RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 MAST1Q9Y2H9 1570 aa24.91■■□□□ 1.58
BRCA1-228ENST00000618469 CROCC2H7BZ55 1655 aa24.91■■□□□ 1.58
BRCA1-228ENST00000618469 NPATQ14207 1427 aa24.9■■□□□ 1.58
BRCA1-228ENST00000618469 RSPH4AQ5TD94 716 aa24.9■■□□□ 1.58
BRCA1-228ENST00000618469 GGT6Q6P531 493 aa24.89■■□□□ 1.58
BRCA1-228ENST00000618469 MYO3AQ8NEV4 1616 aa24.88■■□□□ 1.57
BRCA1-228ENST00000618469 TCOF1Q13428 1488 aaKnown RBP24.86■■□□□ 1.57
BRCA1-228ENST00000618469 DNMT1P26358 1616 aaKnown RBP24.85■■□□□ 1.57
BRCA1-228ENST00000618469 SCAF1Q9H7N4 1312 aaKnown RBP24.85■■□□□ 1.57
BRCA1-228ENST00000618469 TSPY4P0CV99 314 aa24.84■■□□□ 1.57
BRCA1-228ENST00000618469 TSPY10P0CW01 314 aa24.84■■□□□ 1.57
BRCA1-228ENST00000618469 CEP170BQ9Y4F5 1589 aaPredicted RBP24.84■■□□□ 1.57
BRCA1-228ENST00000618469 ZNF142P52746 1687 aaPredicted RBP24.83■■□□□ 1.57
BRCA1-228ENST00000618469 PTPRKQ15262 1439 aa24.82■■□□□ 1.56
BRCA1-228ENST00000618469 SHANK2Q9UPX8 1470 aa24.82■■□□□ 1.56
BRCA1-228ENST00000618469 DHX29Q7Z478 1369 aaKnown RBP24.81■■□□□ 1.56
BRCA1-228ENST00000618469 PIP4K2BP78356 416 aa24.81■■□□□ 1.56
BRCA1-228ENST00000618469 PKD2Q13563 968 aa24.81■■□□□ 1.56
BRCA1-228ENST00000618469 PPP6R1Q9UPN7 881 aa24.79■■□□□ 1.56
BRCA1-228ENST00000618469 DAPK1P53355 1430 aa24.78■■□□□ 1.56
BRCA1-228ENST00000618469 ABCC5O15440 1437 aa24.78■■□□□ 1.56
BRCA1-228ENST00000618469 PLA2R1Q13018 1463 aa24.77■■□□□ 1.56
BRCA1-228ENST00000618469 HSPA1LP34931 641 aa24.76■■□□□ 1.55
BRCA1-228ENST00000618469 EIF2AK4Q9P2K8 1649 aaKnown RBP24.75■■□□□ 1.55
BRCA1-228ENST00000618469 RNF17Q9BXT8 1623 aaKnown RBP24.72■■□□□ 1.55
BRCA1-228ENST00000618469 KIF3BO15066 747 aa24.71■■□□□ 1.55
BRCA1-228ENST00000618469 FBXO31Q5XUX0 539 aaPredicted RBP24.71■■□□□ 1.55
BRCA1-228ENST00000618469 SENP3Q9H4L4 574 aaPredicted RBP24.71■■□□□ 1.55
BRCA1-228ENST00000618469 DUOX2Q9NRD8 1548 aa24.71■■□□□ 1.55
BRCA1-228ENST00000618469 PPARGC1BQ86YN6 1023 aaKnown RBP24.7■■□□□ 1.54
BRCA1-228ENST00000618469 KDM5DQ9BY66 1539 aa24.7■■□□□ 1.54
BRCA1-228ENST00000618469 FAM50AQ14320 339 aaKnown RBP24.69■■□□□ 1.54
BRCA1-228ENST00000618469 FAM135AQ9P2D6 1515 aa24.69■■□□□ 1.54
BRCA1-228ENST00000618469 KIF15Q9NS87 1388 aa24.68■■□□□ 1.54
BRCA1-228ENST00000618469 MED1Q15648 1581 aaPredicted RBP24.68■■□□□ 1.54
BRCA1-228ENST00000618469 A2ML1A8K2U0 1454 aa24.68■■□□□ 1.54
BRCA1-228ENST00000618469 POLR1AO95602 1720 aaPredicted RBP24.66■■□□□ 1.54
BRCA1-228ENST00000618469 MROH1Q8NDA8 1641 aa24.64■■□□□ 1.54
BRCA1-228ENST00000618469 NEURL4Q96JN8 1562 aa24.64■■□□□ 1.54
BRCA1-228ENST00000618469 ZC3H13Q5T200 1668 aaKnown RBP24.64■■□□□ 1.53
BRCA1-228ENST00000618469 ERBINQ96RT1 1412 aa24.63■■□□□ 1.53
BRCA1-228ENST00000618469 TOM1O60784 492 aa24.62■■□□□ 1.53
BRCA1-228ENST00000618469 CHIC2Q9UKJ5 165 aa24.62■■□□□ 1.53
BRCA1-228ENST00000618469 ANKRD30AQ9BXX3 1397 aa24.62■■□□□ 1.53
BRCA1-228ENST00000618469 ADGRL2O95490 1459 aa24.62■■□□□ 1.53
BRCA1-228ENST00000618469 TNRQ92752 1358 aa24.61■■□□□ 1.53
BRCA1-228ENST00000618469 RRP7BPQ9NSQ0 103 aa24.6■■□□□ 1.53
BRCA1-228ENST00000618469 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.59■■□□□ 1.53
BRCA1-228ENST00000618469 CEP152O94986 1710 aa24.59■■□□□ 1.53
BRCA1-228ENST00000618469 ABCC3O15438 1527 aa24.59■■□□□ 1.53
BRCA1-228ENST00000618469 PRDM15P57071 1507 aaPredicted RBP24.59■■□□□ 1.53
BRCA1-228ENST00000618469 DEPDC5O75140 1603 aa24.57■■□□□ 1.52
BRCA1-228ENST00000618469 WASHC2CQ9Y4E1 1318 aa24.57■■□□□ 1.52
BRCA1-228ENST00000618469 CPS1P31327 1500 aa24.56■■□□□ 1.52
BRCA1-228ENST00000618469 PZPP20742 1482 aa24.56■■□□□ 1.52
BRCA1-228ENST00000618469 PHF23Q9BUL5 403 aaPredicted RBP24.55■■□□□ 1.52
BRCA1-228ENST00000618469 ANKLE2Q86XL3 938 aa24.54■■□□□ 1.52
BRCA1-228ENST00000618469 VWDEQ8N2E2 1590 aa24.53■■□□□ 1.52
BRCA1-228ENST00000618469 ALKQ9UM73 1620 aa24.51■■□□□ 1.51
BRCA1-228ENST00000618469 STRCP1A6NGW2 1772 aa24.48■■□□□ 1.51
BRCA1-228ENST00000618469 NPHP4O75161 1426 aaPredicted RBP24.48■■□□□ 1.51
BRCA1-228ENST00000618469 THEMISQ8N1K5 641 aaPredicted RBP24.48■■□□□ 1.51
BRCA1-228ENST00000618469 RRBP1Q9P2E9 1410 aaKnown RBP24.48■■□□□ 1.51
BRCA1-228ENST00000618469 UGGT1Q9NYU2 1555 aa24.47■■□□□ 1.51
BRCA1-228ENST00000618469 ANKRD50Q9ULJ7 1429 aa24.46■■□□□ 1.51
BRCA1-228ENST00000618469 ITGAEP38570 1179 aa24.45■■□□□ 1.5
BRCA1-228ENST00000618469 CFAP65Q6ZU64 1925 aaKnown RBP24.45■■□□□ 1.5
BRCA1-228ENST00000618469 ROCK1Q13464 1354 aa24.43■■□□□ 1.5
BRCA1-228ENST00000618469 KANK1Q14678 1352 aa24.43■■□□□ 1.5
BRCA1-228ENST00000618469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.43■■□□□ 1.5
BRCA1-228ENST00000618469 IQGAP1P46940 1657 aa24.43■■□□□ 1.5
BRCA1-228ENST00000618469 ERVK-7P63135 1459 aa24.42■■□□□ 1.5
BRCA1-228ENST00000618469 UNC13BO14795 1591 aa24.4■■□□□ 1.5
BRCA1-228ENST00000618469 MED14O60244 1454 aa24.39■■□□□ 1.5
BRCA1-228ENST00000618469 NLRP1Q9C000 1473 aa24.39■■□□□ 1.5
BRCA1-228ENST00000618469 LMTK2Q8IWU2 1503 aa24.39■■□□□ 1.49
BRCA1-228ENST00000618469 LRRC7Q96NW7 1537 aa24.39■■□□□ 1.49
BRCA1-228ENST00000618469 EFCAB6Q5THR3 1501 aa24.37■■□□□ 1.49
BRCA1-228ENST00000618469 ARHGAP31Q2M1Z3 1444 aa24.36■■□□□ 1.49
BRCA1-228ENST00000618469 TET3O43151 1660 aa24.32■■□□□ 1.48
BRCA1-228ENST00000618469 GCC2Q8IWJ2 1684 aa24.32■■□□□ 1.48
BRCA1-228ENST00000618469 RGS17Q9UGC6 210 aaPredicted RBP24.31■■□□□ 1.48
BRCA1-228ENST00000618469 IQGAP3Q86VI3 1631 aa24.29■■□□□ 1.48
BRCA1-228ENST00000618469 UBR1Q8IWV7 1749 aa24.27■■□□□ 1.48
BRCA1-228ENST00000618469 SYNMO15061 1565 aa24.26■■□□□ 1.47
BRCA1-228ENST00000618469 LTKP29376 864 aa24.26■■□□□ 1.47
BRCA1-228ENST00000618469 XIRP1Q702N8 1843 aaKnown RBP24.26■■□□□ 1.47
BRCA1-228ENST00000618469 PIK3C2BO00750 1634 aa24.24■■□□□ 1.47
BRCA1-228ENST00000618469 TXNDC2Q86VQ3 553 aa24.23■■□□□ 1.47
BRCA1-228ENST00000618469 RPRD2Q5VT52 1461 aaKnown RBP24.23■■□□□ 1.47
BRCA1-228ENST00000618469 E9PCH4 1651 aa24.21■■□□□ 1.47
BRCA1-228ENST00000618469 SCAF11Q99590 1463 aaKnown RBP24.21■■□□□ 1.47
BRCA1-228ENST00000618469 NAIPQ13075 1403 aa24.21■■□□□ 1.47
BRCA1-228ENST00000618469 NOS1P29475 1434 aa24.2■■□□□ 1.46
BRCA1-228ENST00000618469 RBM33Q96EV2 1170 aaKnown RBP24.19■■□□□ 1.46
BRCA1-228ENST00000618469 HFM1A2PYH4 1435 aa24.18■■□□□ 1.46
BRCA1-228ENST00000618469 NUP155O75694 1391 aa24.17■■□□□ 1.46
BRCA1-228ENST00000618469 POTEAQ6S8J7 498 aa24.17■■□□□ 1.46
BRCA1-228ENST00000618469 KDM5AP29375 1690 aaKnown RBP24.16■■□□□ 1.46
BRCA1-228ENST00000618469 ADGRB3O60242 1522 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms