RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 STRCP1A6NGW2 1772 aa25.55■■□□□ 1.68
LIG1-214ENST00000597146 SENP3Q9H4L4 574 aaPredicted RBP25.54■■□□□ 1.68
LIG1-214ENST00000597146 TNRQ92752 1358 aa25.53■■□□□ 1.68
LIG1-214ENST00000597146 IQGAP1P46940 1657 aa25.51■■□□□ 1.67
LIG1-214ENST00000597146 FBXO31Q5XUX0 539 aaPredicted RBP25.5■■□□□ 1.67
LIG1-214ENST00000597146 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.5■■□□□ 1.67
LIG1-214ENST00000597146 DEPDC5O75140 1603 aa25.49■■□□□ 1.67
LIG1-214ENST00000597146 RNF17Q9BXT8 1623 aaKnown RBP25.49■■□□□ 1.67
LIG1-214ENST00000597146 CFDP1Q9UEE9 299 aaPredicted RBP25.49■■□□□ 1.67
LIG1-214ENST00000597146 PZPP20742 1482 aa25.48■■□□□ 1.67
LIG1-214ENST00000597146 KDM5DQ9BY66 1539 aa25.47■■□□□ 1.67
LIG1-214ENST00000597146 NPHP4O75161 1426 aaPredicted RBP25.46■■□□□ 1.67
LIG1-214ENST00000597146 CCNB3Q8WWL7 1395 aa25.46■■□□□ 1.67
LIG1-214ENST00000597146 SYNMO15061 1565 aa25.45■■□□□ 1.66
LIG1-214ENST00000597146 MED14O60244 1454 aa25.45■■□□□ 1.66
LIG1-214ENST00000597146 TIAM1Q13009 1591 aa25.44■■□□□ 1.66
LIG1-214ENST00000597146 UGGT1Q9NYU2 1555 aa25.44■■□□□ 1.66
LIG1-214ENST00000597146 ANKLE2Q86XL3 938 aa25.43■■□□□ 1.66
LIG1-214ENST00000597146 LRRC7Q96NW7 1537 aa25.42■■□□□ 1.66
LIG1-214ENST00000597146 MBD5Q9P267 1494 aa25.41■■□□□ 1.66
LIG1-214ENST00000597146 ZNF644Q9H582 1327 aaPredicted RBP25.41■■□□□ 1.66
LIG1-214ENST00000597146 FAM135AQ9P2D6 1515 aa25.41■■□□□ 1.66
LIG1-214ENST00000597146 DHX29Q7Z478 1369 aaKnown RBP25.4■■□□□ 1.66
LIG1-214ENST00000597146 NLRP1Q9C000 1473 aa25.4■■□□□ 1.66
LIG1-214ENST00000597146 RGS17Q9UGC6 210 aaPredicted RBP25.38■■□□□ 1.65
LIG1-214ENST00000597146 ZC3H13Q5T200 1668 aaKnown RBP25.37■■□□□ 1.65
LIG1-214ENST00000597146 RTEL1-TNFRSF6BF6WH68 1400 aa25.37■■□□□ 1.65
LIG1-214ENST00000597146 MIA2Q96PC5 1412 aa25.36■■□□□ 1.65
LIG1-214ENST00000597146 KIF3BO15066 747 aa25.35■■□□□ 1.65
LIG1-214ENST00000597146 XIRP1Q702N8 1843 aaKnown RBP25.35■■□□□ 1.65
LIG1-214ENST00000597146 THEMISQ8N1K5 641 aaPredicted RBP25.34■■□□□ 1.65
LIG1-214ENST00000597146 MTUS2Q5JR59 1369 aa25.32■■□□□ 1.64
LIG1-214ENST00000597146 WASHC2CQ9Y4E1 1318 aa25.31■■□□□ 1.64
LIG1-214ENST00000597146 SETD1AO15047 1707 aaKnown RBP25.28■■□□□ 1.64
LIG1-214ENST00000597146 CCDC141Q6ZP82 1450 aa25.28■■□□□ 1.64
LIG1-214ENST00000597146 EHBP1L1Q8N3D4 1523 aa25.27■■□□□ 1.64
LIG1-214ENST00000597146 UBR1Q8IWV7 1749 aa25.26■■□□□ 1.63
LIG1-214ENST00000597146 CAMSAP2Q08AD1 1489 aa25.23■■□□□ 1.63
LIG1-214ENST00000597146 CFAP65Q6ZU64 1925 aaKnown RBP25.23■■□□□ 1.63
LIG1-214ENST00000597146 ABCC3O15438 1527 aa25.22■■□□□ 1.63
LIG1-214ENST00000597146 CEP152O94986 1710 aa25.2■■□□□ 1.63
LIG1-214ENST00000597146 POTEAQ6S8J7 498 aa25.2■■□□□ 1.62
LIG1-214ENST00000597146 ERVK-7P63135 1459 aa25.2■■□□□ 1.62
LIG1-214ENST00000597146 SCAF11Q99590 1463 aaKnown RBP25.18■■□□□ 1.62
LIG1-214ENST00000597146 CEP162Q5TB80 1403 aa25.18■■□□□ 1.62
LIG1-214ENST00000597146 MROH1Q8NDA8 1641 aa25.15■■□□□ 1.62
LIG1-214ENST00000597146 ROBO1Q9Y6N7 1651 aa25.14■■□□□ 1.62
LIG1-214ENST00000597146 CHIC1Q5VXU3 224 aa25.14■■□□□ 1.62
LIG1-214ENST00000597146 NCOA2Q15596 1464 aa25.14■■□□□ 1.61
LIG1-214ENST00000597146 ARHGEF5Q12774 1597 aa25.14■■□□□ 1.61
LIG1-214ENST00000597146 EIF2AK4Q9P2K8 1649 aaKnown RBP25.11■■□□□ 1.61
LIG1-214ENST00000597146 ARHGAP23Q9P227 1491 aa25.1■■□□□ 1.61
LIG1-214ENST00000597146 SLIT1O75093 1534 aa25.1■■□□□ 1.61
LIG1-214ENST00000597146 FAM135BQ49AJ0 1406 aa25.09■■□□□ 1.61
LIG1-214ENST00000597146 LTKP29376 864 aa25.07■■□□□ 1.6
LIG1-214ENST00000597146 MAP3K1Q13233 1512 aa25.04■■□□□ 1.6
LIG1-214ENST00000597146 MAST1Q9Y2H9 1570 aa25.04■■□□□ 1.6
LIG1-214ENST00000597146 PIK3C2BO00750 1634 aa25.04■■□□□ 1.6
LIG1-214ENST00000597146 RSPH4AQ5TD94 716 aa25.02■■□□□ 1.6
LIG1-214ENST00000597146 TXNDC2Q86VQ3 553 aa25.02■■□□□ 1.6
LIG1-214ENST00000597146 TMEM94Q12767 1356 aa25.01■■□□□ 1.59
LIG1-214ENST00000597146 PHLPP1O60346 1717 aa25■■□□□ 1.59
LIG1-214ENST00000597146 TSPY4P0CV99 314 aa24.98■■□□□ 1.59
LIG1-214ENST00000597146 TSPY10P0CW01 314 aa24.98■■□□□ 1.59
LIG1-214ENST00000597146 RBM33Q96EV2 1170 aaKnown RBP24.95■■□□□ 1.58
LIG1-214ENST00000597146 LRRC9Q6ZRR7 1453 aa24.95■■□□□ 1.58
LIG1-214ENST00000597146 PRDM15P57071 1507 aaPredicted RBP24.93■■□□□ 1.58
LIG1-214ENST00000597146 EID1Q9Y6B2 187 aa24.92■■□□□ 1.58
LIG1-214ENST00000597146 NWD1Q149M9 1564 aa24.92■■□□□ 1.58
LIG1-214ENST00000597146 TMEM2Q9UHN6 1383 aa24.92■■□□□ 1.58
LIG1-214ENST00000597146 KDM5AP29375 1690 aaKnown RBP24.9■■□□□ 1.58
LIG1-214ENST00000597146 COL16A1Q07092 1604 aaPredicted RBP24.9■■□□□ 1.58
LIG1-214ENST00000597146 ARHGAP31Q2M1Z3 1444 aa24.89■■□□□ 1.58
LIG1-214ENST00000597146 TET3O43151 1660 aa24.89■■□□□ 1.58
LIG1-214ENST00000597146 EFCAB6Q5THR3 1501 aa24.89■■□□□ 1.57
LIG1-214ENST00000597146 DUOX2Q9NRD8 1548 aa24.89■■□□□ 1.57
LIG1-214ENST00000597146 LRP6O75581 1613 aa24.87■■□□□ 1.57
LIG1-214ENST00000597146 NKTRP30414 1462 aaKnown RBP24.87■■□□□ 1.57
LIG1-214ENST00000597146 JCADQ9P266 1359 aa24.86■■□□□ 1.57
LIG1-214ENST00000597146 KCNA6P17658 529 aa24.86■■□□□ 1.57
LIG1-214ENST00000597146 PROSER2Q86WR7 435 aaPredicted RBP24.86■■□□□ 1.57
LIG1-214ENST00000597146 SLC26A8Q96RN1 970 aa24.85■■□□□ 1.57
LIG1-214ENST00000597146 UPF1Q92900 1129 aaKnown RBP eCLIP24.84■■□□□ 1.57
LIG1-214ENST00000597146 CROCC2H7BZ55 1655 aa24.83■■□□□ 1.57
LIG1-214ENST00000597146 MSH6P52701 1360 aa24.81■■□□□ 1.56
LIG1-214ENST00000597146 STAG3Q9UJ98 1225 aa24.81■■□□□ 1.56
LIG1-214ENST00000597146 TRIM52Q96A61 297 aa24.8■■□□□ 1.56
LIG1-214ENST00000597146 ADGRB3O60242 1522 aa24.78■■□□□ 1.56
LIG1-214ENST00000597146 CHD2O14647 1828 aaKnown RBP24.78■■□□□ 1.56
LIG1-214ENST00000597146 SLAIN2Q9P270 581 aa24.77■■□□□ 1.56
LIG1-214ENST00000597146 SHPRHQ149N8 1683 aa24.77■■□□□ 1.56
LIG1-214ENST00000597146 KIF15Q9NS87 1388 aa24.76■■□□□ 1.55
LIG1-214ENST00000597146 ERBINQ96RT1 1412 aa24.76■■□□□ 1.55
LIG1-214ENST00000597146 MYO5BQ9ULV0 1848 aa24.75■■□□□ 1.55
LIG1-214ENST00000597146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.74■■□□□ 1.55
LIG1-214ENST00000597146 IDI1Q13907 227 aa24.73■■□□□ 1.55
LIG1-214ENST00000597146 MEX3CQ5U5Q3 659 aaKnown RBP24.72■■□□□ 1.55
LIG1-214ENST00000597146 MYOM3Q5VTT5 1437 aa24.71■■□□□ 1.55
LIG1-214ENST00000597146 AHDC1Q5TGY3 1603 aaPredicted RBP24.71■■□□□ 1.55
LIG1-214ENST00000597146 FGD6Q6ZV73 1430 aa24.7■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms