RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 MED1Q15648 1581 aaPredicted RBP11.9□□□□□ -0.5
CIITA-214ENST00000636238 CLTCQ00610 1675 aaKnown RBP11.9□□□□□ -0.5
CIITA-214ENST00000636238 DNMT1P26358 1616 aaKnown RBP11.89□□□□□ -0.51
CIITA-214ENST00000636238 ADGBQ8N7X0 1667 aa11.89□□□□□ -0.51
CIITA-214ENST00000636238 MTUS2Q5JR59 1369 aa11.89□□□□□ -0.51
CIITA-214ENST00000636238 MBD5Q9P267 1494 aa11.89□□□□□ -0.51
CIITA-214ENST00000636238 KDM5DQ9BY66 1539 aa11.87□□□□□ -0.51
CIITA-214ENST00000636238 SUPT6HQ7KZ85 1726 aaKnown RBP11.87□□□□□ -0.51
CIITA-214ENST00000636238 MIA2Q96PC5 1412 aa11.86□□□□□ -0.51
CIITA-214ENST00000636238 PHF23Q9BUL5 403 aaPredicted RBP11.86□□□□□ -0.51
CIITA-214ENST00000636238 NEURL4Q96JN8 1562 aa11.86□□□□□ -0.51
CIITA-214ENST00000636238 NPHP4O75161 1426 aaPredicted RBP11.86□□□□□ -0.51
CIITA-214ENST00000636238 CEP162Q5TB80 1403 aa11.86□□□□□ -0.51
CIITA-214ENST00000636238 SCAF1Q9H7N4 1312 aaKnown RBP11.86□□□□□ -0.51
CIITA-214ENST00000636238 PIP4K2BP78356 416 aa11.85□□□□□ -0.51
CIITA-214ENST00000636238 DEPDC5O75140 1603 aa11.85□□□□□ -0.51
CIITA-214ENST00000636238 WASHC2CQ9Y4E1 1318 aa11.85□□□□□ -0.51
CIITA-214ENST00000636238 VWDEQ8N2E2 1590 aa11.84□□□□□ -0.51
CIITA-214ENST00000636238 EHMT2Q96KQ7 1210 aa11.84□□□□□ -0.51
CIITA-214ENST00000636238 CCDC141Q6ZP82 1450 aa11.83□□□□□ -0.52
CIITA-214ENST00000636238 EHBP1L1Q8N3D4 1523 aa11.83□□□□□ -0.52
CIITA-214ENST00000636238 KIF3BO15066 747 aa11.83□□□□□ -0.52
CIITA-214ENST00000636238 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.82□□□□□ -0.52
CIITA-214ENST00000636238 UGGT1Q9NYU2 1555 aa11.82□□□□□ -0.52
CIITA-214ENST00000636238 FBXO31Q5XUX0 539 aaPredicted RBP11.81□□□□□ -0.52
CIITA-214ENST00000636238 POLR1AO95602 1720 aaPredicted RBP11.8□□□□□ -0.52
CIITA-214ENST00000636238 TIAM1Q13009 1591 aa11.8□□□□□ -0.52
CIITA-214ENST00000636238 LOC105371045A0A1W2PR82 267 aa11.8□□□□□ -0.52
CIITA-214ENST00000636238 ZNF644Q9H582 1327 aaPredicted RBP11.8□□□□□ -0.52
CIITA-214ENST00000636238 SYNMO15061 1565 aa11.79□□□□□ -0.52
CIITA-214ENST00000636238 LRRC7Q96NW7 1537 aa11.78□□□□□ -0.52
CIITA-214ENST00000636238 TSPY4P0CV99 314 aa11.78□□□□□ -0.52
CIITA-214ENST00000636238 TSPY10P0CW01 314 aa11.78□□□□□ -0.52
CIITA-214ENST00000636238 ALKQ9UM73 1620 aa11.78□□□□□ -0.52
CIITA-214ENST00000636238 RNF17Q9BXT8 1623 aaKnown RBP11.77□□□□□ -0.53
CIITA-214ENST00000636238 ARHGEF5Q12774 1597 aa11.76□□□□□ -0.53
CIITA-214ENST00000636238 CAMSAP2Q08AD1 1489 aa11.75□□□□□ -0.53
CIITA-214ENST00000636238 IQGAP1P46940 1657 aa11.75□□□□□ -0.53
CIITA-214ENST00000636238 FAM135BQ49AJ0 1406 aa11.74□□□□□ -0.53
CIITA-214ENST00000636238 ERVK-7P63135 1459 aa11.74□□□□□ -0.53
CIITA-214ENST00000636238 SCAF11Q99590 1463 aaKnown RBP11.74□□□□□ -0.53
CIITA-214ENST00000636238 ABCC3O15438 1527 aa11.74□□□□□ -0.53
CIITA-214ENST00000636238 ZC3H13Q5T200 1668 aaKnown RBP11.74□□□□□ -0.53
CIITA-214ENST00000636238 NCOA2Q15596 1464 aa11.73□□□□□ -0.53
CIITA-214ENST00000636238 ARHGAP31Q2M1Z3 1444 aa11.73□□□□□ -0.53
CIITA-214ENST00000636238 ARHGAP23Q9P227 1491 aa11.73□□□□□ -0.53
CIITA-214ENST00000636238 SLIT1O75093 1534 aa11.72□□□□□ -0.53
CIITA-214ENST00000636238 MAST1Q9Y2H9 1570 aa11.71□□□□□ -0.53
CIITA-214ENST00000636238 EIF2AK4Q9P2K8 1649 aaKnown RBP11.71□□□□□ -0.54
CIITA-214ENST00000636238 EID1Q9Y6B2 187 aa11.7□□□□□ -0.54
CIITA-214ENST00000636238 RGS17Q9UGC6 210 aaPredicted RBP11.69□□□□□ -0.54
CIITA-214ENST00000636238 TXNDC2Q86VQ3 553 aa11.68□□□□□ -0.54
CIITA-214ENST00000636238 LRRC9Q6ZRR7 1453 aa11.68□□□□□ -0.54
CIITA-214ENST00000636238 TMEM2Q9UHN6 1383 aa11.67□□□□□ -0.54
CIITA-214ENST00000636238 DUOX2Q9NRD8 1548 aa11.65□□□□□ -0.54
CIITA-214ENST00000636238 KCNA6P17658 529 aa11.65□□□□□ -0.54
CIITA-214ENST00000636238 LTKP29376 864 aa11.65□□□□□ -0.54
CIITA-214ENST00000636238 MYOM3Q5VTT5 1437 aa11.65□□□□□ -0.54
CIITA-214ENST00000636238 ERBINQ96RT1 1412 aa11.65□□□□□ -0.54
CIITA-214ENST00000636238 MROH1Q8NDA8 1641 aa11.64□□□□□ -0.55
CIITA-214ENST00000636238 NKTRP30414 1462 aaKnown RBP11.63□□□□□ -0.55
CIITA-214ENST00000636238 PRDM15P57071 1507 aaPredicted RBP11.63□□□□□ -0.55
CIITA-214ENST00000636238 TMEM94Q12767 1356 aa11.63□□□□□ -0.55
CIITA-214ENST00000636238 UBR1Q8IWV7 1749 aa11.63□□□□□ -0.55
CIITA-214ENST00000636238 STRCP1A6NGW2 1772 aa11.62□□□□□ -0.55
CIITA-214ENST00000636238 MAP3K1Q13233 1512 aa11.62□□□□□ -0.55
CIITA-214ENST00000636238 KANK1Q14678 1352 aa11.62□□□□□ -0.55
CIITA-214ENST00000636238 KDM5AP29375 1690 aaKnown RBP11.62□□□□□ -0.55
CIITA-214ENST00000636238 NCOA3Q9Y6Q9 1424 aa11.6□□□□□ -0.55
CIITA-214ENST00000636238 LMTK2Q8IWU2 1503 aa11.6□□□□□ -0.55
CIITA-214ENST00000636238 KIF15Q9NS87 1388 aa11.6□□□□□ -0.55
CIITA-214ENST00000636238 JCADQ9P266 1359 aa11.6□□□□□ -0.55
CIITA-214ENST00000636238 POTEAQ6S8J7 498 aa11.6□□□□□ -0.55
CIITA-214ENST00000636238 MSH6P52701 1360 aa11.59□□□□□ -0.55
CIITA-214ENST00000636238 SLC52A1Q9NWF4 448 aa11.59□□□□□ -0.55
CIITA-214ENST00000636238 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
CIITA-214ENST00000636238 EFCAB6Q5THR3 1501 aa11.59□□□□□ -0.55
CIITA-214ENST00000636238 PROSER2Q86WR7 435 aaPredicted RBP11.58□□□□□ -0.56
CIITA-214ENST00000636238 FGD6Q6ZV73 1430 aa11.58□□□□□ -0.56
CIITA-214ENST00000636238 TET3O43151 1660 aa11.57□□□□□ -0.56
CIITA-214ENST00000636238 HDGFP51858 240 aaKnown RBP11.57□□□□□ -0.56
CIITA-214ENST00000636238 VPS8Q8N3P4 1428 aa11.57□□□□□ -0.56
CIITA-214ENST00000636238 NWD1Q149M9 1564 aa11.57□□□□□ -0.56
CIITA-214ENST00000636238 SPATA31A6Q5VVP1 1343 aa11.57□□□□□ -0.56
CIITA-214ENST00000636238 NOS1P29475 1434 aa11.56□□□□□ -0.56
CIITA-214ENST00000636238 SENP3Q9H4L4 574 aaPredicted RBP11.56□□□□□ -0.56
CIITA-214ENST00000636238 SLAIN2Q9P270 581 aa11.56□□□□□ -0.56
CIITA-214ENST00000636238 IDI1Q13907 227 aa11.55□□□□□ -0.56
CIITA-214ENST00000636238 ZNF772Q68DY9 489 aaPredicted RBP11.55□□□□□ -0.56
CIITA-214ENST00000636238 RPRD2Q5VT52 1461 aaKnown RBP11.54□□□□□ -0.56
CIITA-214ENST00000636238 PLEKHG1Q9ULL1 1385 aa11.54□□□□□ -0.56
CIITA-214ENST00000636238 PIK3C2BO00750 1634 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 ABCC5O15440 1437 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 ROBO1Q9Y6N7 1651 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 ADGRB3O60242 1522 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 PIK3R4Q99570 1358 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 ANKRD30AQ9BXX3 1397 aa11.53□□□□□ -0.56
CIITA-214ENST00000636238 CDK12Q9NYV4 1490 aaPredicted RBP11.51□□□□□ -0.57
CIITA-214ENST00000636238 XIRP1Q702N8 1843 aaKnown RBP11.51□□□□□ -0.57
CIITA-214ENST00000636238 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms