RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 CAMSAP1Q5T5Y3 1602 aa11.99□□□□□ -0.49
CUX1-219ENST00000606749 MYOM3Q5VTT5 1437 aa11.98□□□□□ -0.49
CUX1-219ENST00000606749 CEP170BQ9Y4F5 1589 aaPredicted RBP11.95□□□□□ -0.5
CUX1-219ENST00000606749 PLA2R1Q13018 1463 aa11.95□□□□□ -0.5
CUX1-219ENST00000606749 TNRQ92752 1358 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 LTBP4Q8N2S1 1624 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 MYO3AQ8NEV4 1616 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 KDM5DQ9BY66 1539 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 A2ML1A8K2U0 1454 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 PZPP20742 1482 aa11.94□□□□□ -0.5
CUX1-219ENST00000606749 ZNF142P52746 1687 aaPredicted RBP11.94□□□□□ -0.5
CUX1-219ENST00000606749 MAST1Q9Y2H9 1570 aa11.93□□□□□ -0.5
CUX1-219ENST00000606749 ZNF335Q9H4Z2 1342 aaPredicted RBP11.93□□□□□ -0.5
CUX1-219ENST00000606749 FAM135AQ9P2D6 1515 aa11.93□□□□□ -0.5
CUX1-219ENST00000606749 TCOF1Q13428 1488 aaKnown RBP11.93□□□□□ -0.5
CUX1-219ENST00000606749 RRP7BPQ9NSQ0 103 aa11.92□□□□□ -0.5
CUX1-219ENST00000606749 DNMT1P26358 1616 aaKnown RBP11.92□□□□□ -0.5
CUX1-219ENST00000606749 THEMISQ8N1K5 641 aaPredicted RBP11.91□□□□□ -0.5
CUX1-219ENST00000606749 ABCC5O15440 1437 aa11.91□□□□□ -0.5
CUX1-219ENST00000606749 ANKLE2Q86XL3 938 aa11.9□□□□□ -0.5
CUX1-219ENST00000606749 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.89□□□□□ -0.51
CUX1-219ENST00000606749 ABCC3O15438 1527 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 DUOX2Q9NRD8 1548 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 RNF17Q9BXT8 1623 aaKnown RBP11.88□□□□□ -0.51
CUX1-219ENST00000606749 PTPN23Q9H3S7 1636 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 KIF15Q9NS87 1388 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 IQSEC2Q5JU85 1478 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 NLRP1Q9C000 1473 aa11.88□□□□□ -0.51
CUX1-219ENST00000606749 FGD6Q6ZV73 1430 aa11.87□□□□□ -0.51
CUX1-219ENST00000606749 CHIC2Q9UKJ5 165 aa11.87□□□□□ -0.51
CUX1-219ENST00000606749 DAPK1P53355 1430 aa11.86□□□□□ -0.51
CUX1-219ENST00000606749 EIF2AK4Q9P2K8 1649 aaKnown RBP11.86□□□□□ -0.51
CUX1-219ENST00000606749 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.513e-6■■□□□ 13.2
CUX1-219ENST00000606749 SHANK2Q9UPX8 1470 aa11.86□□□□□ -0.51
CUX1-219ENST00000606749 UGGT1Q9NYU2 1555 aa11.85□□□□□ -0.51
CUX1-219ENST00000606749 UBAP1LF5GYI3 381 aa11.85□□□□□ -0.51
CUX1-219ENST00000606749 MROH1Q8NDA8 1641 aa11.85□□□□□ -0.51
CUX1-219ENST00000606749 ERBINQ96RT1 1412 aa11.84□□□□□ -0.51
CUX1-219ENST00000606749 SPATA31D1Q6ZQQ2 1576 aa11.84□□□□□ -0.51
CUX1-219ENST00000606749 ERVK-7P63135 1459 aa11.83□□□□□ -0.52
CUX1-219ENST00000606749 ANKRD30AQ9BXX3 1397 aa11.83□□□□□ -0.52
CUX1-219ENST00000606749 ZC3H13Q5T200 1668 aaKnown RBP11.83□□□□□ -0.52
CUX1-219ENST00000606749 NEURL4Q96JN8 1562 aa11.83□□□□□ -0.52
CUX1-219ENST00000606749 FAM50AQ14320 339 aaKnown RBP11.82□□□□□ -0.52
CUX1-219ENST00000606749 NPHP4O75161 1426 aaPredicted RBP11.82□□□□□ -0.52
CUX1-219ENST00000606749 ARHGAP31Q2M1Z3 1444 aa11.82□□□□□ -0.52
CUX1-219ENST00000606749 MED14O60244 1454 aa11.82□□□□□ -0.52
CUX1-219ENST00000606749 CFAP65Q6ZU64 1925 aaKnown RBP11.82□□□□□ -0.52
CUX1-219ENST00000606749 CROCC2H7BZ55 1655 aa11.81□□□□□ -0.52
CUX1-219ENST00000606749 CEP152O94986 1710 aa11.81□□□□□ -0.52
CUX1-219ENST00000606749 KANK1Q14678 1352 aa11.8□□□□□ -0.52
CUX1-219ENST00000606749 POLR1AO95602 1720 aaPredicted RBP11.8□□□□□ -0.52
CUX1-219ENST00000606749 PRDM15P57071 1507 aaPredicted RBP11.8□□□□□ -0.52
CUX1-219ENST00000606749 DEPDC5O75140 1603 aa11.79□□□□□ -0.52
CUX1-219ENST00000606749 LTKP29376 864 aa11.79□□□□□ -0.52
CUX1-219ENST00000606749 TXNDC2Q86VQ3 553 aa11.79□□□□□ -0.52
CUX1-219ENST00000606749 CPS1P31327 1500 aa11.78□□□□□ -0.52
CUX1-219ENST00000606749 TOM1O60784 492 aa11.78□□□□□ -0.52
CUX1-219ENST00000606749 IDI1Q13907 227 aa11.78□□□□□ -0.52
CUX1-219ENST00000606749 DISP3Q9P2K9 1392 aa11.78□□□□□ -0.52
CUX1-219ENST00000606749 VWDEQ8N2E2 1590 aa11.77□□□□□ -0.53
CUX1-219ENST00000606749 ADGRL2O95490 1459 aa11.76□□□□□ -0.53
CUX1-219ENST00000606749 PIP4K2BP78356 416 aa11.76□□□□□ -0.53
CUX1-219ENST00000606749 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
CUX1-219ENST00000606749 EID1Q9Y6B2 187 aa11.76□□□□□ -0.53
CUX1-219ENST00000606749 UBR1Q8IWV7 1749 aa11.75□□□□□ -0.53
CUX1-219ENST00000606749 ANKRD50Q9ULJ7 1429 aa11.75□□□□□ -0.53
CUX1-219ENST00000606749 SCAF11Q99590 1463 aaKnown RBP11.75□□□□□ -0.53
CUX1-219ENST00000606749 ARHGAP23Q9P227 1491 aa11.75□□□□□ -0.53
CUX1-219ENST00000606749 LMTK2Q8IWU2 1503 aa11.75□□□□□ -0.53
CUX1-219ENST00000606749 IQGAP1P46940 1657 aa11.75□□□□□ -0.53
CUX1-219ENST00000606749 ILDR2Q71H61 639 aa11.74□□□□□ -0.53
CUX1-219ENST00000606749 SCAF1Q9H7N4 1312 aaKnown RBP11.74□□□□□ -0.53
CUX1-219ENST00000606749 SLIT1O75093 1534 aa11.74□□□□□ -0.53
CUX1-219ENST00000606749 SLC52A1Q9NWF4 448 aa11.73□□□□□ -0.53
CUX1-219ENST00000606749 TMEM2Q9UHN6 1383 aa11.73□□□□□ -0.53
CUX1-219ENST00000606749 NOS1P29475 1434 aa11.72□□□□□ -0.53
CUX1-219ENST00000606749 HSPA1LP34931 641 aa11.72□□□□□ -0.53
CUX1-219ENST00000606749 PPARGC1BQ86YN6 1023 aaKnown RBP11.72□□□□□ -0.53
CUX1-219ENST00000606749 PIK3C2BO00750 1634 aa11.71□□□□□ -0.54
CUX1-219ENST00000606749 LRRC7Q96NW7 1537 aa11.7□□□□□ -0.54
CUX1-219ENST00000606749 STRCP1A6NGW2 1772 aa11.7□□□□□ -0.54
CUX1-219ENST00000606749 ROCK1Q13464 1354 aa11.69□□□□□ -0.54
CUX1-219ENST00000606749 SYNMO15061 1565 aa11.69□□□□□ -0.54
CUX1-219ENST00000606749 EFCAB6Q5THR3 1501 aa11.69□□□□□ -0.54
CUX1-219ENST00000606749 ITGAEP38570 1179 aa11.68□□□□□ -0.54
CUX1-219ENST00000606749 SLC26A8Q96RN1 970 aa11.68□□□□□ -0.54
CUX1-219ENST00000606749 RPRD2Q5VT52 1461 aaKnown RBP11.68□□□□□ -0.54
CUX1-219ENST00000606749 KCNA6P17658 529 aa11.67□□□□□ -0.54
CUX1-219ENST00000606749 KDM5AP29375 1690 aaKnown RBP11.67□□□□□ -0.54
CUX1-219ENST00000606749 ALKQ9UM73 1620 aa11.67□□□□□ -0.54
CUX1-219ENST00000606749 SOCS7O14512 581 aa11.65□□□□□ -0.54
CUX1-219ENST00000606749 HDGFP51858 240 aaKnown RBP11.65□□□□□ -0.54
CUX1-219ENST00000606749 TET3O43151 1660 aa11.65□□□□□ -0.55
CUX1-219ENST00000606749 BCANQ96GW7 911 aa11.64□□□□□ -0.55
CUX1-219ENST00000606749 NUP155O75694 1391 aa11.64□□□□□ -0.55
CUX1-219ENST00000606749 CHGAP10645 457 aaKnown RBP11.63□□□□□ -0.55
CUX1-219ENST00000606749 PROSER2Q86WR7 435 aaPredicted RBP11.63□□□□□ -0.55
CUX1-219ENST00000606749 SENP3Q9H4L4 574 aaPredicted RBP11.63□□□□□ -0.55
CUX1-219ENST00000606749 ADGRB3O60242 1522 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms