RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 CASKIN1Q8WXD9 1431 aa29.24■■■□□ 2.27
SSBP4-207ENST00000600244 EHMT2Q96KQ7 1210 aa29.24■■■□□ 2.27
SSBP4-207ENST00000600244 SENP3Q9H4L4 574 aaPredicted RBP29.24■■■□□ 2.27
SSBP4-207ENST00000600244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.24■■■□□ 2.27
SSBP4-207ENST00000600244 NPHP4O75161 1426 aaPredicted RBP29.21■■■□□ 2.27
SSBP4-207ENST00000600244 THEMISQ8N1K5 641 aaPredicted RBP29.21■■■□□ 2.27
SSBP4-207ENST00000600244 PLEKHH2Q8IVE3 1493 aa29.21■■■□□ 2.27
SSBP4-207ENST00000600244 LRRC7Q96NW7 1537 aa29.2■■■□□ 2.26
SSBP4-207ENST00000600244 DEPDC5O75140 1603 aa29.16■■■□□ 2.26
SSBP4-207ENST00000600244 ADGBQ8N7X0 1667 aa29.16■■■□□ 2.26
SSBP4-207ENST00000600244 PZPP20742 1482 aa29.16■■■□□ 2.26
SSBP4-207ENST00000600244 CFDP1Q9UEE9 299 aaPredicted RBP29.15■■■□□ 2.26
SSBP4-207ENST00000600244 STRCP1A6NGW2 1772 aa29.14■■■□□ 2.26
SSBP4-207ENST00000600244 POTEAQ6S8J7 498 aa29.13■■■□□ 2.25
SSBP4-207ENST00000600244 RNF17Q9BXT8 1623 aaKnown RBP29.12■■■□□ 2.25
SSBP4-207ENST00000600244 MIA2Q96PC5 1412 aa29.11■■■□□ 2.25
SSBP4-207ENST00000600244 DHX29Q7Z478 1369 aaKnown RBP29.11■■■□□ 2.25
SSBP4-207ENST00000600244 NLRP1Q9C000 1473 aa29.1■■■□□ 2.25
SSBP4-207ENST00000600244 UGGT1Q9NYU2 1555 aa29.09■■■□□ 2.25
SSBP4-207ENST00000600244 IQGAP1P46940 1657 aa29.07■■■□□ 2.24
SSBP4-207ENST00000600244 FAM135AQ9P2D6 1515 aa29.07■■■□□ 2.24
SSBP4-207ENST00000600244 RTEL1-TNFRSF6BF6WH68 1400 aa29.06■■■□□ 2.24
SSBP4-207ENST00000600244 SYNMO15061 1565 aa29.05■■■□□ 2.24
SSBP4-207ENST00000600244 KIF3BO15066 747 aa29.04■■■□□ 2.24
SSBP4-207ENST00000600244 KDM5DQ9BY66 1539 aa29.04■■■□□ 2.24
SSBP4-207ENST00000600244 MBD5Q9P267 1494 aa29.04■■■□□ 2.24
SSBP4-207ENST00000600244 CCNB3Q8WWL7 1395 aa29.03■■■□□ 2.24
SSBP4-207ENST00000600244 ZNF644Q9H582 1327 aaPredicted RBP29.02■■■□□ 2.24
SSBP4-207ENST00000600244 WASHC2CQ9Y4E1 1318 aa29.01■■■□□ 2.23
SSBP4-207ENST00000600244 FYCO1Q9BQS8 1478 aa29.01■■■□□ 2.23
SSBP4-207ENST00000600244 FAM135BQ49AJ0 1406 aa28.95■■■□□ 2.23
SSBP4-207ENST00000600244 ZC3H13Q5T200 1668 aaKnown RBP28.92■■■□□ 2.22
SSBP4-207ENST00000600244 XIRP1Q702N8 1843 aaKnown RBP28.88■■■□□ 2.21
SSBP4-207ENST00000600244 SETD1AO15047 1707 aaKnown RBP28.83■■■□□ 2.21
SSBP4-207ENST00000600244 TIAM1Q13009 1591 aa28.83■■■□□ 2.21
SSBP4-207ENST00000600244 MTUS2Q5JR59 1369 aa28.82■■■□□ 2.2
SSBP4-207ENST00000600244 SCAF11Q99590 1463 aaKnown RBP28.81■■■□□ 2.2
SSBP4-207ENST00000600244 LTKP29376 864 aa28.81■■■□□ 2.2
SSBP4-207ENST00000600244 ERVK-7P63135 1459 aa28.78■■■□□ 2.2
SSBP4-207ENST00000600244 CCDC141Q6ZP82 1450 aa28.77■■■□□ 2.2
SSBP4-207ENST00000600244 RSPH4AQ5TD94 716 aa28.76■■■□□ 2.19
SSBP4-207ENST00000600244 TXNDC2Q86VQ3 553 aa28.76■■■□□ 2.19
SSBP4-207ENST00000600244 UPF1Q92900 1129 aaKnown RBP eCLIP28.76■■■□□ 2.19
SSBP4-207ENST00000600244 NCOA2Q15596 1464 aa28.76■■■□□ 2.19
SSBP4-207ENST00000600244 ARHGAP23Q9P227 1491 aa28.76■■■□□ 2.19
SSBP4-207ENST00000600244 UBR1Q8IWV7 1749 aa28.74■■■□□ 2.19
SSBP4-207ENST00000600244 ABCC3O15438 1527 aa28.74■■■□□ 2.19
SSBP4-207ENST00000600244 SLIT1O75093 1534 aa28.73■■■□□ 2.19
SSBP4-207ENST00000600244 TMEM94Q12767 1356 aa28.72■■■□□ 2.19
SSBP4-207ENST00000600244 ROBO1Q9Y6N7 1651 aa28.71■■■□□ 2.19
SSBP4-207ENST00000600244 CEP162Q5TB80 1403 aa28.68■■■□□ 2.18
SSBP4-207ENST00000600244 EID1Q9Y6B2 187 aa28.64■■■□□ 2.18
SSBP4-207ENST00000600244 CAMSAP2Q08AD1 1489 aa28.64■■■□□ 2.17
SSBP4-207ENST00000600244 MAP3K1Q13233 1512 aa28.64■■■□□ 2.17
SSBP4-207ENST00000600244 EHBP1L1Q8N3D4 1523 aa28.64■■■□□ 2.17
SSBP4-207ENST00000600244 JCADQ9P266 1359 aa28.63■■■□□ 2.17
SSBP4-207ENST00000600244 KCNA6P17658 529 aa28.63■■■□□ 2.17
SSBP4-207ENST00000600244 CHIC1Q5VXU3 224 aa28.63■■■□□ 2.17
SSBP4-207ENST00000600244 LRRC9Q6ZRR7 1453 aa28.62■■■□□ 2.17
SSBP4-207ENST00000600244 TSPY4P0CV99 314 aa28.61■■■□□ 2.17
SSBP4-207ENST00000600244 TSPY10P0CW01 314 aa28.61■■■□□ 2.17
SSBP4-207ENST00000600244 PROSER2Q86WR7 435 aaPredicted RBP28.6■■■□□ 2.17
SSBP4-207ENST00000600244 RBM33Q96EV2 1170 aaKnown RBP28.59■■■□□ 2.17
SSBP4-207ENST00000600244 CFAP65Q6ZU64 1925 aaKnown RBP28.59■■■□□ 2.17
SSBP4-207ENST00000600244 ARHGEF5Q12774 1597 aa28.58■■■□□ 2.17
SSBP4-207ENST00000600244 MROH1Q8NDA8 1641 aa28.58■■■□□ 2.17
SSBP4-207ENST00000600244 TMEM2Q9UHN6 1383 aa28.57■■■□□ 2.16
SSBP4-207ENST00000600244 SLAIN2Q9P270 581 aa28.55■■■□□ 2.16
SSBP4-207ENST00000600244 ZNF772Q68DY9 489 aaPredicted RBP28.54■■■□□ 2.16
SSBP4-207ENST00000600244 TRIM52Q96A61 297 aa28.54■■■□□ 2.16
SSBP4-207ENST00000600244 PHLPP1O60346 1717 aa28.54■■■□□ 2.16
SSBP4-207ENST00000600244 PRDM15P57071 1507 aaPredicted RBP28.53■■■□□ 2.16
SSBP4-207ENST00000600244 EIF2AK4Q9P2K8 1649 aaKnown RBP28.52■■■□□ 2.16
SSBP4-207ENST00000600244 ARHGAP31Q2M1Z3 1444 aa28.52■■■□□ 2.16
SSBP4-207ENST00000600244 LRP6O75581 1613 aa28.51■■■□□ 2.15
SSBP4-207ENST00000600244 CEP152O94986 1710 aa28.51■■■□□ 2.15
SSBP4-207ENST00000600244 TET3O43151 1660 aa28.51■■■□□ 2.15
SSBP4-207ENST00000600244 SPATA31A6Q5VVP1 1343 aa28.49■■■□□ 2.15
SSBP4-207ENST00000600244 SLC26A8Q96RN1 970 aa28.49■■■□□ 2.15
SSBP4-207ENST00000600244 MSH6P52701 1360 aa28.48■■■□□ 2.15
SSBP4-207ENST00000600244 COL16A1Q07092 1604 aaPredicted RBP28.47■■■□□ 2.15
SSBP4-207ENST00000600244 NKTRP30414 1462 aaKnown RBP28.46■■■□□ 2.15
SSBP4-207ENST00000600244 MAST1Q9Y2H9 1570 aa28.46■■■□□ 2.15
SSBP4-207ENST00000600244 PIK3C2BO00750 1634 aa28.46■■■□□ 2.15
SSBP4-207ENST00000600244 FGD6Q6ZV73 1430 aa28.44■■■□□ 2.14
SSBP4-207ENST00000600244 RXRBP28702 533 aa28.44■■■□□ 2.14
SSBP4-207ENST00000600244 NWD1Q149M9 1564 aa28.44■■■□□ 2.14
SSBP4-207ENST00000600244 MEX3CQ5U5Q3 659 aaKnown RBP28.42■■■□□ 2.14
SSBP4-207ENST00000600244 STAG3Q9UJ98 1225 aa28.41■■■□□ 2.14
SSBP4-207ENST00000600244 CDK12Q9NYV4 1490 aaPredicted RBP28.4■■■□□ 2.14
SSBP4-207ENST00000600244 SRCAPQ6ZRS2 3230 aa28.4■■■□□ 2.14
SSBP4-207ENST00000600244 EFCAB6Q5THR3 1501 aa28.39■■■□□ 2.14
SSBP4-207ENST00000600244 IDI1Q13907 227 aa28.39■■■□□ 2.14
SSBP4-207ENST00000600244 KDM5AP29375 1690 aaKnown RBP28.38■■■□□ 2.13
SSBP4-207ENST00000600244 DUOX2Q9NRD8 1548 aa28.33■■■□□ 2.13
SSBP4-207ENST00000600244 SHPRHQ149N8 1683 aa28.3■■■□□ 2.12
SSBP4-207ENST00000600244 AHDC1Q5TGY3 1603 aaPredicted RBP28.29■■■□□ 2.12
SSBP4-207ENST00000600244 NCOA3Q9Y6Q9 1424 aa28.27■■■□□ 2.12
SSBP4-207ENST00000600244 CHD2O14647 1828 aaKnown RBP28.25■■■□□ 2.11
SSBP4-207ENST00000600244 BCANQ96GW7 911 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms