RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 EIF2AK4Q9P2K8 1649 aaKnown RBP22.12■■□□□ 1.13
VRK3-207ENST00000594092 FAM135AQ9P2D6 1515 aa22.12■■□□□ 1.13
VRK3-207ENST00000594092 DIP2CQ9Y2E4 1556 aa22.11■■□□□ 1.13
VRK3-207ENST00000594092 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.11■■□□□ 1.13
VRK3-207ENST00000594092 COL17A1Q9UMD9 1497 aaPredicted RBP22.11■■□□□ 1.13
VRK3-207ENST00000594092 NEUROD1Q13562 356 aa22.1■■□□□ 1.13
VRK3-207ENST00000594092 PKD2Q13563 968 aa22.1■■□□□ 1.13
VRK3-207ENST00000594092 TRHP20396 242 aaPredicted RBP22.1■■□□□ 1.13
VRK3-207ENST00000594092 DEPDC5O75140 1603 aa22.1■■□□□ 1.13
VRK3-207ENST00000594092 IQGAP3Q86VI3 1631 aa22.1■■□□□ 1.13
VRK3-207ENST00000594092 ANKRD30BQ9BXX2 1392 aa22.09■■□□□ 1.13
VRK3-207ENST00000594092 YEATS2Q9ULM3 1422 aa22.09■■□□□ 1.13
VRK3-207ENST00000594092 KIF3BO15066 747 aa22.08■■□□□ 1.13
VRK3-207ENST00000594092 MROH1Q8NDA8 1641 aa22.04■■□□□ 1.12
VRK3-207ENST00000594092 PRDM15P57071 1507 aaPredicted RBP22.03■■□□□ 1.12
VRK3-207ENST00000594092 RNF17Q9BXT8 1623 aaKnown RBP22.02■■□□□ 1.12
VRK3-207ENST00000594092 BCORL1Q5H9F3 1711 aa22.02■■□□□ 1.12
VRK3-207ENST00000594092 VWDEQ8N2E2 1590 aa22.02■■□□□ 1.12
VRK3-207ENST00000594092 TIMELESSQ9UNS1 1208 aa22.02■■□□□ 1.12
VRK3-207ENST00000594092 KANK1Q14678 1352 aa22■■□□□ 1.11
VRK3-207ENST00000594092 ATP10AO60312 1499 aa21.99■■□□□ 1.11
VRK3-207ENST00000594092 RPRD2Q5VT52 1461 aaKnown RBP21.97■■□□□ 1.11
VRK3-207ENST00000594092 TONSLQ96HA7 1378 aa21.97■■□□□ 1.11
VRK3-207ENST00000594092 REREQ9P2R6 1566 aa21.96■■□□□ 1.11
VRK3-207ENST00000594092 ARHGEF40Q8TER5 1519 aa21.95■■□□□ 1.1
VRK3-207ENST00000594092 TET3O43151 1660 aa21.95■■□□□ 1.1
VRK3-207ENST00000594092 GGT6Q6P531 493 aa21.93■■□□□ 1.1
VRK3-207ENST00000594092 LMTK2Q8IWU2 1503 aa21.92■■□□□ 1.1
VRK3-207ENST00000594092 E9PCH4 1651 aa21.92■■□□□ 1.1
VRK3-207ENST00000594092 PLA2R1Q13018 1463 aa21.92■■□□□ 1.1
VRK3-207ENST00000594092 CEP152O94986 1710 aa21.89■■□□□ 1.1
VRK3-207ENST00000594092 AGLP35573 1532 aa21.89■■□□□ 1.1
VRK3-207ENST00000594092 PPP1R15AO75807 674 aaPredicted RBP21.89■■□□□ 1.09
VRK3-207ENST00000594092 EFCAB6Q5THR3 1501 aa21.87■■□□□ 1.09
VRK3-207ENST00000594092 ABCC3O15438 1527 aa21.87■■□□□ 1.09
VRK3-207ENST00000594092 SIGLEC1Q9BZZ2 1709 aa21.86■■□□□ 1.09
VRK3-207ENST00000594092 WASHC2CQ9Y4E1 1318 aa21.85■■□□□ 1.09
VRK3-207ENST00000594092 CCDC144AA2RUR9 1427 aa21.85■■□□□ 1.09
VRK3-207ENST00000594092 L3MBTL2Q969R5 705 aa21.85■■□□□ 1.09
VRK3-207ENST00000594092 PTPRTO14522 1441 aa21.83■■□□□ 1.09
VRK3-207ENST00000594092 SPHKAPQ2M3C7 1700 aa21.82■■□□□ 1.08
VRK3-207ENST00000594092 ZC3H13Q5T200 1668 aaKnown RBP21.81■■□□□ 1.08
VRK3-207ENST00000594092 TRPM2O94759 1503 aa21.81■■□□□ 1.08
VRK3-207ENST00000594092 CAMSAP1Q5T5Y3 1602 aa21.79■■□□□ 1.08
VRK3-207ENST00000594092 NPATQ14207 1427 aa21.79■■□□□ 1.08
VRK3-207ENST00000594092 PPP6R1Q9UPN7 881 aa21.77■■□□□ 1.08
VRK3-207ENST00000594092 ARHGAP31Q2M1Z3 1444 aa21.75■■□□□ 1.07
VRK3-207ENST00000594092 CLTCL1P53675 1640 aa21.74■■□□□ 1.07
VRK3-207ENST00000594092 MLECQ14165 292 aa21.73■■□□□ 1.07
VRK3-207ENST00000594092 ARID4BQ4LE39 1312 aaPredicted RBP21.71■■□□□ 1.07
VRK3-207ENST00000594092 ZNF316A6NFI3 1004 aaPredicted RBP21.71■■□□□ 1.07
VRK3-207ENST00000594092 CFAP65Q6ZU64 1925 aaKnown RBP21.7■■□□□ 1.06
VRK3-207ENST00000594092 NOS1P29475 1434 aa21.7■■□□□ 1.06
VRK3-207ENST00000594092 SPATA31E1Q6ZUB1 1445 aa21.7■■□□□ 1.06
VRK3-207ENST00000594092 CNTLNQ9NXG0 1405 aa21.7■■□□□ 1.06
VRK3-207ENST00000594092 UGGT1Q9NYU2 1555 aa21.69■■□□□ 1.06
VRK3-207ENST00000594092 NBPF8Q3BBV2 869 aa21.69■■□□□ 1.06
VRK3-207ENST00000594092 CLTCQ00610 1675 aaKnown RBP21.68■■□□□ 1.06
VRK3-207ENST00000594092 RGL3Q3MIN7 710 aa21.68■■□□□ 1.06
VRK3-207ENST00000594092 DCAF11Q8TEB1 546 aa21.66■■□□□ 1.06
VRK3-207ENST00000594092 UHRF1BP1Q6BDS2 1440 aa21.65■■□□□ 1.06
VRK3-207ENST00000594092 SYNMO15061 1565 aa21.64■■□□□ 1.06
VRK3-207ENST00000594092 PREX1Q8TCU6 1659 aa21.63■■□□□ 1.05
VRK3-207ENST00000594092 NEURL4Q96JN8 1562 aa21.63■■□□□ 1.05
VRK3-207ENST00000594092 KDM2AQ9Y2K7 1162 aa21.63■■□□□ 1.05
VRK3-207ENST00000594092 ESF1Q9H501 851 aaKnown RBP21.62■■□□□ 1.05
VRK3-207ENST00000594092 KIF1BO60333 1816 aa21.61■■□□□ 1.05
VRK3-207ENST00000594092 PIK3C2BO00750 1634 aa21.6■■□□□ 1.05
VRK3-207ENST00000594092 ZNF326Q5BKZ1 582 aaKnown RBP21.6■■□□□ 1.05
VRK3-207ENST00000594092 ERVK-7P63135 1459 aa21.6■■□□□ 1.05
VRK3-207ENST00000594092 FBXO31Q5XUX0 539 aaPredicted RBP21.59■■□□□ 1.05
VRK3-207ENST00000594092 ADGRB3O60242 1522 aa21.58■■□□□ 1.04
VRK3-207ENST00000594092 ZMYM3Q14202 1370 aa21.57■■□□□ 1.04
VRK3-207ENST00000594092 PRAG1Q86YV5 1406 aa21.57■■□□□ 1.04
VRK3-207ENST00000594092 MROH2AA6NES4 1674 aa21.57■■□□□ 1.04
VRK3-207ENST00000594092 SLC52A1Q9NWF4 448 aa21.56■■□□□ 1.04
VRK3-207ENST00000594092 SPATA31D1Q6ZQQ2 1576 aa21.56■■□□□ 1.04
VRK3-207ENST00000594092 RALGAPBQ86X10 1494 aa21.54■■□□□ 1.04
VRK3-207ENST00000594092 IDI1Q13907 227 aa21.54■■□□□ 1.04
VRK3-207ENST00000594092 CHGAP10645 457 aaKnown RBP21.53■■□□□ 1.04
VRK3-207ENST00000594092 STAC3Q96MF2 364 aa21.52■■□□□ 1.04
VRK3-207ENST00000594092 FER1L4A9Z1Z3 1794 aa21.5■■□□□ 1.03
VRK3-207ENST00000594092 TRPM1Q7Z4N2 1603 aa21.49■■□□□ 1.03
VRK3-207ENST00000594092 IFT172Q9UG01 1749 aa21.49■■□□□ 1.03
VRK3-207ENST00000594092 MADDQ8WXG6 1647 aa21.49■■□□□ 1.03
VRK3-207ENST00000594092 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
VRK3-207ENST00000594092 HIRIP3Q9BW71 556 aaPredicted RBP21.48■■□□□ 1.03
VRK3-207ENST00000594092 EIF4G2P78344 907 aaKnown RBP eCLIP21.48■■□□□ 1.031e-6■■■■■ 27.9
VRK3-207ENST00000594092 MYOM2P54296 1465 aa21.47■■□□□ 1.03
VRK3-207ENST00000594092 HSPA5P11021 654 aaKnown RBP21.47■■□□□ 1.03
VRK3-207ENST00000594092 TMEM131LA2VDJ0 1609 aa21.47■■□□□ 1.03
VRK3-207ENST00000594092 RPGRIP1LQ68CZ1 1315 aa21.46■■□□□ 1.03
VRK3-207ENST00000594092 PPLO60437 1756 aa21.45■■□□□ 1.02
VRK3-207ENST00000594092 ROCK2O75116 1388 aaKnown RBP21.44■■□□□ 1.02
VRK3-207ENST00000594092 CARD11Q9BXL7 1154 aa21.43■■□□□ 1.02
VRK3-207ENST00000594092 MYO5BQ9ULV0 1848 aa21.43■■□□□ 1.02
VRK3-207ENST00000594092 C3P01024 1663 aa21.43■■□□□ 1.02
VRK3-207ENST00000594092 TNRQ92752 1358 aa21.43■■□□□ 1.02
VRK3-207ENST00000594092 ADGRF5Q8IZF2 1346 aa21.43■■□□□ 1.02
VRK3-207ENST00000594092 GPRASP1Q5JY77 1395 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms