RNA–Protein interactions for RNA: ENST00000596365.5

LINC00649-208, long intergenic non-protein coding RNA 649, human

TSL 5

Gene LINC00649, Length 682 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00649-208	ENST00000596365	PIP4K2B	P78356	416 aa		14.26	□□□□□ -0.13
LINC00649-208	ENST00000596365	POLA2	Q14181	598 aa		14.26	□□□□□ -0.13
LINC00649-208	ENST00000596365	PREX2	Q70Z35	1606 aa		14.26	□□□□□ -0.13
LINC00649-208	ENST00000596365	FMN1	Q68DA7	1419 aa		14.25	□□□□□ -0.13
LINC00649-208	ENST00000596365	CLTC	Q00610	1675 aa	Known RBP	14.25	□□□□□ -0.13
LINC00649-208	ENST00000596365	EEA1	Q15075	1411 aa		14.24	□□□□□ -0.13
LINC00649-208	ENST00000596365	CPS1	P31327	1500 aa		14.23	□□□□□ -0.13
LINC00649-208	ENST00000596365	POLR1A	O95602	1720 aa	Predicted RBP	14.21	□□□□□ -0.13
LINC00649-208	ENST00000596365	LRRIQ1	Q96JM4	1722 aa		14.21	□□□□□ -0.14
LINC00649-208	ENST00000596365	PTPRK	Q15262	1439 aa		14.2	□□□□□ -0.14
LINC00649-208	ENST00000596365	CDC42BPA	Q5VT25	1732 aa		14.18	□□□□□ -0.14
LINC00649-208	ENST00000596365	SAMD9L	Q8IVG5	1584 aa		14.18	□□□□□ -0.14
LINC00649-208	ENST00000596365	SHANK2	Q9UPX8	1470 aa		14.18	□□□□□ -0.14
LINC00649-208	ENST00000596365	DNMT1	P26358	1616 aa	Known RBP	14.17	□□□□□ -0.14
LINC00649-208	ENST00000596365	A2ML1	A8K2U0	1454 aa		14.17	□□□□□ -0.14
LINC00649-208	ENST00000596365	PLXNC1	O60486	1568 aa		14.14	□□□□□ -0.15
LINC00649-208	ENST00000596365	NEURL4	Q96JN8	1562 aa		14.14	□□□□□ -0.15
LINC00649-208	ENST00000596365	SPAG9	O60271	1321 aa	Known RBP	14.14	□□□□□ -0.15
LINC00649-208	ENST00000596365	ATP7A	Q04656	1500 aa		14.13	□□□□□ -0.15
LINC00649-208	ENST00000596365	ARHGAP35	Q9NRY4	1499 aa		14.12	□□□□□ -0.15
LINC00649-208	ENST00000596365	ALK	Q9UM73	1620 aa		14.12	□□□□□ -0.15
LINC00649-208	ENST00000596365	A2M	P01023	1474 aa		14.12	□□□□□ -0.15
LINC00649-208	ENST00000596365	SYCP2	Q9BX26	1530 aa		14.11	□□□□□ -0.15
LINC00649-208	ENST00000596365	GGT6	Q6P531	493 aa		14.11	□□□□□ -0.15
LINC00649-208	ENST00000596365	VWDE	Q8N2E2	1590 aa		14.11	□□□□□ -0.15
LINC00649-208	ENST00000596365	INO80	Q9ULG1	1556 aa	Predicted RBP	14.11	□□□□□ -0.15
LINC00649-208	ENST00000596365	ADGB	Q8N7X0	1667 aa		14.1	□□□□□ -0.15
LINC00649-208	ENST00000596365	ZNF777	Q9ULD5	760 aa	Predicted RBP	14.09	□□□□□ -0.15
LINC00649-208	ENST00000596365	CCDC18	Q5T9S5	1454 aa		14.09	□□□□□ -0.15
LINC00649-208	ENST00000596365	UBTF	P17480	764 aa	Known RBP	14.07	□□□□□ -0.16
LINC00649-208	ENST00000596365	HNRNPM	P52272	730 aa	Known RBP eCLIP	14.07	□□□□□ -0.16
LINC00649-208	ENST00000596365	ANKLE2	Q86XL3	938 aa		14.07	□□□□□ -0.16
LINC00649-208	ENST00000596365	RNF17	Q9BXT8	1623 aa	Known RBP	14.07	□□□□□ -0.16
LINC00649-208	ENST00000596365	DEPDC5	O75140	1603 aa		14.06	□□□□□ -0.16
LINC00649-208	ENST00000596365	RGS17	Q9UGC6	210 aa	Predicted RBP	14.06	□□□□□ -0.16
LINC00649-208	ENST00000596365	PLEKHH2	Q8IVE3	1493 aa		14.06	□□□□□ -0.16
LINC00649-208	ENST00000596365	TNR	Q92752	1358 aa		14.05	□□□□□ -0.16
LINC00649-208	ENST00000596365	KIAA1107	Q9UPP5	1409 aa		14.05	□□□□□ -0.16
LINC00649-208	ENST00000596365	MED14	O60244	1454 aa		14.05	□□□□□ -0.16
LINC00649-208	ENST00000596365	IQGAP1	P46940	1657 aa		14.04	□□□□□ -0.16
LINC00649-208	ENST00000596365	NPHP4	O75161	1426 aa	Predicted RBP	14.04	□□□□□ -0.16
LINC00649-208	ENST00000596365	SYNM	O15061	1565 aa		14.04	□□□□□ -0.16
LINC00649-208	ENST00000596365	STRCP1	A6NGW2	1772 aa		14.04	□□□□□ -0.16
LINC00649-208	ENST00000596365	THEMIS	Q8N1K5	641 aa	Predicted RBP	14.03	□□□□□ -0.16
LINC00649-208	ENST00000596365	LRRC7	Q96NW7	1537 aa		14.02	□□□□□ -0.16
LINC00649-208	ENST00000596365	GPATCH8	Q9UKJ3	1502 aa	Known RBP	14.02	□□□□□ -0.16
LINC00649-208	ENST00000596365	CASKIN1	Q8WXD9	1431 aa		14.02	□□□□□ -0.16
LINC00649-208	ENST00000596365	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
LINC00649-208	ENST00000596365	PZP	P20742	1482 aa		14.01	□□□□□ -0.17
LINC00649-208	ENST00000596365	UGGT1	Q9NYU2	1555 aa		14	□□□□□ -0.17
LINC00649-208	ENST00000596365	FAM135A	Q9P2D6	1515 aa		14	□□□□□ -0.17
LINC00649-208	ENST00000596365	NLRP1	Q9C000	1473 aa		14	□□□□□ -0.17
LINC00649-208	ENST00000596365	FBXO31	Q5XUX0	539 aa	Predicted RBP	14	□□□□□ -0.17
LINC00649-208	ENST00000596365	KDM5D	Q9BY66	1539 aa		13.99	□□□□□ -0.17
LINC00649-208	ENST00000596365	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.98	□□□□□ -0.17
LINC00649-208	ENST00000596365	MIA2	Q96PC5	1412 aa		13.97	□□□□□ -0.17
LINC00649-208	ENST00000596365	POTEA	Q6S8J7	498 aa		13.96	□□□□□ -0.17
LINC00649-208	ENST00000596365	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.96	□□□□□ -0.17
LINC00649-208	ENST00000596365	DHX29	Q7Z478	1369 aa	Known RBP	13.96	□□□□□ -0.18
LINC00649-208	ENST00000596365	FYCO1	Q9BQS8	1478 aa		13.95	□□□□□ -0.18
LINC00649-208	ENST00000596365	CCNB3	Q8WWL7	1395 aa		13.95	□□□□□ -0.18
LINC00649-208	ENST00000596365	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.94	□□□□□ -0.18
LINC00649-208	ENST00000596365	SETD1A	O15047	1707 aa	Known RBP	13.94	□□□□□ -0.18
LINC00649-208	ENST00000596365	XIRP1	Q702N8	1843 aa	Known RBP	13.94	□□□□□ -0.18
LINC00649-208	ENST00000596365	ZC3H13	Q5T200	1668 aa	Known RBP	13.94	□□□□□ -0.18
LINC00649-208	ENST00000596365	WASHC2C	Q9Y4E1	1318 aa		13.93	□□□□□ -0.18
LINC00649-208	ENST00000596365	KIF3B	O15066	747 aa		13.93	□□□□□ -0.18
LINC00649-208	ENST00000596365	FAM135B	Q49AJ0	1406 aa		13.9	□□□□□ -0.18
LINC00649-208	ENST00000596365	MBD5	Q9P267	1494 aa		13.89	□□□□□ -0.19
LINC00649-208	ENST00000596365	ZNF644	Q9H582	1327 aa	Predicted RBP	13.87	□□□□□ -0.19
LINC00649-208	ENST00000596365	UBR1	Q8IWV7	1749 aa		13.87	□□□□□ -0.19
LINC00649-208	ENST00000596365	TIAM1	Q13009	1591 aa		13.86	□□□□□ -0.19
LINC00649-208	ENST00000596365	SCAF11	Q99590	1463 aa	Known RBP	13.86	□□□□□ -0.19
LINC00649-208	ENST00000596365	ROBO1	Q9Y6N7	1651 aa		13.85	□□□□□ -0.19
LINC00649-208	ENST00000596365	CFAP65	Q6ZU64	1925 aa	Known RBP	13.85	□□□□□ -0.19
LINC00649-208	ENST00000596365	MTUS2	Q5JR59	1369 aa		13.84	□□□□□ -0.19
LINC00649-208	ENST00000596365	CCDC141	Q6ZP82	1450 aa		13.83	□□□□□ -0.2
LINC00649-208	ENST00000596365	ERVK-7	P63135	1459 aa		13.82	□□□□□ -0.2
LINC00649-208	ENST00000596365	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
LINC00649-208	ENST00000596365	RBM42	Q9BTD8	480 aa	Known RBP	13.81	□□□□□ -0.2
LINC00649-208	ENST00000596365	LRRC9	Q6ZRR7	1453 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	ABCC3	O15438	1527 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	SLIT1	O75093	1534 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	RSPH4A	Q5TD94	716 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	TXNDC2	Q86VQ3	553 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	PHLPP1	O60346	1717 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	ARHGAP23	Q9P227	1491 aa		13.8	□□□□□ -0.2
LINC00649-208	ENST00000596365	LTK	P29376	864 aa		13.79	□□□□□ -0.2
LINC00649-208	ENST00000596365	NCOA2	Q15596	1464 aa		13.79	□□□□□ -0.2
LINC00649-208	ENST00000596365	EID1	Q9Y6B2	187 aa		13.78	□□□□□ -0.2
LINC00649-208	ENST00000596365	TMEM94	Q12767	1356 aa		13.78	□□□□□ -0.2
LINC00649-208	ENST00000596365	EHBP1L1	Q8N3D4	1523 aa		13.78	□□□□□ -0.2
LINC00649-208	ENST00000596365	CEP152	O94986	1710 aa		13.77	□□□□□ -0.21
LINC00649-208	ENST00000596365	JCAD	Q9P266	1359 aa		13.77	□□□□□ -0.21
LINC00649-208	ENST00000596365	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.76	□□□□□ -0.21
LINC00649-208	ENST00000596365	CAMSAP2	Q08AD1	1489 aa		13.76	□□□□□ -0.21
LINC00649-208	ENST00000596365	MKRN4P	Q13434	485 aa	Predicted RBP	13.76	□□□□□ -0.21
LINC00649-208	ENST00000596365	ARHGEF5	Q12774	1597 aa		13.75	□□□□□ -0.21
LINC00649-208	ENST00000596365	MAP3K1	Q13233	1512 aa		13.75	□□□□□ -0.21
LINC00649-208	ENST00000596365	CEP162	Q5TB80	1403 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms