RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 YEATS2Q9ULM3 1422 aa22.24■■□□□ 1.15
TRIM28-209ENST00000597423 EIF2AK4Q9P2K8 1649 aaKnown RBP22.22■■□□□ 1.15
TRIM28-209ENST00000597423 DIP2CQ9Y2E4 1556 aa22.21■■□□□ 1.15
TRIM28-209ENST00000597423 PKD2Q13563 968 aa22.21■■□□□ 1.15
TRIM28-209ENST00000597423 ABCA6Q8N139 1617 aa22.2■■□□□ 1.15
TRIM28-209ENST00000597423 GGT6Q6P531 493 aa22.2■■□□□ 1.14
TRIM28-209ENST00000597423 KDM5DQ9BY66 1539 aa22.2■■□□□ 1.14
TRIM28-209ENST00000597423 PPP6R1Q9UPN7 881 aa22.19■■□□□ 1.14
TRIM28-209ENST00000597423 UNC13BO14795 1591 aa22.18■■□□□ 1.14
TRIM28-209ENST00000597423 PZPP20742 1482 aa22.18■■□□□ 1.14
TRIM28-209ENST00000597423 REREQ9P2R6 1566 aa22.15■■□□□ 1.14
TRIM28-209ENST00000597423 FAM135AQ9P2D6 1515 aa22.15■■□□□ 1.14
TRIM28-209ENST00000597423 WASHC2CQ9Y4E1 1318 aa22.14■■□□□ 1.14
TRIM28-209ENST00000597423 TIMELESSQ9UNS1 1208 aa22.14■■□□□ 1.13
TRIM28-209ENST00000597423 AGLP35573 1532 aa22.13■■□□□ 1.13
TRIM28-209ENST00000597423 ARHGEF40Q8TER5 1519 aa22.12■■□□□ 1.13
TRIM28-209ENST00000597423 ARID4BQ4LE39 1312 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-209ENST00000597423 NEUROD1Q13562 356 aa22.11■■□□□ 1.13
TRIM28-209ENST00000597423 FOXD1Q16676 465 aa22.11■■□□□ 1.13
TRIM28-209ENST00000597423 DEPDC5O75140 1603 aa22.1■■□□□ 1.13
TRIM28-209ENST00000597423 BCORL1Q5H9F3 1711 aa22.1■■□□□ 1.13
TRIM28-209ENST00000597423 IQGAP3Q86VI3 1631 aa22.09■■□□□ 1.13
TRIM28-209ENST00000597423 ESF1Q9H501 851 aaKnown RBP22.09■■□□□ 1.13
TRIM28-209ENST00000597423 ANKRD30BQ9BXX2 1392 aa22.09■■□□□ 1.13
TRIM28-209ENST00000597423 PRDM15P57071 1507 aaPredicted RBP22.08■■□□□ 1.13
TRIM28-209ENST00000597423 SIN3AQ96ST3 1273 aa22.08■■□□□ 1.13
TRIM28-209ENST00000597423 RNF17Q9BXT8 1623 aaKnown RBP22.08■■□□□ 1.13
TRIM28-209ENST00000597423 VWDEQ8N2E2 1590 aa22.05■■□□□ 1.12
TRIM28-209ENST00000597423 LMTK2Q8IWU2 1503 aa22.04■■□□□ 1.12
TRIM28-209ENST00000597423 MLECQ14165 292 aa22.02■■□□□ 1.12
TRIM28-209ENST00000597423 MROH1Q8NDA8 1641 aa22.01■■□□□ 1.11
TRIM28-209ENST00000597423 TONSLQ96HA7 1378 aa21.99■■□□□ 1.11
TRIM28-209ENST00000597423 TET3O43151 1660 aa21.98■■□□□ 1.11
TRIM28-209ENST00000597423 RPRD2Q5VT52 1461 aaKnown RBP21.97■■□□□ 1.11
TRIM28-209ENST00000597423 ABCC3O15438 1527 aa21.97■■□□□ 1.11
TRIM28-209ENST00000597423 CCDC144AA2RUR9 1427 aa21.96■■□□□ 1.11
TRIM28-209ENST00000597423 ARHGAP31Q2M1Z3 1444 aa21.95■■□□□ 1.1
TRIM28-209ENST00000597423 PTPRTO14522 1441 aa21.93■■□□□ 1.1
TRIM28-209ENST00000597423 ZC3H13Q5T200 1668 aaKnown RBP21.93■■□□□ 1.1
TRIM28-209ENST00000597423 EFCAB6Q5THR3 1501 aa21.93■■□□□ 1.1
TRIM28-209ENST00000597423 CNTLNQ9NXG0 1405 aa21.92■■□□□ 1.1
TRIM28-209ENST00000597423 PLA2R1Q13018 1463 aa21.9■■□□□ 1.1
TRIM28-209ENST00000597423 NPATQ14207 1427 aa21.89■■□□□ 1.1
TRIM28-209ENST00000597423 E9PCH4 1651 aa21.88■■□□□ 1.09
TRIM28-209ENST00000597423 CEP152O94986 1710 aa21.87■■□□□ 1.09
TRIM28-209ENST00000597423 PPP1R15AO75807 674 aaPredicted RBP21.87■■□□□ 1.09
TRIM28-209ENST00000597423 SLC52A1Q9NWF4 448 aa21.87■■□□□ 1.09
TRIM28-209ENST00000597423 ZMYM3Q14202 1370 aa21.87■■□□□ 1.09
TRIM28-209ENST00000597423 L3MBTL2Q969R5 705 aa21.86■■□□□ 1.09
TRIM28-209ENST00000597423 TRPM2O94759 1503 aa21.85■■□□□ 1.09
TRIM28-209ENST00000597423 CAMSAP1Q5T5Y3 1602 aa21.84■■□□□ 1.09
TRIM28-209ENST00000597423 SIGLEC1Q9BZZ2 1709 aa21.83■■□□□ 1.09
TRIM28-209ENST00000597423 STAC3Q96MF2 364 aa21.83■■□□□ 1.09
TRIM28-209ENST00000597423 NOS1P29475 1434 aa21.82■■□□□ 1.08
TRIM28-209ENST00000597423 RGL3Q3MIN7 710 aa21.8■■□□□ 1.08
TRIM28-209ENST00000597423 FBXO31Q5XUX0 539 aaPredicted RBP21.79■■□□□ 1.08
TRIM28-209ENST00000597423 SPHKAPQ2M3C7 1700 aa21.79■■□□□ 1.08
TRIM28-209ENST00000597423 CLTCQ00610 1675 aaKnown RBP21.79■■□□□ 1.08
TRIM28-209ENST00000597423 CHGAP10645 457 aaKnown RBP21.77■■□□□ 1.08
TRIM28-209ENST00000597423 DCAF11Q8TEB1 546 aa21.77■■□□□ 1.08
TRIM28-209ENST00000597423 IDI1Q13907 227 aa21.75■■□□□ 1.07
TRIM28-209ENST00000597423 ERVK-7P63135 1459 aa21.75■■□□□ 1.07
TRIM28-209ENST00000597423 STAG3Q9UJ98 1225 aa21.74■■□□□ 1.07
TRIM28-209ENST00000597423 KDM2AQ9Y2K7 1162 aa21.73■■□□□ 1.07
TRIM28-209ENST00000597423 RPGRIP1LQ68CZ1 1315 aa21.73■■□□□ 1.07
TRIM28-209ENST00000597423 SPATA31E1Q6ZUB1 1445 aa21.72■■□□□ 1.07
TRIM28-209ENST00000597423 ZNF326Q5BKZ1 582 aaKnown RBP21.72■■□□□ 1.07
TRIM28-209ENST00000597423 MROH2AA6NES4 1674 aa21.71■■□□□ 1.07
TRIM28-209ENST00000597423 NEURL4Q96JN8 1562 aa21.7■■□□□ 1.06
TRIM28-209ENST00000597423 CLTCL1P53675 1640 aa21.7■■□□□ 1.06
TRIM28-209ENST00000597423 TNRQ92752 1358 aa21.7■■□□□ 1.06
TRIM28-209ENST00000597423 SPATA31D1Q6ZQQ2 1576 aa21.69■■□□□ 1.06
TRIM28-209ENST00000597423 PREX1Q8TCU6 1659 aa21.69■■□□□ 1.06
TRIM28-209ENST00000597423 CEBPAP49715 358 aaPredicted RBP21.68■■□□□ 1.06
TRIM28-209ENST00000597423 CFAP65Q6ZU64 1925 aaKnown RBP21.67■■□□□ 1.06
TRIM28-209ENST00000597423 SYNMO15061 1565 aa21.65■■□□□ 1.06
TRIM28-209ENST00000597423 HDGFP51858 240 aaKnown RBP21.65■■□□□ 1.06
TRIM28-209ENST00000597423 FER1L4A9Z1Z3 1794 aa21.65■■□□□ 1.06
TRIM28-209ENST00000597423 UGGT1Q9NYU2 1555 aa21.65■■□□□ 1.06
TRIM28-209ENST00000597423 UHRF1BP1Q6BDS2 1440 aa21.64■■□□□ 1.06
TRIM28-209ENST00000597423 VGFO15240 615 aaPredicted RBP21.64■■□□□ 1.05
TRIM28-209ENST00000597423 PLPPR3Q6T4P5 718 aa21.64■■□□□ 1.05
TRIM28-209ENST00000597423 KIF1BO60333 1816 aa21.64■■□□□ 1.05
TRIM28-209ENST00000597423 PIK3C2BO00750 1634 aa21.62■■□□□ 1.05
TRIM28-209ENST00000597423 NBPF8Q3BBV2 869 aa21.62■■□□□ 1.05
TRIM28-209ENST00000597423 ADAMTSL3P82987 1691 aa21.62■■□□□ 1.05
TRIM28-209ENST00000597423 NLRP1Q9C000 1473 aa21.6■■□□□ 1.05
TRIM28-209ENST00000597423 ADGRB3O60242 1522 aa21.6■■□□□ 1.05
TRIM28-209ENST00000597423 MADDQ8WXG6 1647 aa21.59■■□□□ 1.05
TRIM28-209ENST00000597423 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.58■■□□□ 1.05
TRIM28-209ENST00000597423 C3P01024 1663 aa21.56■■□□□ 1.04
TRIM28-209ENST00000597423 PRAG1Q86YV5 1406 aa21.56■■□□□ 1.04
TRIM28-209ENST00000597423 THEMISQ8N1K5 641 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-209ENST00000597423 RIMS1Q86UR5 1692 aaKnown RBP21.55■■□□□ 1.04
TRIM28-209ENST00000597423 ZNF316A6NFI3 1004 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-209ENST00000597423 MYOM2P54296 1465 aa21.53■■□□□ 1.04
TRIM28-209ENST00000597423 EIF4G2P78344 907 aaKnown RBP eCLIP21.53■■□□□ 1.04
TRIM28-209ENST00000597423 A2ML1A8K2U0 1454 aa21.52■■□□□ 1.04
TRIM28-209ENST00000597423 TMEM131LA2VDJ0 1609 aa21.52■■□□□ 1.04
TRIM28-209ENST00000597423 CARD11Q9BXL7 1154 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms