RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CEP162Q5TB80 1403 aa10.07□□□□□ -0.8
CUX1-220ENST00000607092 ZNF335Q9H4Z2 1342 aaPredicted RBP10.07□□□□□ -0.8
CUX1-220ENST00000607092 TOM1O60784 492 aa10.06□□□□□ -0.8
CUX1-220ENST00000607092 PPP4R3CPQ6ZMV5 832 aa10.06□□□□□ -0.8
CUX1-220ENST00000607092 THEMISQ8N1K5 641 aaPredicted RBP10.06□□□□□ -0.8
CUX1-220ENST00000607092 TSPY4P0CV99 314 aa10.05□□□□□ -0.8
CUX1-220ENST00000607092 TSPY10P0CW01 314 aa10.05□□□□□ -0.8
CUX1-220ENST00000607092 ILDR2Q71H61 639 aa10.05□□□□□ -0.8
CUX1-220ENST00000607092 CPS1P31327 1500 aa10.05□□□□□ -0.8
CUX1-220ENST00000607092 CCDC141Q6ZP82 1450 aa10.04□□□□□ -0.8
CUX1-220ENST00000607092 MBD5Q9P267 1494 aa10.04□□□□□ -0.8
CUX1-220ENST00000607092 TNRQ92752 1358 aa10.04□□□□□ -0.8
CUX1-220ENST00000607092 ANKLE2Q86XL3 938 aa10.04□□□□□ -0.8
CUX1-220ENST00000607092 WASHC2CQ9Y4E1 1318 aa10.04□□□□□ -0.8
CUX1-220ENST00000607092 KDM5DQ9BY66 1539 aa10.03□□□□□ -0.8
CUX1-220ENST00000607092 KIF3BO15066 747 aa10.03□□□□□ -0.8
CUX1-220ENST00000607092 TIAM1Q13009 1591 aa10.03□□□□□ -0.8
CUX1-220ENST00000607092 PZPP20742 1482 aa10.03□□□□□ -0.8
CUX1-220ENST00000607092 NLRP1Q9C000 1473 aa10.03□□□□□ -0.8
CUX1-220ENST00000607092 DNMT1P26358 1616 aaKnown RBP10.01□□□□□ -0.81
CUX1-220ENST00000607092 MIA2Q96PC5 1412 aa10□□□□□ -0.81
CUX1-220ENST00000607092 SHANK2Q9UPX8 1470 aa10□□□□□ -0.81
CUX1-220ENST00000607092 ZNF644Q9H582 1327 aaPredicted RBP10□□□□□ -0.81
CUX1-220ENST00000607092 CAMSAP2Q08AD1 1489 aa9.99□□□□□ -0.81
CUX1-220ENST00000607092 SCAF1Q9H7N4 1312 aaKnown RBP9.99□□□□□ -0.81
CUX1-220ENST00000607092 MED14O60244 1454 aa9.98□□□□□ -0.81
CUX1-220ENST00000607092 NCOA2Q15596 1464 aa9.98□□□□□ -0.81
CUX1-220ENST00000607092 ARHGEF5Q12774 1597 aa9.98□□□□□ -0.81
CUX1-220ENST00000607092 POLR1AO95602 1720 aaPredicted RBP9.98□□□□□ -0.81
CUX1-220ENST00000607092 UGGT1Q9NYU2 1555 aa9.97□□□□□ -0.81
CUX1-220ENST00000607092 FBXO31Q5XUX0 539 aaPredicted RBP9.97□□□□□ -0.81
CUX1-220ENST00000607092 NPHP4O75161 1426 aaPredicted RBP9.97□□□□□ -0.81
CUX1-220ENST00000607092 DEPDC5O75140 1603 aa9.96□□□□□ -0.81
CUX1-220ENST00000607092 PIP4K2BP78356 416 aa9.96□□□□□ -0.82
CUX1-220ENST00000607092 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.96□□□□□ -0.822e-6■■□□□ 13.4
CUX1-220ENST00000607092 ZC3H13Q5T200 1668 aaKnown RBP9.96□□□□□ -0.82
CUX1-220ENST00000607092 NEURL4Q96JN8 1562 aa9.95□□□□□ -0.82
CUX1-220ENST00000607092 HSPA1LP34931 641 aa9.94□□□□□ -0.82
CUX1-220ENST00000607092 EIF2AK4Q9P2K8 1649 aaKnown RBP9.93□□□□□ -0.82
CUX1-220ENST00000607092 RNF17Q9BXT8 1623 aaKnown RBP9.93□□□□□ -0.82
CUX1-220ENST00000607092 MAST1Q9Y2H9 1570 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 MYOM3Q5VTT5 1437 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 SLC4A1APQ9BWU0 796 aaKnown RBP9.92□□□□□ -0.82
CUX1-220ENST00000607092 EID1Q9Y6B2 187 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 SYNMO15061 1565 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 VWDEQ8N2E2 1590 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 ABCC3O15438 1527 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 MAP3K1Q13233 1512 aa9.92□□□□□ -0.82
CUX1-220ENST00000607092 LRRC9Q6ZRR7 1453 aa9.91□□□□□ -0.82
CUX1-220ENST00000607092 VPS8Q8N3P4 1428 aa9.91□□□□□ -0.82
CUX1-220ENST00000607092 ERVK-7P63135 1459 aa9.91□□□□□ -0.82
CUX1-220ENST00000607092 KANK1Q14678 1352 aa9.9□□□□□ -0.82
CUX1-220ENST00000607092 IQGAP1P46940 1657 aa9.9□□□□□ -0.82
CUX1-220ENST00000607092 MED1Q15648 1581 aaPredicted RBP9.9□□□□□ -0.82
CUX1-220ENST00000607092 DUOX2Q9NRD8 1548 aa9.9□□□□□ -0.82
CUX1-220ENST00000607092 ARHGAP31Q2M1Z3 1444 aa9.9□□□□□ -0.83
CUX1-220ENST00000607092 APLP2Q06481 763 aa9.89□□□□□ -0.83
CUX1-220ENST00000607092 NCBP3Q53F19 620 aaKnown RBP9.89□□□□□ -0.83
CUX1-220ENST00000607092 SCAF11Q99590 1463 aaKnown RBP9.89□□□□□ -0.83
CUX1-220ENST00000607092 ERBINQ96RT1 1412 aa9.88□□□□□ -0.83
CUX1-220ENST00000607092 LRRC7Q96NW7 1537 aa9.87□□□□□ -0.83
CUX1-220ENST00000607092 STAG3Q9UJ98 1225 aa9.87□□□□□ -0.83
CUX1-220ENST00000607092 KIF15Q9NS87 1388 aa9.87□□□□□ -0.83
CUX1-220ENST00000607092 TXNDC2Q86VQ3 553 aa9.86□□□□□ -0.83
CUX1-220ENST00000607092 SLIT1O75093 1534 aa9.86□□□□□ -0.83
CUX1-220ENST00000607092 ARHGAP23Q9P227 1491 aa9.85□□□□□ -0.83
CUX1-220ENST00000607092 PRDM15P57071 1507 aaPredicted RBP9.85□□□□□ -0.83
CUX1-220ENST00000607092 UBR1Q8IWV7 1749 aa9.83□□□□□ -0.84
CUX1-220ENST00000607092 HDGFP51858 240 aaKnown RBP9.83□□□□□ -0.84
CUX1-220ENST00000607092 ANKRD30AQ9BXX3 1397 aa9.83□□□□□ -0.84
CUX1-220ENST00000607092 TMEM2Q9UHN6 1383 aa9.83□□□□□ -0.84
CUX1-220ENST00000607092 KDM5AP29375 1690 aaKnown RBP9.83□□□□□ -0.84
CUX1-220ENST00000607092 FAM135BQ49AJ0 1406 aa9.82□□□□□ -0.84
CUX1-220ENST00000607092 MROH1Q8NDA8 1641 aa9.82□□□□□ -0.84
CUX1-220ENST00000607092 SLC52A1Q9NWF4 448 aa9.82□□□□□ -0.84
CUX1-220ENST00000607092 KCNA6P17658 529 aa9.81□□□□□ -0.84
CUX1-220ENST00000607092 LTKP29376 864 aa9.81□□□□□ -0.84
CUX1-220ENST00000607092 ALKQ9UM73 1620 aa9.81□□□□□ -0.84
CUX1-220ENST00000607092 EFCAB6Q5THR3 1501 aa9.81□□□□□ -0.84
CUX1-220ENST00000607092 LMTK2Q8IWU2 1503 aa9.81□□□□□ -0.84
CUX1-220ENST00000607092 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.8□□□□□ -0.845e-7■■□□□ 12.8
CUX1-220ENST00000607092 RRP7BPQ9NSQ0 103 aa9.8□□□□□ -0.84
CUX1-220ENST00000607092 ABCC5O15440 1437 aa9.8□□□□□ -0.84
CUX1-220ENST00000607092 CEP152O94986 1710 aa9.79□□□□□ -0.84
CUX1-220ENST00000607092 KANK4Q5T7N3 995 aaPredicted RBP9.79□□□□□ -0.84
CUX1-220ENST00000607092 DAPK1P53355 1430 aa9.79□□□□□ -0.84
CUX1-220ENST00000607092 NKTRP30414 1462 aaKnown RBP9.79□□□□□ -0.84
CUX1-220ENST00000607092 TMEM94Q12767 1356 aa9.78□□□□□ -0.84
CUX1-220ENST00000607092 NPM3O75607 178 aaKnown RBP9.78□□□□□ -0.84
CUX1-220ENST00000607092 PROSER2Q86WR7 435 aaPredicted RBP9.78□□□□□ -0.84
CUX1-220ENST00000607092 FGD6Q6ZV73 1430 aa9.78□□□□□ -0.84
CUX1-220ENST00000607092 RPRD2Q5VT52 1461 aaKnown RBP9.78□□□□□ -0.84
CUX1-220ENST00000607092 PTPN23Q9H3S7 1636 aa9.78□□□□□ -0.84
CUX1-220ENST00000607092 MSH6P52701 1360 aa9.77□□□□□ -0.84
CUX1-220ENST00000607092 IDI1Q13907 227 aa9.77□□□□□ -0.85
CUX1-220ENST00000607092 BCANQ96GW7 911 aa9.77□□□□□ -0.85
CUX1-220ENST00000607092 STRCP1A6NGW2 1772 aa9.77□□□□□ -0.85
CUX1-220ENST00000607092 CROCC2H7BZ55 1655 aa9.77□□□□□ -0.85
CUX1-220ENST00000607092 PIK3C2BO00750 1634 aa9.76□□□□□ -0.85
CUX1-220ENST00000607092 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms