RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 COL17A1Q9UMD9 1497 aaPredicted RBP15.72■□□□□ 0.11
CPNE3-212ENST00000621783 CLSPNQ9HAW4 1339 aa15.71■□□□□ 0.11
CPNE3-212ENST00000621783 YEATS2Q9ULM3 1422 aa15.71■□□□□ 0.11
CPNE3-212ENST00000621783 IQGAP3Q86VI3 1631 aa15.7■□□□□ 0.1
CPNE3-212ENST00000621783 DHX29Q7Z478 1369 aaKnown RBP15.7■□□□□ 0.1
CPNE3-212ENST00000621783 ARHGEF40Q8TER5 1519 aa15.69■□□□□ 0.1
CPNE3-212ENST00000621783 BCORL1Q5H9F3 1711 aa15.69■□□□□ 0.1
CPNE3-212ENST00000621783 PLPPR3Q6T4P5 718 aa15.69■□□□□ 0.1
CPNE3-212ENST00000621783 MROH1Q8NDA8 1641 aa15.68■□□□□ 0.1
CPNE3-212ENST00000621783 RNF17Q9BXT8 1623 aaKnown RBP15.68■□□□□ 0.1
CPNE3-212ENST00000621783 ZEB1P37275 1124 aaPredicted RBP15.68■□□□□ 0.1
CPNE3-212ENST00000621783 PRDM15P57071 1507 aaPredicted RBP15.68■□□□□ 0.1
CPNE3-212ENST00000621783 FAM135AQ9P2D6 1515 aa15.68■□□□□ 0.1
CPNE3-212ENST00000621783 NUP155O75694 1391 aa15.67■□□□□ 0.1
CPNE3-212ENST00000621783 REREQ9P2R6 1566 aa15.66■□□□□ 0.1
CPNE3-212ENST00000621783 MPHOSPH9Q99550 1183 aa15.66■□□□□ 0.1
CPNE3-212ENST00000621783 VWDEQ8N2E2 1590 aa15.64■□□□□ 0.09
CPNE3-212ENST00000621783 SLC4A1APQ9BWU0 796 aaKnown RBP15.63■□□□□ 0.09
CPNE3-212ENST00000621783 ATP10AO60312 1499 aa15.63■□□□□ 0.09
CPNE3-212ENST00000621783 KIF3BO15066 747 aa15.61■□□□□ 0.09
CPNE3-212ENST00000621783 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.61■□□□□ 0.09
CPNE3-212ENST00000621783 SIGLEC1Q9BZZ2 1709 aa15.6■□□□□ 0.09
CPNE3-212ENST00000621783 TET3O43151 1660 aa15.6■□□□□ 0.09
CPNE3-212ENST00000621783 AGLP35573 1532 aa15.59■□□□□ 0.09
CPNE3-212ENST00000621783 CEP152O94986 1710 aa15.59■□□□□ 0.09
CPNE3-212ENST00000621783 KANK1Q14678 1352 aa15.58■□□□□ 0.08
CPNE3-212ENST00000621783 PKD2Q13563 968 aa15.57■□□□□ 0.08
CPNE3-212ENST00000621783 ANKRD30BQ9BXX2 1392 aa15.57■□□□□ 0.08
CPNE3-212ENST00000621783 LMTK2Q8IWU2 1503 aa15.57■□□□□ 0.08
CPNE3-212ENST00000621783 E9PCH4 1651 aa15.57■□□□□ 0.08
CPNE3-212ENST00000621783 SIN3AQ96ST3 1273 aa15.56■□□□□ 0.08
CPNE3-212ENST00000621783 ZC3H13Q5T200 1668 aaKnown RBP15.56■□□□□ 0.08
CPNE3-212ENST00000621783 ABCC3O15438 1527 aa15.55■□□□□ 0.08
CPNE3-212ENST00000621783 EFCAB6Q5THR3 1501 aa15.55■□□□□ 0.08
CPNE3-212ENST00000621783 CAMSAP1Q5T5Y3 1602 aa15.54■□□□□ 0.08
CPNE3-212ENST00000621783 POTEDQ86YR6 584 aa15.53■□□□□ 0.08
CPNE3-212ENST00000621783 RPRD2Q5VT52 1461 aaKnown RBP15.52■□□□□ 0.07
CPNE3-212ENST00000621783 NEUROD1Q13562 356 aa15.51■□□□□ 0.07
CPNE3-212ENST00000621783 SPHKAPQ2M3C7 1700 aa15.51■□□□□ 0.07
CPNE3-212ENST00000621783 GGT6Q6P531 493 aa15.5■□□□□ 0.07
CPNE3-212ENST00000621783 PLA2R1Q13018 1463 aa15.49■□□□□ 0.07
CPNE3-212ENST00000621783 TRPM2O94759 1503 aa15.48■□□□□ 0.07
CPNE3-212ENST00000621783 TONSLQ96HA7 1378 aa15.47■□□□□ 0.07
CPNE3-212ENST00000621783 CLTCQ00610 1675 aaKnown RBP15.45■□□□□ 0.06
CPNE3-212ENST00000621783 PTPRTO14522 1441 aa15.45■□□□□ 0.06
CPNE3-212ENST00000621783 NPATQ14207 1427 aa15.45■□□□□ 0.06
CPNE3-212ENST00000621783 WASHC2CQ9Y4E1 1318 aa15.44■□□□□ 0.06
CPNE3-212ENST00000621783 CCDC144AA2RUR9 1427 aa15.44■□□□□ 0.06
CPNE3-212ENST00000621783 CLTCL1P53675 1640 aa15.44■□□□□ 0.06
CPNE3-212ENST00000621783 TIMELESSQ9UNS1 1208 aa15.44■□□□□ 0.06
CPNE3-212ENST00000621783 ARHGAP31Q2M1Z3 1444 aa15.43■□□□□ 0.06
CPNE3-212ENST00000621783 MSH5O43196 834 aa15.41■□□□□ 0.06
CPNE3-212ENST00000621783 MLECQ14165 292 aa15.4■□□□□ 0.06
CPNE3-212ENST00000621783 PPP6R1Q9UPN7 881 aa15.4■□□□□ 0.06
CPNE3-212ENST00000621783 PREX1Q8TCU6 1659 aa15.4■□□□□ 0.06
CPNE3-212ENST00000621783 UGGT1Q9NYU2 1555 aa15.4■□□□□ 0.06
CPNE3-212ENST00000621783 ARID4BQ4LE39 1312 aaPredicted RBP15.4■□□□□ 0.06
CPNE3-212ENST00000621783 CNTLNQ9NXG0 1405 aa15.39■□□□□ 0.05
CPNE3-212ENST00000621783 SYNMO15061 1565 aa15.39■□□□□ 0.05
CPNE3-212ENST00000621783 MROH2AA6NES4 1674 aa15.38■□□□□ 0.05
CPNE3-212ENST00000621783 NOS1P29475 1434 aa15.38■□□□□ 0.05
CPNE3-212ENST00000621783 PIK3C2BO00750 1634 aa15.37■□□□□ 0.05
CPNE3-212ENST00000621783 FER1L4A9Z1Z3 1794 aa15.36■□□□□ 0.05
CPNE3-212ENST00000621783 ERVK-7P63135 1459 aa15.36■□□□□ 0.05
CPNE3-212ENST00000621783 NEURL4Q96JN8 1562 aa15.36■□□□□ 0.05
CPNE3-212ENST00000621783 SPATA31E1Q6ZUB1 1445 aa15.35■□□□□ 0.05
CPNE3-212ENST00000621783 L3MBTL2Q969R5 705 aa15.35■□□□□ 0.05
CPNE3-212ENST00000621783 SPATA31D1Q6ZQQ2 1576 aa15.35■□□□□ 0.05
CPNE3-212ENST00000621783 KIF1BO60333 1816 aa15.34■□□□□ 0.05
CPNE3-212ENST00000621783 ADGRB3O60242 1522 aa15.34■□□□□ 0.05
CPNE3-212ENST00000621783 PPP1R15AO75807 674 aaPredicted RBP15.34■□□□□ 0.05
CPNE3-212ENST00000621783 CFAP65Q6ZU64 1925 aaKnown RBP15.33■□□□□ 0.04
CPNE3-212ENST00000621783 ESF1Q9H501 851 aaKnown RBP15.31■□□□□ 0.04
CPNE3-212ENST00000621783 MADDQ8WXG6 1647 aa15.31■□□□□ 0.04
CPNE3-212ENST00000621783 ZMYM3Q14202 1370 aa15.3■□□□□ 0.04
CPNE3-212ENST00000621783 IFT172Q9UG01 1749 aa15.29■□□□□ 0.04
CPNE3-212ENST00000621783 C3P01024 1663 aa15.29■□□□□ 0.04
CPNE3-212ENST00000621783 ADAMTSL3P82987 1691 aa15.28■□□□□ 0.04
CPNE3-212ENST00000621783 UHRF1BP1Q6BDS2 1440 aa15.28■□□□□ 0.04
CPNE3-212ENST00000621783 RIMS1Q86UR5 1692 aaKnown RBP15.28■□□□□ 0.04
CPNE3-212ENST00000621783 FBXO31Q5XUX0 539 aaPredicted RBP15.27■□□□□ 0.04
CPNE3-212ENST00000621783 RGL3Q3MIN7 710 aa15.26■□□□□ 0.03
CPNE3-212ENST00000621783 PIAS4Q8N2W9 510 aaPredicted RBP15.26■□□□□ 0.03
CPNE3-212ENST00000621783 TMEM131LA2VDJ0 1609 aa15.25■□□□□ 0.03
CPNE3-212ENST00000621783 NBPF8Q3BBV2 869 aa15.25■□□□□ 0.03
CPNE3-212ENST00000621783 PRAG1Q86YV5 1406 aa15.25■□□□□ 0.03
CPNE3-212ENST00000621783 DCAF11Q8TEB1 546 aa15.24■□□□□ 0.03
CPNE3-212ENST00000621783 MYOM2P54296 1465 aa15.24■□□□□ 0.03
CPNE3-212ENST00000621783 RALGAPBQ86X10 1494 aa15.24■□□□□ 0.03
CPNE3-212ENST00000621783 TRPM1Q7Z4N2 1603 aa15.24■□□□□ 0.03
CPNE3-212ENST00000621783 PPLO60437 1756 aa15.24■□□□□ 0.03
CPNE3-212ENST00000621783 MYO5BQ9ULV0 1848 aa15.23■□□□□ 0.03
CPNE3-212ENST00000621783 SLC52A1Q9NWF4 448 aa15.23■□□□□ 0.03
CPNE3-212ENST00000621783 TNRQ92752 1358 aa15.23■□□□□ 0.03
CPNE3-212ENST00000621783 NEXMIFQ5QGS0 1516 aa15.22■□□□□ 0.03
CPNE3-212ENST00000621783 CHGAP10645 457 aaKnown RBP15.21■□□□□ 0.03
CPNE3-212ENST00000621783 IDI1Q13907 227 aa15.21■□□□□ 0.03
CPNE3-212ENST00000621783 ZNF326Q5BKZ1 582 aaKnown RBP15.21■□□□□ 0.03
CPNE3-212ENST00000621783 KDM2AQ9Y2K7 1162 aa15.21■□□□□ 0.03
CPNE3-212ENST00000621783 MYO3AQ8NEV4 1616 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms