENST00000641939 RNF17Q9BXT8 1623 aaKnown RBP23.23■■□□□ 1.31
PHGDH-231ENST00000641939 NPATQ14207 1427 aa23.23■■□□□ 1.31
PHGDH-231ENST00000641939 FAM50AQ14320 339 aaKnown RBP23.22■■□□□ 1.31
PHGDH-231ENST00000641939 KIF15Q9NS87 1388 aa23.21■■□□□ 1.31
PHGDH-231ENST00000641939 KDM5DQ9BY66 1539 aa23.21■■□□□ 1.31
PHGDH-231ENST00000641939 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
PHGDH-231ENST00000641939 RRP7BPQ9NSQ0 103 aa23.18■■□□□ 1.3
PHGDH-231ENST00000641939 WASHC2CQ9Y4E1 1318 aa23.17■■□□□ 1.3
PHGDH-231ENST00000641939 CHIC2Q9UKJ5 165 aa23.17■■□□□ 1.3
PHGDH-231ENST00000641939 PTPRKQ15262 1439 aa23.16■■□□□ 1.3
PHGDH-231ENST00000641939 ANKRD30AQ9BXX3 1397 aa23.16■■□□□ 1.3
PHGDH-231ENST00000641939 ERBINQ96RT1 1412 aa23.16■■□□□ 1.3
PHGDH-231ENST00000641939 ZC3H13Q5T200 1668 aaKnown RBP23.15■■□□□ 1.3
PHGDH-231ENST00000641939 MROH1Q8NDA8 1641 aa23.15■■□□□ 1.3
PHGDH-231ENST00000641939 NCOA1Q15788 1441 aa23.14■■□□□ 1.29
PHGDH-231ENST00000641939 ADGRL2O95490 1459 aa23.13■■□□□ 1.29
PHGDH-231ENST00000641939 MYO3AQ8NEV4 1616 aa23.12■■□□□ 1.29
PHGDH-231ENST00000641939 ABCC3O15438 1527 aa23.12■■□□□ 1.29
PHGDH-231ENST00000641939 PZPP20742 1482 aa23.11■■□□□ 1.29
PHGDH-231ENST00000641939 ZNF142P52746 1687 aaPredicted RBP23.1■■□□□ 1.29
PHGDH-231ENST00000641939 STRCQ7RTU9 1775 aa23.1■■□□□ 1.29
PHGDH-231ENST00000641939 CEP152O94986 1710 aa23.1■■□□□ 1.29
PHGDH-231ENST00000641939 PRDM15P57071 1507 aaPredicted RBP23.08■■□□□ 1.29
PHGDH-231ENST00000641939 DEPDC5O75140 1603 aa23.08■■□□□ 1.29
PHGDH-231ENST00000641939 ILDR1Q86SU0 546 aaPredicted RBP23.08■■□□□ 1.29
PHGDH-231ENST00000641939 CEP170BQ9Y4F5 1589 aaPredicted RBP23.06■■□□□ 1.28
PHGDH-231ENST00000641939 FBXO31Q5XUX0 539 aaPredicted RBP23.06■■□□□ 1.28
PHGDH-231ENST00000641939 CAMSAP1Q5T5Y3 1602 aa23.05■■□□□ 1.28
PHGDH-231ENST00000641939 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.05■■□□□ 1.28
PHGDH-231ENST00000641939 CFAP65Q6ZU64 1925 aaKnown RBP23.05■■□□□ 1.28
PHGDH-231ENST00000641939 TNRQ92752 1358 aa23.03■■□□□ 1.28
PHGDH-231ENST00000641939 A2ML1A8K2U0 1454 aa23.01■■□□□ 1.27
PHGDH-231ENST00000641939 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.01■■□□□ 1.27
PHGDH-231ENST00000641939 KANK1Q14678 1352 aa23.01■■□□□ 1.27
PHGDH-231ENST00000641939 DMRT2Q9Y5R5 561 aa23■■□□□ 1.27
PHGDH-231ENST00000641939 ROCK1Q13464 1354 aa23■■□□□ 1.27
PHGDH-231ENST00000641939 ANKRD50Q9ULJ7 1429 aa22.99■■□□□ 1.27
PHGDH-231ENST00000641939 SPATA31D1Q6ZQQ2 1576 aa22.99■■□□□ 1.27
PHGDH-231ENST00000641939 RRBP1Q9P2E9 1410 aaKnown RBP22.98■■□□□ 1.27
PHGDH-231ENST00000641939 VWDEQ8N2E2 1590 aa22.97■■□□□ 1.27
PHGDH-231ENST00000641939 ITGAEP38570 1179 aa22.97■■□□□ 1.27
PHGDH-231ENST00000641939 ERVK-7P63135 1459 aa22.97■■□□□ 1.27
PHGDH-231ENST00000641939 ARHGAP31Q2M1Z3 1444 aa22.96■■□□□ 1.27
PHGDH-231ENST00000641939 NLRP1Q9C000 1473 aa22.96■■□□□ 1.27
PHGDH-231ENST00000641939 PLA2R1Q13018 1463 aa22.95■■□□□ 1.26
PHGDH-231ENST00000641939 LMTK2Q8IWU2 1503 aa22.94■■□□□ 1.26
PHGDH-231ENST00000641939 PTPRTO14522 1441 aa22.94■■□□□ 1.26
PHGDH-231ENST00000641939 PKD2Q13563 968 aa22.9■■□□□ 1.26
PHGDH-231ENST00000641939 UNC13BO14795 1591 aa22.89■■□□□ 1.26
PHGDH-231ENST00000641939 UGGT1Q9NYU2 1555 aa22.89■■□□□ 1.26
PHGDH-231ENST00000641939 NCKAP5LQ9HCH0 1330 aa22.89■■□□□ 1.26
PHGDH-231ENST00000641939 EFCAB6Q5THR3 1501 aa22.88■■□□□ 1.25
PHGDH-231ENST00000641939 POLR1AO95602 1720 aaPredicted RBP22.88■■□□□ 1.25
PHGDH-231ENST00000641939 THEMISQ8N1K5 641 aaPredicted RBP22.86■■□□□ 1.25
PHGDH-231ENST00000641939 TET3O43151 1660 aa22.85■■□□□ 1.25
PHGDH-231ENST00000641939 UBR1Q8IWV7 1749 aa22.84■■□□□ 1.25
PHGDH-231ENST00000641939 GCC2Q8IWJ2 1684 aa22.84■■□□□ 1.25
PHGDH-231ENST00000641939 IQGAP3Q86VI3 1631 aa22.81■■□□□ 1.24
PHGDH-231ENST00000641939 RPRD2Q5VT52 1461 aaKnown RBP22.8■■□□□ 1.24
PHGDH-231ENST00000641939 NEURL4Q96JN8 1562 aa22.8■■□□□ 1.24
PHGDH-231ENST00000641939 ANKLE2Q86XL3 938 aa22.79■■□□□ 1.24
PHGDH-231ENST00000641939 SYNMO15061 1565 aa22.79■■□□□ 1.24
PHGDH-231ENST00000641939 PIK3C2BO00750 1634 aa22.79■■□□□ 1.24
PHGDH-231ENST00000641939 NOS1P29475 1434 aa22.78■■□□□ 1.24
PHGDH-231ENST00000641939 CERKQ8TCT0 537 aa22.78■■□□□ 1.24
PHGDH-231ENST00000641939 NUP155O75694 1391 aa22.76■■□□□ 1.23
PHGDH-231ENST00000641939 E9PCH4 1651 aa22.75■■□□□ 1.23
PHGDH-231ENST00000641939 KDM5AP29375 1690 aaKnown RBP22.75■■□□□ 1.23
PHGDH-231ENST00000641939 FBXO41Q8TF61 875 aa22.75■■□□□ 1.23
PHGDH-231ENST00000641939 LTBP4Q8N2S1 1624 aa22.75■■□□□ 1.23
PHGDH-231ENST00000641939 NAIPQ13075 1403 aa22.74■■□□□ 1.23
PHGDH-231ENST00000641939 IDI1Q13907 227 aa22.73■■□□□ 1.23
PHGDH-231ENST00000641939 MED14O60244 1454 aa22.73■■□□□ 1.23
PHGDH-231ENST00000641939 SLC52A1Q9NWF4 448 aa22.71■■□□□ 1.23
PHGDH-231ENST00000641939 STAG3Q9UJ98 1225 aa22.71■■□□□ 1.23
PHGDH-231ENST00000641939 HFM1A2PYH4 1435 aa22.71■■□□□ 1.23
PHGDH-231ENST00000641939 SLIT1O75093 1534 aa22.71■■□□□ 1.23
PHGDH-231ENST00000641939 IQGAP1P46940 1657 aa22.71■■□□□ 1.23
PHGDH-231ENST00000641939 NPHP4O75161 1426 aaPredicted RBP22.7■■□□□ 1.22
PHGDH-231ENST00000641939 ARHGAP23Q9P227 1491 aa22.7■■□□□ 1.22
PHGDH-231ENST00000641939 ZNF335Q9H4Z2 1342 aaPredicted RBP22.69■■□□□ 1.22
PHGDH-231ENST00000641939 ADGRB3O60242 1522 aa22.68■■□□□ 1.22
PHGDH-231ENST00000641939 SCAF11Q99590 1463 aaKnown RBP22.67■■□□□ 1.22
PHGDH-231ENST00000641939 MYO5BQ9ULV0 1848 aa22.66■■□□□ 1.22
PHGDH-231ENST00000641939 TMEM2Q9UHN6 1383 aa22.65■■□□□ 1.22
PHGDH-231ENST00000641939 LTKP29376 864 aa22.64■■□□□ 1.21
PHGDH-231ENST00000641939 TXNDC2Q86VQ3 553 aa22.64■■□□□ 1.21
PHGDH-231ENST00000641939 EID1Q9Y6B2 187 aa22.64■■□□□ 1.21
PHGDH-231ENST00000641939 IQSEC2Q5JU85 1478 aa22.62■■□□□ 1.21
PHGDH-231ENST00000641939 SPHKAPQ2M3C7 1700 aa22.62■■□□□ 1.21
PHGDH-231ENST00000641939 TMEM131LA2VDJ0 1609 aa22.6■■□□□ 1.21
PHGDH-231ENST00000641939 TRIM52Q96A61 297 aa22.58■■□□□ 1.21
PHGDH-231ENST00000641939 CPS1P31327 1500 aa22.57■■□□□ 1.2
PHGDH-231ENST00000641939 STRCP1A6NGW2 1772 aa22.54■■□□□ 1.2
PHGDH-231ENST00000641939 CHGAP10645 457 aaKnown RBP22.54■■□□□ 1.2
PHGDH-231ENST00000641939 ZFYVE9O95405 1425 aa22.53■■□□□ 1.2
PHGDH-231ENST00000641939 RIMS2Q9UQ26 1411 aa22.51■■□□□ 1.19
PHGDH-231ENST00000641939 HDGFP51858 240 aaKnown RBP22.5■■□□□ 1.19
PHGDH-231ENST00000641939 SLC4A1APQ9BWU0 796 aaKnown RBP22.5■■□□□ 1.19
PHGDH-231ENST00000641939 TRPM2O94759 1503 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms