RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 SPAG9O60271 1321 aaKnown RBP14.91□□□□□ -0.02
VPS4B-206ENST00000591475 L3MBTL2Q969R5 705 aa14.91□□□□□ -0.02
VPS4B-206ENST00000591475 RTEL1-TNFRSF6BF6WH68 1400 aa14.91□□□□□ -0.02
VPS4B-206ENST00000591475 RPRD2Q5VT52 1461 aaKnown RBP14.9□□□□□ -0.02
VPS4B-206ENST00000591475 KIF13AQ9H1H9 1805 aa14.9□□□□□ -0.02
VPS4B-206ENST00000591475 KIF15Q9NS87 1388 aa14.89□□□□□ -0.03
VPS4B-206ENST00000591475 IRX6P78412 446 aaPredicted RBP14.89□□□□□ -0.03
VPS4B-206ENST00000591475 FANCIQ9NVI1 1328 aa14.89□□□□□ -0.03
VPS4B-206ENST00000591475 POGZQ7Z3K3 1410 aa14.88□□□□□ -0.03
VPS4B-206ENST00000591475 PRKRIP1Q9H875 184 aaPredicted RBP14.88□□□□□ -0.03
VPS4B-206ENST00000591475 ANKRD50Q9ULJ7 1429 aa14.88□□□□□ -0.03
VPS4B-206ENST00000591475 PPP4R2Q9NY27 417 aa14.87□□□□□ -0.03
VPS4B-206ENST00000591475 ANKRD30BQ9BXX2 1392 aa14.87□□□□□ -0.03
VPS4B-206ENST00000591475 PLXNC1O60486 1568 aa14.87□□□□□ -0.03
VPS4B-206ENST00000591475 CCDC184Q52MB2 194 aa14.86□□□□□ -0.03
VPS4B-206ENST00000591475 C11orf95C9JLR9 678 aaPredicted RBP14.85□□□□□ -0.03
VPS4B-206ENST00000591475 PPRC1Q5VV67 1664 aaKnown RBP14.85□□□□□ -0.03
VPS4B-206ENST00000591475 ZFYVE16Q7Z3T8 1539 aa14.85□□□□□ -0.03
VPS4B-206ENST00000591475 TSPOAP1O95153 1857 aa14.85□□□□□ -0.03
VPS4B-206ENST00000591475 MYT1LQ9UL68 1186 aa14.85□□□□□ -0.03
VPS4B-206ENST00000591475 ZBED9Q6R2W3 1325 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 KDM5CP41229 1560 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 MSH5O43196 834 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 FOXD1Q16676 465 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 MRS2Q9HD23 443 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 ATP7AQ04656 1500 aa14.84□□□□□ -0.03
VPS4B-206ENST00000591475 RAPGEF3O95398 923 aa14.83□□□□□ -0.03
VPS4B-206ENST00000591475 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.03
VPS4B-206ENST00000591475 INO80Q9ULG1 1556 aaPredicted RBP14.83□□□□□ -0.04
VPS4B-206ENST00000591475 MLH3Q9UHC1 1453 aa14.83□□□□□ -0.04
VPS4B-206ENST00000591475 DUOX2Q9NRD8 1548 aa14.83□□□□□ -0.04
VPS4B-206ENST00000591475 FAM9BQ8IZU0 186 aa14.83□□□□□ -0.04
VPS4B-206ENST00000591475 SPATA31E1Q6ZUB1 1445 aa14.82□□□□□ -0.04
VPS4B-206ENST00000591475 NBPF8Q3BBV2 869 aa14.82□□□□□ -0.04
VPS4B-206ENST00000591475 ERBINQ96RT1 1412 aa14.81□□□□□ -0.04
VPS4B-206ENST00000591475 KIF7Q2M1P5 1343 aa14.8□□□□□ -0.04
VPS4B-206ENST00000591475 HECW2Q9P2P5 1572 aa14.79□□□□□ -0.04
VPS4B-206ENST00000591475 SLC4A1APQ9BWU0 796 aaKnown RBP14.79□□□□□ -0.04
VPS4B-206ENST00000591475 RICTORQ6R327 1708 aa14.79□□□□□ -0.04
VPS4B-206ENST00000591475 KIDINS220Q9ULH0 1771 aa14.78□□□□□ -0.04
VPS4B-206ENST00000591475 ERICH6Q7L0X2 663 aa14.78□□□□□ -0.04
VPS4B-206ENST00000591475 DHX29Q7Z478 1369 aaKnown RBP14.77□□□□□ -0.04
VPS4B-206ENST00000591475 BCL11AQ9H165 835 aa14.76□□□□□ -0.05
VPS4B-206ENST00000591475 PZPP20742 1482 aa14.76□□□□□ -0.05
VPS4B-206ENST00000591475 ZMYM4Q5VZL5 1548 aa14.76□□□□□ -0.05
VPS4B-206ENST00000591475 MAGI2Q86UL8 1455 aa14.75□□□□□ -0.05
VPS4B-206ENST00000591475 FRMPD1Q5SYB0 1578 aa14.75□□□□□ -0.05
VPS4B-206ENST00000591475 NUP155O75694 1391 aa14.75□□□□□ -0.05
VPS4B-206ENST00000591475 A2MP01023 1474 aa14.74□□□□□ -0.05
VPS4B-206ENST00000591475 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
VPS4B-206ENST00000591475 BCORL1Q5H9F3 1711 aa14.73□□□□□ -0.05
VPS4B-206ENST00000591475 SMG6Q86US8 1419 aaKnown RBP14.73□□□□□ -0.05
VPS4B-206ENST00000591475 B4GALNT3Q6L9W6 998 aa14.72□□□□□ -0.05
VPS4B-206ENST00000591475 KDM5DQ9BY66 1539 aa14.72□□□□□ -0.05
VPS4B-206ENST00000591475 KIF3BO15066 747 aa14.71□□□□□ -0.05
VPS4B-206ENST00000591475 ABCA6Q8N139 1617 aa14.71□□□□□ -0.06
VPS4B-206ENST00000591475 EIF2AK4Q9P2K8 1649 aaKnown RBP14.71□□□□□ -0.06
VPS4B-206ENST00000591475 UNC13BO14795 1591 aa14.7□□□□□ -0.06
VPS4B-206ENST00000591475 YEATS2Q9ULM3 1422 aa14.7□□□□□ -0.06
VPS4B-206ENST00000591475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS4B-206ENST00000591475 DIP2CQ9Y2E4 1556 aa14.7□□□□□ -0.06
VPS4B-206ENST00000591475 ARID4BQ4LE39 1312 aaPredicted RBP14.69□□□□□ -0.06
VPS4B-206ENST00000591475 USP47Q96K76 1375 aa14.69□□□□□ -0.06
VPS4B-206ENST00000591475 FAM135AQ9P2D6 1515 aa14.67□□□□□ -0.06
VPS4B-206ENST00000591475 PKD2Q13563 968 aa14.67□□□□□ -0.06
VPS4B-206ENST00000591475 ATP10AO60312 1499 aa14.67□□□□□ -0.06
VPS4B-206ENST00000591475 KANK1Q14678 1352 aa14.67□□□□□ -0.06
VPS4B-206ENST00000591475 DEPDC5O75140 1603 aa14.66□□□□□ -0.06
VPS4B-206ENST00000591475 NUDCQ9Y266 331 aa14.66□□□□□ -0.06
VPS4B-206ENST00000591475 ROCK2O75116 1388 aaKnown RBP14.65□□□□□ -0.06
VPS4B-206ENST00000591475 IQGAP3Q86VI3 1631 aa14.65□□□□□ -0.06
VPS4B-206ENST00000591475 RALGAPBQ86X10 1494 aa14.64□□□□□ -0.07
VPS4B-206ENST00000591475 PRDM15P57071 1507 aaPredicted RBP14.64□□□□□ -0.07
VPS4B-206ENST00000591475 RNF123Q5XPI4 1314 aa14.64□□□□□ -0.07
VPS4B-206ENST00000591475 UHRF1BP1Q6BDS2 1440 aa14.64□□□□□ -0.07
VPS4B-206ENST00000591475 REREQ9P2R6 1566 aa14.63□□□□□ -0.07
VPS4B-206ENST00000591475 GGT6Q6P531 493 aa14.63□□□□□ -0.07
VPS4B-206ENST00000591475 POLR3GLQ9BT43 218 aa14.63□□□□□ -0.07
VPS4B-206ENST00000591475 RNF17Q9BXT8 1623 aaKnown RBP14.62□□□□□ -0.07
VPS4B-206ENST00000591475 ZNF326Q5BKZ1 582 aaKnown RBP14.62□□□□□ -0.07
VPS4B-206ENST00000591475 ARHGEF40Q8TER5 1519 aa14.62□□□□□ -0.07
VPS4B-206ENST00000591475 MROH1Q8NDA8 1641 aa14.61□□□□□ -0.07
VPS4B-206ENST00000591475 VWDEQ8N2E2 1590 aa14.61□□□□□ -0.07
VPS4B-206ENST00000591475 AGLP35573 1532 aa14.6□□□□□ -0.07
VPS4B-206ENST00000591475 CNGB1Q14028 1251 aaPredicted RBP14.59□□□□□ -0.07
VPS4B-206ENST00000591475 CCDC136Q96JN2 1154 aa14.59□□□□□ -0.07
VPS4B-206ENST00000591475 E9PCH4 1651 aa14.58□□□□□ -0.07
VPS4B-206ENST00000591475 TMC1Q8TDI8 760 aa14.58□□□□□ -0.08
VPS4B-206ENST00000591475 PNISRQ8TF01 805 aaKnown RBP14.58□□□□□ -0.08
VPS4B-206ENST00000591475 WASHC2CQ9Y4E1 1318 aa14.58□□□□□ -0.08
VPS4B-206ENST00000591475 LMTK2Q8IWU2 1503 aa14.57□□□□□ -0.08
VPS4B-206ENST00000591475 PPP6R1Q9UPN7 881 aa14.57□□□□□ -0.08
VPS4B-206ENST00000591475 KTN1Q86UP2 1357 aaKnown RBP14.57□□□□□ -0.08
VPS4B-206ENST00000591475 NOP58Q9Y2X3 529 aaKnown RBP14.56□□□□□ -0.08
VPS4B-206ENST00000591475 TET3O43151 1660 aa14.56□□□□□ -0.08
VPS4B-206ENST00000591475 CARD11Q9BXL7 1154 aa14.56□□□□□ -0.08
VPS4B-206ENST00000591475 BRD4O60885 1362 aaPredicted RBP14.54□□□□□ -0.08
VPS4B-206ENST00000591475 LRPPRCP42704 1394 aaKnown RBP14.54□□□□□ -0.08
VPS4B-206ENST00000591475 ABCC3O15438 1527 aa14.53□□□□□ -0.08
VPS4B-206ENST00000591475 EFCAB6Q5THR3 1501 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms