RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 XIRP1Q702N8 1843 aaKnown RBP8.28□□□□□ -1.08
VRK3-226ENST00000602029 NPATQ14207 1427 aa8.28□□□□□ -1.08
VRK3-226ENST00000602029 CDC42BPAQ5VT25 1732 aa8.27□□□□□ -1.09
VRK3-226ENST00000602029 DNMT1P26358 1616 aaKnown RBP8.27□□□□□ -1.09
VRK3-226ENST00000602029 GPATCH8Q9UKJ3 1502 aaKnown RBP8.27□□□□□ -1.09
VRK3-226ENST00000602029 KIF3BO15066 747 aa8.26□□□□□ -1.09
VRK3-226ENST00000602029 ZNF644Q9H582 1327 aaPredicted RBP8.26□□□□□ -1.09
VRK3-226ENST00000602029 WASHC2CQ9Y4E1 1318 aa8.25□□□□□ -1.09
VRK3-226ENST00000602029 PTPRKQ15262 1439 aa8.24□□□□□ -1.09
VRK3-226ENST00000602029 KIAA1107Q9UPP5 1409 aa8.24□□□□□ -1.09
VRK3-226ENST00000602029 RNF17Q9BXT8 1623 aaKnown RBP8.24□□□□□ -1.09
VRK3-226ENST00000602029 TNRQ92752 1358 aa8.22□□□□□ -1.09
VRK3-226ENST00000602029 TSPY4P0CV99 314 aa8.22□□□□□ -1.09
VRK3-226ENST00000602029 TSPY10P0CW01 314 aa8.22□□□□□ -1.09
VRK3-226ENST00000602029 FBXO31Q5XUX0 539 aaPredicted RBP8.22□□□□□ -1.09
VRK3-226ENST00000602029 ANKLE2Q86XL3 938 aa8.22□□□□□ -1.09
VRK3-226ENST00000602029 UPF1Q92900 1129 aaKnown RBP eCLIP8.22□□□□□ -1.09
VRK3-226ENST00000602029 LRRC7Q96NW7 1537 aa8.22□□□□□ -1.09
VRK3-226ENST00000602029 INO80Q9ULG1 1556 aaPredicted RBP8.22□□□□□ -1.09
VRK3-226ENST00000602029 EHBP1L1Q8N3D4 1523 aa8.21□□□□□ -1.1
VRK3-226ENST00000602029 A2ML1A8K2U0 1454 aa8.2□□□□□ -1.1
VRK3-226ENST00000602029 THEMISQ8N1K5 641 aaPredicted RBP8.2□□□□□ -1.1
VRK3-226ENST00000602029 ADGBQ8N7X0 1667 aa8.2□□□□□ -1.1
VRK3-226ENST00000602029 DHX29Q7Z478 1369 aaKnown RBP8.2□□□□□ -1.1
VRK3-226ENST00000602029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.2□□□□□ -1.1
VRK3-226ENST00000602029 CCDC141Q6ZP82 1450 aa8.19□□□□□ -1.1
VRK3-226ENST00000602029 PLXNC1O60486 1568 aa8.19□□□□□ -1.1
VRK3-226ENST00000602029 TIAM1Q13009 1591 aa8.19□□□□□ -1.1
VRK3-226ENST00000602029 FAM135AQ9P2D6 1515 aa8.19□□□□□ -1.1
VRK3-226ENST00000602029 IQGAP1P46940 1657 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 STAG3Q9UJ98 1225 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 CEP162Q5TB80 1403 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 CAMSAP2Q08AD1 1489 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 KDM5DQ9BY66 1539 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 SYNMO15061 1565 aa8.18□□□□□ -1.1
VRK3-226ENST00000602029 RSPH4AQ5TD94 716 aa8.17□□□□□ -1.1
VRK3-226ENST00000602029 RTEL1-TNFRSF6BF6WH68 1400 aa8.17□□□□□ -1.1
VRK3-226ENST00000602029 NCOA2Q15596 1464 aa8.17□□□□□ -1.1
VRK3-226ENST00000602029 ZC3H13Q5T200 1668 aaKnown RBP8.17□□□□□ -1.1
VRK3-226ENST00000602029 DEPDC5O75140 1603 aa8.16□□□□□ -1.1
VRK3-226ENST00000602029 NPHP4O75161 1426 aaPredicted RBP8.16□□□□□ -1.1
VRK3-226ENST00000602029 PZPP20742 1482 aa8.16□□□□□ -1.1
VRK3-226ENST00000602029 APLP2Q06481 763 aa8.16□□□□□ -1.1
VRK3-226ENST00000602029 BCANQ96GW7 911 aa8.16□□□□□ -1.1
VRK3-226ENST00000602029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.16□□□□□ -1.1
VRK3-226ENST00000602029 ROBO1Q9Y6N7 1651 aa8.15□□□□□ -1.1
VRK3-226ENST00000602029 UGGT1Q9NYU2 1555 aa8.15□□□□□ -1.1
VRK3-226ENST00000602029 MBD5Q9P267 1494 aa8.15□□□□□ -1.1
VRK3-226ENST00000602029 MIA2Q96PC5 1412 aa8.15□□□□□ -1.1
VRK3-226ENST00000602029 FOXD1Q16676 465 aa8.15□□□□□ -1.1
VRK3-226ENST00000602029 MED14O60244 1454 aa8.14□□□□□ -1.11
VRK3-226ENST00000602029 EID1Q9Y6B2 187 aa8.14□□□□□ -1.11
VRK3-226ENST00000602029 NLRP1Q9C000 1473 aa8.13□□□□□ -1.11
VRK3-226ENST00000602029 CFAP65Q6ZU64 1925 aaKnown RBP8.12□□□□□ -1.11
VRK3-226ENST00000602029 TXNDC2Q86VQ3 553 aa8.12□□□□□ -1.11
VRK3-226ENST00000602029 TRIM52Q96A61 297 aa8.12□□□□□ -1.11
VRK3-226ENST00000602029 PHLPP1O60346 1717 aa8.12□□□□□ -1.11
VRK3-226ENST00000602029 LRP6O75581 1613 aa8.11□□□□□ -1.11
VRK3-226ENST00000602029 SETBP1Q9Y6X0 1596 aa8.11□□□□□ -1.11
VRK3-226ENST00000602029 RRP7BPQ9NSQ0 103 aa8.11□□□□□ -1.11
VRK3-226ENST00000602029 KANK1Q14678 1352 aa8.1□□□□□ -1.11
VRK3-226ENST00000602029 FAM135BQ49AJ0 1406 aa8.1□□□□□ -1.11
VRK3-226ENST00000602029 LOC105371045A0A1W2PR82 267 aa8.09□□□□□ -1.11
VRK3-226ENST00000602029 ARHGEF5Q12774 1597 aa8.09□□□□□ -1.11
VRK3-226ENST00000602029 ABCC3O15438 1527 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 ERVK-7P63135 1459 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 LRRC9Q6ZRR7 1453 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 SCAF11Q99590 1463 aaKnown RBP8.08□□□□□ -1.12
VRK3-226ENST00000602029 CHIC2Q9UKJ5 165 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 VPS8Q8N3P4 1428 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 KIF15Q9NS87 1388 aa8.08□□□□□ -1.12
VRK3-226ENST00000602029 COL16A1Q07092 1604 aaPredicted RBP8.07□□□□□ -1.12
VRK3-226ENST00000602029 MYOM3Q5VTT5 1437 aa8.07□□□□□ -1.12
VRK3-226ENST00000602029 PPP1R15AO75807 674 aaPredicted RBP8.07□□□□□ -1.12
VRK3-226ENST00000602029 KANK4Q5T7N3 995 aaPredicted RBP8.07□□□□□ -1.12
VRK3-226ENST00000602029 C14orf37Q86TY3 774 aa8.07□□□□□ -1.12
VRK3-226ENST00000602029 PROSER2Q86WR7 435 aaPredicted RBP8.07□□□□□ -1.12
VRK3-226ENST00000602029 RBM33Q96EV2 1170 aaKnown RBP8.06□□□□□ -1.12
VRK3-226ENST00000602029 MAP3K1Q13233 1512 aa8.06□□□□□ -1.12
VRK3-226ENST00000602029 DUOX2Q9NRD8 1548 aa8.06□□□□□ -1.12
VRK3-226ENST00000602029 UBR1Q8IWV7 1749 aa8.06□□□□□ -1.12
VRK3-226ENST00000602029 CHGAP10645 457 aaKnown RBP8.05□□□□□ -1.12
VRK3-226ENST00000602029 LTKP29376 864 aa8.05□□□□□ -1.12
VRK3-226ENST00000602029 FAM50AQ14320 339 aaKnown RBP8.05□□□□□ -1.12
VRK3-226ENST00000602029 SLC26A8Q96RN1 970 aa8.05□□□□□ -1.12
VRK3-226ENST00000602029 EIF2AK4Q9P2K8 1649 aaKnown RBP8.04□□□□□ -1.12
VRK3-226ENST00000602029 CEP152O94986 1710 aa8.04□□□□□ -1.12
VRK3-226ENST00000602029 MEX3CQ5U5Q3 659 aaKnown RBP8.04□□□□□ -1.12
VRK3-226ENST00000602029 EP400Q96L91 3159 aa8.04□□□□□ -1.12
VRK3-226ENST00000602029 MAST1Q9Y2H9 1570 aa8.03□□□□□ -1.12
VRK3-226ENST00000602029 ANKRD30AQ9BXX3 1397 aa8.03□□□□□ -1.12
VRK3-226ENST00000602029 RGS12O14924 1447 aa8.03□□□□□ -1.12
VRK3-226ENST00000602029 SHPRHQ149N8 1683 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 MSH6P52701 1360 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 TMEM94Q12767 1356 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 JCADQ9P266 1359 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 TMEM2Q9UHN6 1383 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 ERBINQ96RT1 1412 aa8.02□□□□□ -1.13
VRK3-226ENST00000602029 CDK12Q9NYV4 1490 aaPredicted RBP8.01□□□□□ -1.13
VRK3-226ENST00000602029 EFCAB6Q5THR3 1501 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms