RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 EIF2AK4Q9P2K8 1649 aaKnown RBP17.98■□□□□ 0.47
LINC00539-204ENST00000608957 ZNF142P52746 1687 aaPredicted RBP17.97■□□□□ 0.47
LINC00539-204ENST00000608957 SHANK2Q9UPX8 1470 aa17.97■□□□□ 0.47
LINC00539-204ENST00000608957 KDM5DQ9BY66 1539 aa17.97■□□□□ 0.47
LINC00539-204ENST00000608957 DAPK1P53355 1430 aa17.97■□□□□ 0.47
LINC00539-204ENST00000608957 PPP6R1Q9UPN7 881 aa17.96■□□□□ 0.47
LINC00539-204ENST00000608957 FAM135AQ9P2D6 1515 aa17.95■□□□□ 0.46
LINC00539-204ENST00000608957 CEP152O94986 1710 aa17.95■□□□□ 0.46
LINC00539-204ENST00000608957 DUOX2Q9NRD8 1548 aa17.94■□□□□ 0.46
LINC00539-204ENST00000608957 CFAP65Q6ZU64 1925 aaKnown RBP17.92■□□□□ 0.46
LINC00539-204ENST00000608957 ZC3H13Q5T200 1668 aaKnown RBP17.92■□□□□ 0.46
LINC00539-204ENST00000608957 ABCC3O15438 1527 aa17.91■□□□□ 0.46
LINC00539-204ENST00000608957 CEP170BQ9Y4F5 1589 aaPredicted RBP17.91■□□□□ 0.46
LINC00539-204ENST00000608957 PZPP20742 1482 aa17.9■□□□□ 0.46
LINC00539-204ENST00000608957 CAMSAP1Q5T5Y3 1602 aa17.9■□□□□ 0.46
LINC00539-204ENST00000608957 KIF15Q9NS87 1388 aa17.9■□□□□ 0.46
LINC00539-204ENST00000608957 ILDR1Q86SU0 546 aaPredicted RBP17.89■□□□□ 0.45
LINC00539-204ENST00000608957 NCOA1Q15788 1441 aa17.89■□□□□ 0.45
LINC00539-204ENST00000608957 DEPDC5O75140 1603 aa17.88■□□□□ 0.45
LINC00539-204ENST00000608957 FBXO31Q5XUX0 539 aaPredicted RBP17.88■□□□□ 0.45
LINC00539-204ENST00000608957 RRP7BPQ9NSQ0 103 aa17.87■□□□□ 0.45
LINC00539-204ENST00000608957 WASHC2CQ9Y4E1 1318 aa17.87■□□□□ 0.45
LINC00539-204ENST00000608957 PRDM15P57071 1507 aaPredicted RBP17.87■□□□□ 0.45
LINC00539-204ENST00000608957 CHIC2Q9UKJ5 165 aa17.86■□□□□ 0.45
LINC00539-204ENST00000608957 ERBINQ96RT1 1412 aa17.86■□□□□ 0.45
LINC00539-204ENST00000608957 ADGRL2O95490 1459 aa17.86■□□□□ 0.45
LINC00539-204ENST00000608957 A2ML1A8K2U0 1454 aa17.84■□□□□ 0.45
LINC00539-204ENST00000608957 TNRQ92752 1358 aa17.83■□□□□ 0.45
LINC00539-204ENST00000608957 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
LINC00539-204ENST00000608957 PPARGC1BQ86YN6 1023 aaKnown RBP17.83■□□□□ 0.44
LINC00539-204ENST00000608957 SPATA31D1Q6ZQQ2 1576 aa17.83■□□□□ 0.44
LINC00539-204ENST00000608957 PTPRTO14522 1441 aa17.82■□□□□ 0.44
LINC00539-204ENST00000608957 ANKRD30AQ9BXX3 1397 aa17.81■□□□□ 0.44
LINC00539-204ENST00000608957 PLA2R1Q13018 1463 aa17.81■□□□□ 0.44
LINC00539-204ENST00000608957 VWDEQ8N2E2 1590 aa17.8■□□□□ 0.44
LINC00539-204ENST00000608957 POLR1AO95602 1720 aaPredicted RBP17.8■□□□□ 0.44
LINC00539-204ENST00000608957 ERVK-7P63135 1459 aa17.8■□□□□ 0.44
LINC00539-204ENST00000608957 NCKAP5LQ9HCH0 1330 aa17.79■□□□□ 0.44
LINC00539-204ENST00000608957 NEURL4Q96JN8 1562 aa17.76■□□□□ 0.43
LINC00539-204ENST00000608957 DMRT2Q9Y5R5 561 aa17.76■□□□□ 0.43
LINC00539-204ENST00000608957 LTBP4Q8N2S1 1624 aa17.76■□□□□ 0.43
LINC00539-204ENST00000608957 NLRP1Q9C000 1473 aa17.75■□□□□ 0.43
LINC00539-204ENST00000608957 LMTK2Q8IWU2 1503 aa17.75■□□□□ 0.43
LINC00539-204ENST00000608957 ARHGAP31Q2M1Z3 1444 aa17.74■□□□□ 0.43
LINC00539-204ENST00000608957 FBXO41Q8TF61 875 aa17.74■□□□□ 0.43
LINC00539-204ENST00000608957 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.43
LINC00539-204ENST00000608957 UBR1Q8IWV7 1749 aa17.74■□□□□ 0.43
LINC00539-204ENST00000608957 UGGT1Q9NYU2 1555 aa17.74■□□□□ 0.43
LINC00539-204ENST00000608957 CERKQ8TCT0 537 aa17.73■□□□□ 0.43
LINC00539-204ENST00000608957 ANKRD50Q9ULJ7 1429 aa17.72■□□□□ 0.43
LINC00539-204ENST00000608957 UNC13BO14795 1591 aa17.7■□□□□ 0.42
LINC00539-204ENST00000608957 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.7■□□□□ 0.42
LINC00539-204ENST00000608957 PKD2Q13563 968 aa17.7■□□□□ 0.42
LINC00539-204ENST00000608957 EFCAB6Q5THR3 1501 aa17.7■□□□□ 0.42
LINC00539-204ENST00000608957 SYNMO15061 1565 aa17.69■□□□□ 0.42
LINC00539-204ENST00000608957 PIK3C2BO00750 1634 aa17.69■□□□□ 0.42
LINC00539-204ENST00000608957 ROCK1Q13464 1354 aa17.68■□□□□ 0.42
LINC00539-204ENST00000608957 KANK1Q14678 1352 aa17.68■□□□□ 0.42
LINC00539-204ENST00000608957 RRBP1Q9P2E9 1410 aaKnown RBP17.68■□□□□ 0.42
LINC00539-204ENST00000608957 GCC2Q8IWJ2 1684 aa17.67■□□□□ 0.42
LINC00539-204ENST00000608957 TET3O43151 1660 aa17.67■□□□□ 0.42
LINC00539-204ENST00000608957 ZNF335Q9H4Z2 1342 aaPredicted RBP17.66■□□□□ 0.42
LINC00539-204ENST00000608957 ITGAEP38570 1179 aa17.64■□□□□ 0.41
LINC00539-204ENST00000608957 THEMISQ8N1K5 641 aaPredicted RBP17.64■□□□□ 0.41
LINC00539-204ENST00000608957 E9PCH4 1651 aa17.64■□□□□ 0.41
LINC00539-204ENST00000608957 IQGAP1P46940 1657 aa17.64■□□□□ 0.41
LINC00539-204ENST00000608957 NOS1P29475 1434 aa17.64■□□□□ 0.41
LINC00539-204ENST00000608957 MED14O60244 1454 aa17.63■□□□□ 0.41
LINC00539-204ENST00000608957 MYO5BQ9ULV0 1848 aa17.63■□□□□ 0.41
LINC00539-204ENST00000608957 IQGAP3Q86VI3 1631 aa17.63■□□□□ 0.41
LINC00539-204ENST00000608957 KDM5AP29375 1690 aaKnown RBP17.62■□□□□ 0.41
LINC00539-204ENST00000608957 ARHGAP23Q9P227 1491 aa17.62■□□□□ 0.41
LINC00539-204ENST00000608957 STRCP1A6NGW2 1772 aa17.61■□□□□ 0.41
LINC00539-204ENST00000608957 SLIT1O75093 1534 aa17.61■□□□□ 0.41
LINC00539-204ENST00000608957 ANKLE2Q86XL3 938 aa17.6■□□□□ 0.41
LINC00539-204ENST00000608957 NPHP4O75161 1426 aaPredicted RBP17.6■□□□□ 0.41
LINC00539-204ENST00000608957 IQSEC2Q5JU85 1478 aa17.58■□□□□ 0.41
LINC00539-204ENST00000608957 RPRD2Q5VT52 1461 aaKnown RBP17.58■□□□□ 0.41
LINC00539-204ENST00000608957 IDI1Q13907 227 aa17.57■□□□□ 0.4
LINC00539-204ENST00000608957 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
LINC00539-204ENST00000608957 LTKP29376 864 aa17.56■□□□□ 0.4
LINC00539-204ENST00000608957 SCAF11Q99590 1463 aaKnown RBP17.56■□□□□ 0.4
LINC00539-204ENST00000608957 TMEM131LA2VDJ0 1609 aa17.53■□□□□ 0.4
LINC00539-204ENST00000608957 NAIPQ13075 1403 aa17.53■□□□□ 0.4
LINC00539-204ENST00000608957 TMEM2Q9UHN6 1383 aa17.53■□□□□ 0.4
LINC00539-204ENST00000608957 NUP155O75694 1391 aa17.52■□□□□ 0.39
LINC00539-204ENST00000608957 CPS1P31327 1500 aa17.51■□□□□ 0.39
LINC00539-204ENST00000608957 SPHKAPQ2M3C7 1700 aa17.5■□□□□ 0.39
LINC00539-204ENST00000608957 TXNDC2Q86VQ3 553 aa17.49■□□□□ 0.39
LINC00539-204ENST00000608957 XIRP1Q702N8 1843 aaKnown RBP17.49■□□□□ 0.39
LINC00539-204ENST00000608957 SLC52A1Q9NWF4 448 aa17.48■□□□□ 0.39
LINC00539-204ENST00000608957 STAG3Q9UJ98 1225 aa17.47■□□□□ 0.39
LINC00539-204ENST00000608957 ALKQ9UM73 1620 aa17.46■□□□□ 0.39
LINC00539-204ENST00000608957 HFM1A2PYH4 1435 aa17.46■□□□□ 0.39
LINC00539-204ENST00000608957 ZFYVE9O95405 1425 aa17.46■□□□□ 0.39
LINC00539-204ENST00000608957 EID1Q9Y6B2 187 aa17.44■□□□□ 0.38
LINC00539-204ENST00000608957 LRRC7Q96NW7 1537 aa17.43■□□□□ 0.38
LINC00539-204ENST00000608957 RIMS2Q9UQ26 1411 aa17.41■□□□□ 0.38
LINC00539-204ENST00000608957 CLTCL1P53675 1640 aa17.41■□□□□ 0.38
LINC00539-204ENST00000608957 UBAP1LF5GYI3 381 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms