RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 KDM5DQ9BY66 1539 aa25.06■■□□□ 1.6
PCF11-207ENST00000624931 TEX14Q8IWB6 1497 aa25.06■■□□□ 1.6
PCF11-207ENST00000624931 NUP155O75694 1391 aa25.06■■□□□ 1.6
PCF11-207ENST00000624931 SLC4A1APQ9BWU0 796 aaKnown RBP25.05■■□□□ 1.6
PCF11-207ENST00000624931 ABCA6Q8N139 1617 aa25.05■■□□□ 1.6
PCF11-207ENST00000624931 MLH3Q9UHC1 1453 aa25.03■■□□□ 1.6
PCF11-207ENST00000624931 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25■■□□□ 1.598e-11■■■■□ 26.5
PCF11-207ENST00000624931 FAM135AQ9P2D6 1515 aa25■■□□□ 1.59
PCF11-207ENST00000624931 MAGI2Q86UL8 1455 aa24.99■■□□□ 1.59
PCF11-207ENST00000624931 TIMELESSQ9UNS1 1208 aa24.98■■□□□ 1.59
PCF11-207ENST00000624931 DIP2CQ9Y2E4 1556 aa24.97■■□□□ 1.59
PCF11-207ENST00000624931 IQGAP3Q86VI3 1631 aa24.97■■□□□ 1.59
PCF11-207ENST00000624931 A2MP01023 1474 aa24.96■■□□□ 1.59
PCF11-207ENST00000624931 DHX29Q7Z478 1369 aaKnown RBP24.96■■□□□ 1.59
PCF11-207ENST00000624931 YEATS2Q9ULM3 1422 aa24.96■■□□□ 1.59
PCF11-207ENST00000624931 PKD2Q13563 968 aa24.95■■□□□ 1.59
PCF11-207ENST00000624931 COL17A1Q9UMD9 1497 aaPredicted RBP24.95■■□□□ 1.58
PCF11-207ENST00000624931 DEPDC5O75140 1603 aa24.95■■□□□ 1.58
PCF11-207ENST00000624931 EIF2AK4Q9P2K8 1649 aaKnown RBP24.95■■□□□ 1.58
PCF11-207ENST00000624931 SUPT16HQ9Y5B9 1047 aaKnown RBP24.95■■□□□ 1.58
PCF11-207ENST00000624931 ZMYM4Q5VZL5 1548 aa24.94■■□□□ 1.58
PCF11-207ENST00000624931 ANKRD30BQ9BXX2 1392 aa24.93■■□□□ 1.58
PCF11-207ENST00000624931 MROH1Q8NDA8 1641 aa24.92■■□□□ 1.58
PCF11-207ENST00000624931 KIF3BO15066 747 aa24.9■■□□□ 1.58
PCF11-207ENST00000624931 TRHP20396 242 aaPredicted RBP24.88■■□□□ 1.57
PCF11-207ENST00000624931 PRDM15P57071 1507 aaPredicted RBP24.86■■□□□ 1.57
PCF11-207ENST00000624931 RNF17Q9BXT8 1623 aaKnown RBP24.86■■□□□ 1.57
PCF11-207ENST00000624931 VWDEQ8N2E2 1590 aa24.84■■□□□ 1.57
PCF11-207ENST00000624931 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
PCF11-207ENST00000624931 BCORL1Q5H9F3 1711 aa24.82■■□□□ 1.56
PCF11-207ENST00000624931 RPRD2Q5VT52 1461 aaKnown RBP24.81■■□□□ 1.56
PCF11-207ENST00000624931 E9PCH4 1651 aa24.8■■□□□ 1.56
PCF11-207ENST00000624931 CEP152O94986 1710 aa24.8■■□□□ 1.56
PCF11-207ENST00000624931 TET3O43151 1660 aa24.78■■□□□ 1.56
PCF11-207ENST00000624931 SIGLEC1Q9BZZ2 1709 aa24.78■■□□□ 1.56
PCF11-207ENST00000624931 ARHGEF40Q8TER5 1519 aa24.77■■□□□ 1.56
PCF11-207ENST00000624931 KANK1Q14678 1352 aa24.77■■□□□ 1.56
PCF11-207ENST00000624931 PLA2R1Q13018 1463 aa24.76■■□□□ 1.55
PCF11-207ENST00000624931 ATP10AO60312 1499 aa24.76■■□□□ 1.55
PCF11-207ENST00000624931 GGT6Q6P531 493 aa24.75■■□□□ 1.55
PCF11-207ENST00000624931 EFCAB6Q5THR3 1501 aa24.71■■□□□ 1.55
PCF11-207ENST00000624931 PPP1R15AO75807 674 aaPredicted RBP24.7■■□□□ 1.54
PCF11-207ENST00000624931 REREQ9P2R6 1566 aa24.7■■□□□ 1.54
PCF11-207ENST00000624931 ABCC3O15438 1527 aa24.69■■□□□ 1.54
PCF11-207ENST00000624931 LMTK2Q8IWU2 1503 aa24.69■■□□□ 1.54
PCF11-207ENST00000624931 L3MBTL2Q969R5 705 aa24.69■■□□□ 1.54
PCF11-207ENST00000624931 SPHKAPQ2M3C7 1700 aa24.68■■□□□ 1.54
PCF11-207ENST00000624931 CCER2I3L3R5 266 aa24.67■■□□□ 1.54
PCF11-207ENST00000624931 CCDC144AA2RUR9 1427 aa24.65■■□□□ 1.54
PCF11-207ENST00000624931 CAMSAP1Q5T5Y3 1602 aa24.64■■□□□ 1.54
PCF11-207ENST00000624931 TRPM2O94759 1503 aa24.63■■□□□ 1.53
PCF11-207ENST00000624931 AGLP35573 1532 aa24.63■■□□□ 1.53
PCF11-207ENST00000624931 TSHZ2Q9NRE2 1034 aa24.61■■□□□ 1.53
PCF11-207ENST00000624931 WASHC2CQ9Y4E1 1318 aa24.61■■□□□ 1.53
PCF11-207ENST00000624931 PTPRTO14522 1441 aa24.61■■□□□ 1.53
PCF11-207ENST00000624931 CLTCL1P53675 1640 aa24.61■■□□□ 1.53
PCF11-207ENST00000624931 ZC3H13Q5T200 1668 aaKnown RBP24.59■■□□□ 1.53
PCF11-207ENST00000624931 UGGT1Q9NYU2 1555 aa24.59■■□□□ 1.53
PCF11-207ENST00000624931 NPATQ14207 1427 aa24.59■■□□□ 1.53
PCF11-207ENST00000624931 CFAP65Q6ZU64 1925 aaKnown RBP24.57■■□□□ 1.52
PCF11-207ENST00000624931 MLECQ14165 292 aa24.55■■□□□ 1.52
PCF11-207ENST00000624931 DDX10Q13206 875 aaKnown RBP24.54■■□□□ 1.52
PCF11-207ENST00000624931 NBPF8Q3BBV2 869 aa24.54■■□□□ 1.52
PCF11-207ENST00000624931 CLTCQ00610 1675 aaKnown RBP24.52■■□□□ 1.52
PCF11-207ENST00000624931 ANP32CO43423 234 aa24.52■■□□□ 1.52
PCF11-207ENST00000624931 RGL3Q3MIN7 710 aa24.5■■□□□ 1.51
PCF11-207ENST00000624931 NEFLP07196 543 aa24.49■■□□□ 1.51
PCF11-207ENST00000624931 SPATA31E1Q6ZUB1 1445 aa24.48■■□□□ 1.51
PCF11-207ENST00000624931 ZNF326Q5BKZ1 582 aaKnown RBP24.48■■□□□ 1.51
PCF11-207ENST00000624931 KDM2AQ9Y2K7 1162 aa24.47■■□□□ 1.51
PCF11-207ENST00000624931 SYNMO15061 1565 aa24.47■■□□□ 1.51
PCF11-207ENST00000624931 ARID4BQ4LE39 1312 aaPredicted RBP24.47■■□□□ 1.51
PCF11-207ENST00000624931 MROH2AA6NES4 1674 aa24.46■■□□□ 1.51
PCF11-207ENST00000624931 DCAF11Q8TEB1 546 aa24.46■■□□□ 1.51
PCF11-207ENST00000624931 ARHGAP31Q2M1Z3 1444 aa24.46■■□□□ 1.51
PCF11-207ENST00000624931 NOS1P29475 1434 aa24.44■■□□□ 1.5
PCF11-207ENST00000624931 PREX1Q8TCU6 1659 aa24.44■■□□□ 1.5
PCF11-207ENST00000624931 CNTLNQ9NXG0 1405 aa24.44■■□□□ 1.5
PCF11-207ENST00000624931 ANP32EQ9BTT0 268 aa24.43■■□□□ 1.5
PCF11-207ENST00000624931 KIF1BO60333 1816 aa24.42■■□□□ 1.5
PCF11-207ENST00000624931 UHRF1BP1Q6BDS2 1440 aa24.42■■□□□ 1.5
PCF11-207ENST00000624931 HIRIP3Q9BW71 556 aaPredicted RBP24.41■■□□□ 1.5
PCF11-207ENST00000624931 FKBP8Q14318 412 aa24.41■■□□□ 1.5
PCF11-207ENST00000624931 PIK3C2BO00750 1634 aa24.39■■□□□ 1.5
PCF11-207ENST00000624931 FBXO31Q5XUX0 539 aaPredicted RBP24.38■■□□□ 1.49
PCF11-207ENST00000624931 ADGRB3O60242 1522 aa24.38■■□□□ 1.49
PCF11-207ENST00000624931 ERVK-7P63135 1459 aa24.37■■□□□ 1.49
PCF11-207ENST00000624931 PPP6R1Q9UPN7 881 aa24.37■■□□□ 1.49
PCF11-207ENST00000624931 PRAG1Q86YV5 1406 aa24.36■■□□□ 1.49
PCF11-207ENST00000624931 RALGAPBQ86X10 1494 aa24.35■■□□□ 1.49
PCF11-207ENST00000624931 NEURL4Q96JN8 1562 aa24.34■■□□□ 1.49
PCF11-207ENST00000624931 CHGAP10645 457 aaKnown RBP24.34■■□□□ 1.49
PCF11-207ENST00000624931 TRPM1Q7Z4N2 1603 aa24.33■■□□□ 1.49
PCF11-207ENST00000624931 MADDQ8WXG6 1647 aa24.32■■□□□ 1.48
PCF11-207ENST00000624931 IFT172Q9UG01 1749 aa24.32■■□□□ 1.48
PCF11-207ENST00000624931 ESF1Q9H501 851 aaKnown RBP24.3■■□□□ 1.48
PCF11-207ENST00000624931 SPATA31D1Q6ZQQ2 1576 aa24.3■■□□□ 1.48
PCF11-207ENST00000624931 HSPA5P11021 654 aaKnown RBP24.3■■□□□ 1.48
PCF11-207ENST00000624931 ZMYM3Q14202 1370 aa24.29■■□□□ 1.48
PCF11-207ENST00000624931 FER1L4A9Z1Z3 1794 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms