RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	A2M	P01023	1474 aa		14.22	□□□□□ -0.13
PDLIM5-223	ENST00000627587	CAMSAP2	Q08AD1	1489 aa		14.22	□□□□□ -0.13
PDLIM5-223	ENST00000627587	ATP7A	Q04656	1500 aa		14.22	□□□□□ -0.13
PDLIM5-223	ENST00000627587	PKD2	Q13563	968 aa		14.21	□□□□□ -0.13
PDLIM5-223	ENST00000627587	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.21	□□□□□ -0.14
PDLIM5-223	ENST00000627587	CROCC2	H7BZ55	1655 aa		14.2	□□□□□ -0.14
PDLIM5-223	ENST00000627587	RAB3GAP2	Q9H2M9	1393 aa		14.2	□□□□□ -0.14
PDLIM5-223	ENST00000627587	LTBP4	Q8N2S1	1624 aa		14.2	□□□□□ -0.14
PDLIM5-223	ENST00000627587	CAMSAP1	Q5T5Y3	1602 aa		14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	GGT6	Q6P531	493 aa		14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	PLXNC1	O60486	1568 aa		14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	INO80	Q9ULG1	1556 aa	Predicted RBP	14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	SETD5	Q9C0A6	1442 aa		14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	GCC2	Q8IWJ2	1684 aa		14.19	□□□□□ -0.14
PDLIM5-223	ENST00000627587	RSPH4A	Q5TD94	716 aa		14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	CCER1	Q8TC90	406 aa	Predicted RBP	14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	RTEL1-TNFRSF6B	F6WH68	1400 aa		14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	DAPK1	P53355	1430 aa		14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	HFM1	A2PYH4	1435 aa		14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	ABCC5	O15440	1437 aa		14.18	□□□□□ -0.14
PDLIM5-223	ENST00000627587	DISP3	Q9P2K9	1392 aa		14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	ADGB	Q8N7X0	1667 aa		14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	PLA2R1	Q13018	1463 aa		14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	DHX57	Q6P158	1386 aa	Known RBP	14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	CLTC	Q00610	1675 aa	Known RBP	14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	NCKAP5L	Q9HCH0	1330 aa		14.17	□□□□□ -0.14
PDLIM5-223	ENST00000627587	NAIP	Q13075	1403 aa		14.16	□□□□□ -0.14
PDLIM5-223	ENST00000627587	DHX29	Q7Z478	1369 aa	Known RBP	14.15	□□□□□ -0.14
PDLIM5-223	ENST00000627587	ZNF142	P52746	1687 aa	Predicted RBP	14.14	□□□□□ -0.15
PDLIM5-223	ENST00000627587	MBD5	Q9P267	1494 aa		14.14	□□□□□ -0.15
PDLIM5-223	ENST00000627587	ARHGEF5	Q12774	1597 aa		14.13	□□□□□ -0.15
PDLIM5-223	ENST00000627587	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	14.12	□□□□□ -0.15
PDLIM5-223	ENST00000627587	MYO3A	Q8NEV4	1616 aa		14.12	□□□□□ -0.15
PDLIM5-223	ENST00000627587	FAM135A	Q9P2D6	1515 aa		14.11	□□□□□ -0.15
PDLIM5-223	ENST00000627587	SOCS7	O14512	581 aa		14.11	□□□□□ -0.15
PDLIM5-223	ENST00000627587	ZEB1	P37275	1124 aa	Predicted RBP	14.11	□□□□□ -0.15
PDLIM5-223	ENST00000627587	A2ML1	A8K2U0	1454 aa		14.11	□□□□□ -0.15
PDLIM5-223	ENST00000627587	CHIC2	Q9UKJ5	165 aa		14.1	□□□□□ -0.15
PDLIM5-223	ENST00000627587	ROCK1	Q13464	1354 aa		14.1	□□□□□ -0.15
PDLIM5-223	ENST00000627587	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	14.09	□□□□□ -0.15
PDLIM5-223	ENST00000627587	UBAP1L	F5GYI3	381 aa		14.09	□□□□□ -0.15
PDLIM5-223	ENST00000627587	KIF3B	O15066	747 aa		14.09	□□□□□ -0.15
PDLIM5-223	ENST00000627587	ADGRL2	O95490	1459 aa		14.09	□□□□□ -0.15
PDLIM5-223	ENST00000627587	SHANK2	Q9UPX8	1470 aa		14.08	□□□□□ -0.15
PDLIM5-223	ENST00000627587	TSPY4	P0CV99	314 aa		14.08	□□□□□ -0.16
PDLIM5-223	ENST00000627587	TSPY10	P0CW01	314 aa		14.08	□□□□□ -0.16
PDLIM5-223	ENST00000627587	ILDR2	Q71H61	639 aa		14.08	□□□□□ -0.16
PDLIM5-223	ENST00000627587	CCDC141	Q6ZP82	1450 aa		14.08	□□□□□ -0.16
PDLIM5-223	ENST00000627587	RRP7BP	Q9NSQ0	103 aa		14.08	□□□□□ -0.16
PDLIM5-223	ENST00000627587	WASHC2C	Q9Y4E1	1318 aa		14.07	□□□□□ -0.16
PDLIM5-223	ENST00000627587	TNR	Q92752	1358 aa		14.07	□□□□□ -0.16
PDLIM5-223	ENST00000627587	THEMIS	Q8N1K5	641 aa	Predicted RBP	14.06	□□□□□ -0.16
PDLIM5-223	ENST00000627587	SPATA31D1	Q6ZQQ2	1576 aa		14.06	□□□□□ -0.16
PDLIM5-223	ENST00000627587	SCAF1	Q9H7N4	1312 aa	Known RBP	14.06	□□□□□ -0.16
PDLIM5-223	ENST00000627587	ANKLE2	Q86XL3	938 aa		14.05	□□□□□ -0.16
PDLIM5-223	ENST00000627587	PZP	P20742	1482 aa		14.05	□□□□□ -0.16
PDLIM5-223	ENST00000627587	KDM5D	Q9BY66	1539 aa		14.04	□□□□□ -0.16
PDLIM5-223	ENST00000627587	MAST1	Q9Y2H9	1570 aa		14.04	□□□□□ -0.16
PDLIM5-223	ENST00000627587	CLSPN	Q9HAW4	1339 aa		14.03	□□□□□ -0.16
PDLIM5-223	ENST00000627587	TOM1	O60784	492 aa		14.03	□□□□□ -0.16
PDLIM5-223	ENST00000627587	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.03	□□□□□ -0.16
PDLIM5-223	ENST00000627587	CPS1	P31327	1500 aa		14.02	□□□□□ -0.17
PDLIM5-223	ENST00000627587	NLRP1	Q9C000	1473 aa		14.02	□□□□□ -0.17
PDLIM5-223	ENST00000627587	POLR1A	O95602	1720 aa	Predicted RBP	14	□□□□□ -0.17
PDLIM5-223	ENST00000627587	ANKRD30A	Q9BXX3	1397 aa		13.98	□□□□□ -0.17
PDLIM5-223	ENST00000627587	MED14	O60244	1454 aa		13.97	□□□□□ -0.17
PDLIM5-223	ENST00000627587	UGGT1	Q9NYU2	1555 aa		13.97	□□□□□ -0.17
PDLIM5-223	ENST00000627587	NEURL4	Q96JN8	1562 aa		13.96	□□□□□ -0.17
PDLIM5-223	ENST00000627587	DEPDC5	O75140	1603 aa		13.96	□□□□□ -0.18
PDLIM5-223	ENST00000627587	NPHP4	O75161	1426 aa	Predicted RBP	13.95	□□□□□ -0.18
PDLIM5-223	ENST00000627587	ANKRD50	Q9ULJ7	1429 aa		13.95	□□□□□ -0.18
PDLIM5-223	ENST00000627587	RNF17	Q9BXT8	1623 aa	Known RBP	13.94	□□□□□ -0.18
PDLIM5-223	ENST00000627587	KIF15	Q9NS87	1388 aa		13.94	□□□□□ -0.18
PDLIM5-223	ENST00000627587	ZC3H13	Q5T200	1668 aa	Known RBP	13.94	□□□□□ -0.18
PDLIM5-223	ENST00000627587	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.93	□□□□□ -0.18
PDLIM5-223	ENST00000627587	PIP4K2B	P78356	416 aa		13.93	□□□□□ -0.18
PDLIM5-223	ENST00000627587	HSPA1L	P34931	641 aa		13.92	□□□□□ -0.18
PDLIM5-223	ENST00000627587	VWDE	Q8N2E2	1590 aa		13.92	□□□□□ -0.18
PDLIM5-223	ENST00000627587	ABCC3	O15438	1527 aa		13.91	□□□□□ -0.18
PDLIM5-223	ENST00000627587	DUOX2	Q9NRD8	1548 aa		13.89	□□□□□ -0.19
PDLIM5-223	ENST00000627587	ERVK-7	P63135	1459 aa		13.89	□□□□□ -0.19
PDLIM5-223	ENST00000627587	UNC13B	O14795	1591 aa		13.89	□□□□□ -0.19
PDLIM5-223	ENST00000627587	IQGAP1	P46940	1657 aa		13.89	□□□□□ -0.19
PDLIM5-223	ENST00000627587	SIN3A	Q96ST3	1273 aa		13.89	□□□□□ -0.19
PDLIM5-223	ENST00000627587	MPHOSPH9	Q99550	1183 aa		13.88	□□□□□ -0.19
PDLIM5-223	ENST00000627587	ACIN1	Q9UKV3	1341 aa	Known RBP	13.88	□□□□□ -0.19
PDLIM5-223	ENST00000627587	ARHGAP31	Q2M1Z3	1444 aa		13.87	□□□□□ -0.19
PDLIM5-223	ENST00000627587	TRIM52	Q96A61	297 aa		13.87	□□□□□ -0.19
PDLIM5-223	ENST00000627587	EID1	Q9Y6B2	187 aa		13.86	□□□□□ -0.19
PDLIM5-223	ENST00000627587	TXNDC2	Q86VQ3	553 aa		13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	ERBIN	Q96RT1	1412 aa		13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	KANK1	Q14678	1352 aa		13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	MROH1	Q8NDA8	1641 aa		13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	MED1	Q15648	1581 aa	Predicted RBP	13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	LRRC7	Q96NW7	1537 aa		13.84	□□□□□ -0.19
PDLIM5-223	ENST00000627587	SYNM	O15061	1565 aa		13.83	□□□□□ -0.19
PDLIM5-223	ENST00000627587	SCAF11	Q99590	1463 aa	Known RBP	13.83	□□□□□ -0.2
PDLIM5-223	ENST00000627587	IQGAP3	Q86VI3	1631 aa		13.83	□□□□□ -0.2
PDLIM5-223	ENST00000627587	UBR1	Q8IWV7	1749 aa		13.83	□□□□□ -0.2
PDLIM5-223	ENST00000627587	SLIT1	O75093	1534 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms