RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 POLR1AO95602 1720 aaPredicted RBP25.12■■□□□ 1.61
PDLIM3-213ENST00000629667 CCDC141Q6ZP82 1450 aa25.1■■□□□ 1.61
PDLIM3-213ENST00000629667 TNRQ92752 1358 aa25.08■■□□□ 1.61
PDLIM3-213ENST00000629667 KDM5DQ9BY66 1539 aa25.08■■□□□ 1.61
PDLIM3-213ENST00000629667 FBXO31Q5XUX0 539 aaPredicted RBP25.08■■□□□ 1.61
PDLIM3-213ENST00000629667 RSPH4AQ5TD94 716 aa25.07■■□□□ 1.6
PDLIM3-213ENST00000629667 CAMSAP2Q08AD1 1489 aa25.07■■□□□ 1.6
PDLIM3-213ENST00000629667 FAM135AQ9P2D6 1515 aa25.07■■□□□ 1.6
PDLIM3-213ENST00000629667 PZPP20742 1482 aa25.06■■□□□ 1.6
PDLIM3-213ENST00000629667 NCOA2Q15596 1464 aa25.06■■□□□ 1.6
PDLIM3-213ENST00000629667 WASHC2CQ9Y4E1 1318 aa25.06■■□□□ 1.6
PDLIM3-213ENST00000629667 NEURL4Q96JN8 1562 aa25.03■■□□□ 1.6
PDLIM3-213ENST00000629667 CPS1P31327 1500 aa25.02■■□□□ 1.6
PDLIM3-213ENST00000629667 SCAF1Q9H7N4 1312 aaKnown RBP25.01■■□□□ 1.59
PDLIM3-213ENST00000629667 ANKLE2Q86XL3 938 aa25■■□□□ 1.59
PDLIM3-213ENST00000629667 TSPY4P0CV99 314 aa24.99■■□□□ 1.59
PDLIM3-213ENST00000629667 TSPY10P0CW01 314 aa24.99■■□□□ 1.59
PDLIM3-213ENST00000629667 THEMISQ8N1K5 641 aaPredicted RBP24.99■■□□□ 1.59
PDLIM3-213ENST00000629667 SHANK2Q9UPX8 1470 aa24.99■■□□□ 1.59
PDLIM3-213ENST00000629667 ARHGEF5Q12774 1597 aa24.98■■□□□ 1.59
PDLIM3-213ENST00000629667 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.98■■□□□ 1.59
PDLIM3-213ENST00000629667 TOM1O60784 492 aa24.98■■□□□ 1.59
PDLIM3-213ENST00000629667 NLRP1Q9C000 1473 aa24.97■■□□□ 1.59
PDLIM3-213ENST00000629667 MIA2Q96PC5 1412 aa24.97■■□□□ 1.59
PDLIM3-213ENST00000629667 PIP4K2BP78356 416 aa24.97■■□□□ 1.59
PDLIM3-213ENST00000629667 UGGT1Q9NYU2 1555 aa24.97■■□□□ 1.59
PDLIM3-213ENST00000629667 HSPA1LP34931 641 aa24.93■■□□□ 1.58
PDLIM3-213ENST00000629667 DEPDC5O75140 1603 aa24.92■■□□□ 1.58
PDLIM3-213ENST00000629667 VWDEQ8N2E2 1590 aa24.91■■□□□ 1.58
PDLIM3-213ENST00000629667 NPHP4O75161 1426 aaPredicted RBP24.9■■□□□ 1.58
PDLIM3-213ENST00000629667 ZC3H13Q5T200 1668 aaKnown RBP24.9■■□□□ 1.58
PDLIM3-213ENST00000629667 RNF17Q9BXT8 1623 aaKnown RBP24.9■■□□□ 1.58
PDLIM3-213ENST00000629667 MED14O60244 1454 aa24.89■■□□□ 1.58
PDLIM3-213ENST00000629667 IQGAP1P46940 1657 aa24.88■■□□□ 1.57
PDLIM3-213ENST00000629667 MAST1Q9Y2H9 1570 aa24.87■■□□□ 1.57
PDLIM3-213ENST00000629667 ABCC3O15438 1527 aa24.86■■□□□ 1.57
PDLIM3-213ENST00000629667 MED1Q15648 1581 aaPredicted RBP24.86■■□□□ 1.57
PDLIM3-213ENST00000629667 LRRC9Q6ZRR7 1453 aa24.86■■□□□ 1.57
PDLIM3-213ENST00000629667 EIF2AK4Q9P2K8 1649 aaKnown RBP24.85■■□□□ 1.57
PDLIM3-213ENST00000629667 CFAP65Q6ZU64 1925 aaKnown RBP24.84■■□□□ 1.57
PDLIM3-213ENST00000629667 CEP152O94986 1710 aa24.81■■□□□ 1.56
PDLIM3-213ENST00000629667 VPS8Q8N3P4 1428 aa24.81■■□□□ 1.56
PDLIM3-213ENST00000629667 ERVK-7P63135 1459 aa24.81■■□□□ 1.56
PDLIM3-213ENST00000629667 STRCP1A6NGW2 1772 aa24.8■■□□□ 1.56
PDLIM3-213ENST00000629667 MROH1Q8NDA8 1641 aa24.78■■□□□ 1.56
PDLIM3-213ENST00000629667 ALKQ9UM73 1620 aa24.78■■□□□ 1.56
PDLIM3-213ENST00000629667 UBR1Q8IWV7 1749 aa24.77■■□□□ 1.56
PDLIM3-213ENST00000629667 SYNMO15061 1565 aa24.76■■□□□ 1.55
PDLIM3-213ENST00000629667 MYOM3Q5VTT5 1437 aa24.75■■□□□ 1.55
PDLIM3-213ENST00000629667 LRRC7Q96NW7 1537 aa24.75■■□□□ 1.55
PDLIM3-213ENST00000629667 DUOX2Q9NRD8 1548 aa24.75■■□□□ 1.55
PDLIM3-213ENST00000629667 KANK4Q5T7N3 995 aaPredicted RBP24.74■■□□□ 1.55
PDLIM3-213ENST00000629667 MAP3K1Q13233 1512 aa24.73■■□□□ 1.55
PDLIM3-213ENST00000629667 PHF23Q9BUL5 403 aaPredicted RBP24.73■■□□□ 1.55
PDLIM3-213ENST00000629667 SENP3Q9H4L4 574 aaPredicted RBP24.71■■□□□ 1.55
PDLIM3-213ENST00000629667 SCAF11Q99590 1463 aaKnown RBP24.7■■□□□ 1.55
PDLIM3-213ENST00000629667 LOC105371045A0A1W2PR82 267 aa24.68■■□□□ 1.54
PDLIM3-213ENST00000629667 TXNDC2Q86VQ3 553 aa24.67■■□□□ 1.54
PDLIM3-213ENST00000629667 KIF15Q9NS87 1388 aa24.67■■□□□ 1.54
PDLIM3-213ENST00000629667 PRDM15P57071 1507 aaPredicted RBP24.66■■□□□ 1.54
PDLIM3-213ENST00000629667 SLIT1O75093 1534 aa24.66■■□□□ 1.54
PDLIM3-213ENST00000629667 CROCC2H7BZ55 1655 aa24.66■■□□□ 1.54
PDLIM3-213ENST00000629667 LTKP29376 864 aa24.65■■□□□ 1.54
PDLIM3-213ENST00000629667 ARHGAP31Q2M1Z3 1444 aa24.65■■□□□ 1.54
PDLIM3-213ENST00000629667 ARHGAP23Q9P227 1491 aa24.64■■□□□ 1.54
PDLIM3-213ENST00000629667 ERBINQ96RT1 1412 aa24.64■■□□□ 1.54
PDLIM3-213ENST00000629667 EID1Q9Y6B2 187 aa24.64■■□□□ 1.54
PDLIM3-213ENST00000629667 RRP7BPQ9NSQ0 103 aa24.63■■□□□ 1.53
PDLIM3-213ENST00000629667 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.62■■□□□ 1.53
PDLIM3-213ENST00000629667 XIRP1Q702N8 1843 aaKnown RBP24.61■■□□□ 1.53
PDLIM3-213ENST00000629667 PIK3C2BO00750 1634 aa24.61■■□□□ 1.53
PDLIM3-213ENST00000629667 PTPN23Q9H3S7 1636 aa24.61■■□□□ 1.53
PDLIM3-213ENST00000629667 ABCC5O15440 1437 aa24.61■■□□□ 1.53
PDLIM3-213ENST00000629667 STAG3Q9UJ98 1225 aa24.59■■□□□ 1.53
PDLIM3-213ENST00000629667 KANK1Q14678 1352 aa24.58■■□□□ 1.53
PDLIM3-213ENST00000629667 APLP2Q06481 763 aa24.56■■□□□ 1.52
PDLIM3-213ENST00000629667 TMEM2Q9UHN6 1383 aa24.55■■□□□ 1.52
PDLIM3-213ENST00000629667 DAPK1P53355 1430 aa24.55■■□□□ 1.52
PDLIM3-213ENST00000629667 KDM5AP29375 1690 aaKnown RBP24.54■■□□□ 1.52
PDLIM3-213ENST00000629667 EFCAB6Q5THR3 1501 aa24.52■■□□□ 1.52
PDLIM3-213ENST00000629667 IDI1Q13907 227 aa24.5■■□□□ 1.51
PDLIM3-213ENST00000629667 ANKRD30AQ9BXX3 1397 aa24.5■■□□□ 1.51
PDLIM3-213ENST00000629667 CHIC2Q9UKJ5 165 aa24.49■■□□□ 1.51
PDLIM3-213ENST00000629667 FGD6Q6ZV73 1430 aa24.49■■□□□ 1.51
PDLIM3-213ENST00000629667 LMTK2Q8IWU2 1503 aa24.49■■□□□ 1.51
PDLIM3-213ENST00000629667 FAM135BQ49AJ0 1406 aa24.46■■□□□ 1.51
PDLIM3-213ENST00000629667 TMEM94Q12767 1356 aa24.46■■□□□ 1.51
PDLIM3-213ENST00000629667 KCNA6P17658 529 aa24.45■■□□□ 1.5
PDLIM3-213ENST00000629667 SLC26A8Q96RN1 970 aa24.45■■□□□ 1.5
PDLIM3-213ENST00000629667 TET3O43151 1660 aa24.43■■□□□ 1.5
PDLIM3-213ENST00000629667 PROSER2Q86WR7 435 aaPredicted RBP24.43■■□□□ 1.5
PDLIM3-213ENST00000629667 RGS17Q9UGC6 210 aaPredicted RBP24.43■■□□□ 1.5
PDLIM3-213ENST00000629667 ADGRB3O60242 1522 aa24.42■■□□□ 1.5
PDLIM3-213ENST00000629667 ROBO1Q9Y6N7 1651 aa24.41■■□□□ 1.5
PDLIM3-213ENST00000629667 NOS1P29475 1434 aa24.41■■□□□ 1.5
PDLIM3-213ENST00000629667 BCANQ96GW7 911 aa24.4■■□□□ 1.5
PDLIM3-213ENST00000629667 RBM33Q96EV2 1170 aaKnown RBP24.39■■□□□ 1.49
PDLIM3-213ENST00000629667 SLC52A1Q9NWF4 448 aa24.39■■□□□ 1.49
PDLIM3-213ENST00000629667 NKTRP30414 1462 aaKnown RBP24.37■■□□□ 1.49
PDLIM3-213ENST00000629667 NWD1Q149M9 1564 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms