RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 JPH4Q96JJ6 628 aa20.97■□□□□ 0.95
NPHP4-211ENST00000622020 BRD4O60885 1362 aaPredicted RBP20.96■□□□□ 0.95
NPHP4-211ENST00000622020 NLRP13Q86W25 1043 aa20.96■□□□□ 0.95
NPHP4-211ENST00000622020 LRPPRCP42704 1394 aaKnown RBP20.95■□□□□ 0.94
NPHP4-211ENST00000622020 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
NPHP4-211ENST00000622020 C9orf84Q5VXU9 1444 aa20.93■□□□□ 0.94
NPHP4-211ENST00000622020 RTN4Q9NQC3 1192 aaKnown RBP20.93■□□□□ 0.94
NPHP4-211ENST00000622020 KTN1Q86UP2 1357 aaKnown RBP20.93■□□□□ 0.94
NPHP4-211ENST00000622020 GRIN2AQ12879 1464 aa20.93■□□□□ 0.94
NPHP4-211ENST00000622020 RALGAPBQ86X10 1494 aa20.93■□□□□ 0.94
NPHP4-211ENST00000622020 NEFMP07197 916 aa20.91■□□□□ 0.94
NPHP4-211ENST00000622020 CRBNQ96SW2 442 aa20.91■□□□□ 0.94
NPHP4-211ENST00000622020 PANK3Q9H999 370 aa20.91■□□□□ 0.94
NPHP4-211ENST00000622020 ANO8Q9HCE9 1232 aaPredicted RBP20.9■□□□□ 0.94
NPHP4-211ENST00000622020 TCERG1O14776 1098 aaKnown RBP20.9■□□□□ 0.94
NPHP4-211ENST00000622020 C20orf194Q5TEA3 1177 aa20.9■□□□□ 0.94
NPHP4-211ENST00000622020 SLC4A3P48751 1232 aa20.89■□□□□ 0.93
NPHP4-211ENST00000622020 UHRF1BP1Q6BDS2 1440 aa20.88■□□□□ 0.93
NPHP4-211ENST00000622020 BACH2Q9BYV9 841 aa20.88■□□□□ 0.93
NPHP4-211ENST00000622020 PER1O15534 1290 aaPredicted RBP20.87■□□□□ 0.93
NPHP4-211ENST00000622020 ADGRL2O95490 1459 aa20.86■□□□□ 0.93
NPHP4-211ENST00000622020 IL27Q8NEV9 243 aa20.86■□□□□ 0.93
NPHP4-211ENST00000622020 IFT140Q96RY7 1462 aa20.85■□□□□ 0.93
NPHP4-211ENST00000622020 ADGBQ8N7X0 1667 aa20.83■□□□□ 0.93
NPHP4-211ENST00000622020 DISP3Q9P2K9 1392 aa20.83■□□□□ 0.93
NPHP4-211ENST00000622020 ADAMTS8Q9UP79 889 aa20.82■□□□□ 0.92
NPHP4-211ENST00000622020 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
NPHP4-211ENST00000622020 CCDC144AA2RUR9 1427 aa20.81■□□□□ 0.92
NPHP4-211ENST00000622020 ITSN2Q9NZM3 1697 aa20.81■□□□□ 0.92
NPHP4-211ENST00000622020 PARD3Q8TEW0 1356 aa20.81■□□□□ 0.92
NPHP4-211ENST00000622020 CARMIL2Q6F5E8 1435 aa20.81■□□□□ 0.92
NPHP4-211ENST00000622020 PDE3BQ13370 1112 aa20.8■□□□□ 0.92
NPHP4-211ENST00000622020 TESK2Q96S53 571 aa20.78■□□□□ 0.92
NPHP4-211ENST00000622020 ATP10BO94823 1461 aa20.78■□□□□ 0.92
NPHP4-211ENST00000622020 MAGI1Q96QZ7 1491 aaPredicted RBP20.77■□□□□ 0.92
NPHP4-211ENST00000622020 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
NPHP4-211ENST00000622020 EIF4G3O43432 1585 aaKnown RBP20.76■□□□□ 0.91
NPHP4-211ENST00000622020 PRAG1Q86YV5 1406 aa20.75■□□□□ 0.91
NPHP4-211ENST00000622020 CROCC2H7BZ55 1655 aa20.75■□□□□ 0.91
NPHP4-211ENST00000622020 ARHGEF12Q9NZN5 1544 aa20.75■□□□□ 0.91
NPHP4-211ENST00000622020 RGS3P49796 1198 aa20.74■□□□□ 0.91
NPHP4-211ENST00000622020 TMF1P82094 1093 aa20.74■□□□□ 0.91
NPHP4-211ENST00000622020 CCDC146Q8IYE0 955 aa20.74■□□□□ 0.91
NPHP4-211ENST00000622020 MS4A1P11836 297 aa20.72■□□□□ 0.91
NPHP4-211ENST00000622020 WDR43Q15061 677 aaKnown RBP eCLIP20.72■□□□□ 0.91
NPHP4-211ENST00000622020 CDC42BPAQ5VT25 1732 aa20.71■□□□□ 0.91
NPHP4-211ENST00000622020 ABCC10Q5T3U5 1492 aa20.71■□□□□ 0.91
NPHP4-211ENST00000622020 FAM135AQ9P2D6 1515 aa20.71■□□□□ 0.91
NPHP4-211ENST00000622020 KNSTRNQ9Y448 316 aa20.7■□□□□ 0.9
NPHP4-211ENST00000622020 DAXXQ9UER7 740 aaPredicted RBP20.69■□□□□ 0.9
NPHP4-211ENST00000622020 KDM5DQ9BY66 1539 aa20.67■□□□□ 0.9
NPHP4-211ENST00000622020 ERBINQ96RT1 1412 aa20.67■□□□□ 0.9
NPHP4-211ENST00000622020 SYNJ2O15056 1496 aa20.67■□□□□ 0.9
NPHP4-211ENST00000622020 A2MP01023 1474 aa20.66■□□□□ 0.9
NPHP4-211ENST00000622020 PLA2R1Q13018 1463 aa20.66■□□□□ 0.9
NPHP4-211ENST00000622020 PLEKHH1Q9ULM0 1364 aa20.66■□□□□ 0.9
NPHP4-211ENST00000622020 PPP2R1AP30153 589 aa20.65■□□□□ 0.9
NPHP4-211ENST00000622020 PTPRGP23470 1445 aa20.65■□□□□ 0.9
NPHP4-211ENST00000622020 ADCY10Q96PN6 1610 aa20.64■□□□□ 0.9
NPHP4-211ENST00000622020 SHANK2Q9UPX8 1470 aa20.64■□□□□ 0.89
NPHP4-211ENST00000622020 PPM1GO15355 546 aaPredicted RBP20.64■□□□□ 0.89
NPHP4-211ENST00000622020 DUSP27Q5VZP5 1158 aa20.64■□□□□ 0.89
NPHP4-211ENST00000622020 E9PCH4 1651 aa20.63■□□□□ 0.89
NPHP4-211ENST00000622020 PLEKHH2Q8IVE3 1493 aa20.62■□□□□ 0.89
NPHP4-211ENST00000622020 COL17A1Q9UMD9 1497 aaPredicted RBP20.62■□□□□ 0.89
NPHP4-211ENST00000622020 SPINK5Q9NQ38 1064 aaPredicted RBP20.62■□□□□ 0.89
NPHP4-211ENST00000622020 CCDC141Q6ZP82 1450 aa20.61■□□□□ 0.89
NPHP4-211ENST00000622020 GOLGA2Q08379 1002 aa20.61■□□□□ 0.89
NPHP4-211ENST00000622020 NFKBIBQ15653 356 aa20.61■□□□□ 0.89
NPHP4-211ENST00000622020 BCAR3O75815 825 aa20.6■□□□□ 0.89
NPHP4-211ENST00000622020 TRPM1Q7Z4N2 1603 aa20.6■□□□□ 0.89
NPHP4-211ENST00000622020 BRPF3Q9ULD4 1205 aa20.6■□□□□ 0.89
NPHP4-211ENST00000622020 BLMP54132 1417 aaPredicted RBP20.59■□□□□ 0.89
NPHP4-211ENST00000622020 APAF1O14727 1248 aa20.59■□□□□ 0.89
NPHP4-211ENST00000622020 DDRGK1Q96HY6 314 aa20.59■□□□□ 0.89
NPHP4-211ENST00000622020 ABCA8O94911 1581 aa20.58■□□□□ 0.89
NPHP4-211ENST00000622020 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.58■□□□□ 0.89
NPHP4-211ENST00000622020 WASHC2CQ9Y4E1 1318 aa20.58■□□□□ 0.88
NPHP4-211ENST00000622020 KDM2BQ8NHM5 1336 aa20.57■□□□□ 0.88
NPHP4-211ENST00000622020 SYCP2Q9BX26 1530 aa20.57■□□□□ 0.88
NPHP4-211ENST00000622020 USP35Q9P2H5 1018 aa20.57■□□□□ 0.88
NPHP4-211ENST00000622020 CENPQQ7L2Z9 268 aaPredicted RBP20.56■□□□□ 0.88
NPHP4-211ENST00000622020 SAMD9LQ8IVG5 1584 aa20.56■□□□□ 0.88
NPHP4-211ENST00000622020 NEUROD2Q15784 382 aa20.56■□□□□ 0.88
NPHP4-211ENST00000622020 GPRASP1Q5JY77 1395 aa20.56■□□□□ 0.88
NPHP4-211ENST00000622020 MAGI2Q86UL8 1455 aa20.56■□□□□ 0.88
NPHP4-211ENST00000622020 AMER1Q5JTC6 1135 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-211ENST00000622020 C8orf34Q49A92 452 aa20.55■□□□□ 0.88
NPHP4-211ENST00000622020 NUP160Q12769 1436 aa20.55■□□□□ 0.88
NPHP4-211ENST00000622020 ARHGAP5Q13017 1502 aa20.54■□□□□ 0.88
NPHP4-211ENST00000622020 TNNT2P45379 298 aaPredicted RBP20.54■□□□□ 0.88
NPHP4-211ENST00000622020 FAM161AQ3B820 660 aa20.54■□□□□ 0.88
NPHP4-211ENST00000622020 RSPH4AQ5TD94 716 aa20.54■□□□□ 0.88
NPHP4-211ENST00000622020 DMRT2Q9Y5R5 561 aa20.54■□□□□ 0.88
NPHP4-211ENST00000622020 GSE1Q14687 1217 aa20.52■□□□□ 0.88
NPHP4-211ENST00000622020 FRAT1Q92837 279 aaPredicted RBP20.52■□□□□ 0.88
NPHP4-211ENST00000622020 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.52■□□□□ 0.88
NPHP4-211ENST00000622020 ZMYM4Q5VZL5 1548 aa20.52■□□□□ 0.87
NPHP4-211ENST00000622020 FRAT2O75474 233 aaPredicted RBP20.51■□□□□ 0.87
NPHP4-211ENST00000622020 SLFN5Q08AF3 891 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms