RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 DMRTA1Q5VZB9 504 aa6.79□□□□□ -1.32
ZNF540-207ENST00000589285 ARIH1Q9Y4X5 557 aaPredicted RBP6.79□□□□□ -1.32
ZNF540-207ENST00000589285 SNPHO15079 494 aa6.78□□□□□ -1.32
ZNF540-207ENST00000589285 NPDC1Q9NQX5 325 aaPredicted RBP6.78□□□□□ -1.32
ZNF540-207ENST00000589285 FAM198AQ9UFP1 575 aa6.76□□□□□ -1.33
ZNF540-207ENST00000589285 C6orf132Q5T0Z8 1188 aa6.76□□□□□ -1.33
ZNF540-207ENST00000589285 ZDHHC16Q969W1 377 aa6.76□□□□□ -1.33
ZNF540-207ENST00000589285 GPR37O15354 613 aa6.75□□□□□ -1.33
ZNF540-207ENST00000589285 EN1Q05925 392 aaPredicted RBP6.75□□□□□ -1.33
ZNF540-207ENST00000589285 JPH4Q96JJ6 628 aa6.75□□□□□ -1.33
ZNF540-207ENST00000589285 KRTAP3-3Q9BYR6 98 aa6.74□□□□□ -1.33
ZNF540-207ENST00000589285 KRTAP3-2Q9BYR7 98 aa6.74□□□□□ -1.33
ZNF540-207ENST00000589285 SEPT9Q9UHD8 586 aaPredicted RBP6.74□□□□□ -1.33
ZNF540-207ENST00000589285 SPDYE16A6NNV3 312 aaPredicted RBP6.74□□□□□ -1.33
ZNF540-207ENST00000589285 ZC3H15Q8WU90 426 aaKnown RBP6.74□□□□□ -1.33
ZNF540-207ENST00000589285 ANKRD13DQ6ZTN6 518 aa6.74□□□□□ -1.33
ZNF540-207ENST00000589285 GPIHBP1Q8IV16 184 aa6.73□□□□□ -1.33
ZNF540-207ENST00000589285 ZSWIM6Q9HCJ5 1215 aa6.73□□□□□ -1.33
ZNF540-207ENST00000589285 PHF14O94880 888 aa6.72□□□□□ -1.33
ZNF540-207ENST00000589285 PTGER2P43116 358 aa6.72□□□□□ -1.33
ZNF540-207ENST00000589285 PHOX2BQ99453 314 aa6.72□□□□□ -1.33
ZNF540-207ENST00000589285 SLC24A3Q9HC58 644 aa6.72□□□□□ -1.33
ZNF540-207ENST00000589285 TSKSQ9UJT2 592 aa6.72□□□□□ -1.33
ZNF540-207ENST00000589285 PTGDRQ13258 359 aa6.71□□□□□ -1.34
ZNF540-207ENST00000589285 TYW1BQ6NUM6 668 aa6.71□□□□□ -1.34
ZNF540-207ENST00000589285 CCDC180Q9P1Z9 1646 aa6.71□□□□□ -1.34
ZNF540-207ENST00000589285 PPP4R3BQ5MIZ7 849 aa6.71□□□□□ -1.34
ZNF540-207ENST00000589285 PADI6Q6TGC4 694 aa6.71□□□□□ -1.34
ZNF540-207ENST00000589285 BCL2L12Q9HB09 334 aa6.7□□□□□ -1.34
ZNF540-207ENST00000589285 CDCA7LQ96GN5 454 aa6.68□□□□□ -1.34
ZNF540-207ENST00000589285 PTPREP23469 700 aa6.67□□□□□ -1.34
ZNF540-207ENST00000589285 ZNF687Q8N1G0 1237 aa6.67□□□□□ -1.34
ZNF540-207ENST00000589285 GPBP1L1Q9HC44 474 aaPredicted RBP6.67□□□□□ -1.34
ZNF540-207ENST00000589285 ZBED2Q9BTP6 218 aa6.65□□□□□ -1.34
ZNF540-207ENST00000589285 REPIN1Q9BWE0 567 aaKnown RBP6.65□□□□□ -1.34
ZNF540-207ENST00000589285 KIAA1468Q9P260 1216 aa6.65□□□□□ -1.34
ZNF540-207ENST00000589285 LSM11P83369 360 aaKnown RBP eCLIP6.65□□□□□ -1.35
ZNF540-207ENST00000589285 ARHGAP33O14559 1287 aa6.64□□□□□ -1.35
ZNF540-207ENST00000589285 EPAS1Q99814 870 aa6.64□□□□□ -1.35
ZNF540-207ENST00000589285 GNPATO15228 680 aa6.64□□□□□ -1.35
ZNF540-207ENST00000589285 NUDT18Q6ZVK8 323 aa6.64□□□□□ -1.35
ZNF540-207ENST00000589285 KRI1Q8N9T8 703 aaKnown RBP6.64□□□□□ -1.35
ZNF540-207ENST00000589285 FBXW7Q969H0 707 aa6.64□□□□□ -1.35
ZNF540-207ENST00000589285 ZMYND10O75800 440 aa6.63□□□□□ -1.35
ZNF540-207ENST00000589285 CCDC102AQ96A19 550 aa6.63□□□□□ -1.35
ZNF540-207ENST00000589285 SMYD5Q6GMV2 418 aa6.63□□□□□ -1.35
ZNF540-207ENST00000589285 SPNS2Q8IVW8 549 aa6.62□□□□□ -1.35
ZNF540-207ENST00000589285 PPP1R3GB7ZBB8 358 aa6.62□□□□□ -1.35
ZNF540-207ENST00000589285 ADGRD1Q6QNK2 874 aa6.62□□□□□ -1.35
ZNF540-207ENST00000589285 VPS9D1Q9Y2B5 631 aa6.62□□□□□ -1.35
ZNF540-207ENST00000589285 RNF40O75150 1001 aa6.61□□□□□ -1.35
ZNF540-207ENST00000589285 PRSS12P56730 875 aa6.61□□□□□ -1.35
ZNF540-207ENST00000589285 TULP1O00294 542 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-207ENST00000589285 FCHSD2O94868 740 aa6.61□□□□□ -1.35
ZNF540-207ENST00000589285 PNMA3Q9UL41 463 aa6.61□□□□□ -1.35
ZNF540-207ENST00000589285 HIC1Q14526 733 aa6.61□□□□□ -1.35
ZNF540-207ENST00000589285 TRIM6-TRIM34B2RNG4 842 aa6.59□□□□□ -1.35
ZNF540-207ENST00000589285 MMRN1Q13201 1228 aa6.59□□□□□ -1.35
ZNF540-207ENST00000589285 PCDH10Q9P2E7 1040 aa6.59□□□□□ -1.35
ZNF540-207ENST00000589285 IRF6O14896 467 aa6.59□□□□□ -1.36
ZNF540-207ENST00000589285 MDM2Q00987 491 aaPredicted RBP6.59□□□□□ -1.36
ZNF540-207ENST00000589285 BARGINQ6ZT62 677 aa6.59□□□□□ -1.36
ZNF540-207ENST00000589285 METTL3Q86U44 580 aaKnown RBP6.59□□□□□ -1.36
ZNF540-207ENST00000589285 ADGRG1Q9Y653 693 aa6.58□□□□□ -1.36
ZNF540-207ENST00000589285 BCAMP50895 628 aa6.58□□□□□ -1.36
ZNF540-207ENST00000589285 TATDN2Q93075 761 aa6.57□□□□□ -1.36
ZNF540-207ENST00000589285 ONECUT3O60422 494 aaPredicted RBP6.57□□□□□ -1.36
ZNF540-207ENST00000589285 KCTD12Q96CX2 325 aaKnown RBP6.56□□□□□ -1.36
ZNF540-207ENST00000589285 PSDA5PKW4 1024 aaPredicted RBP6.56□□□□□ -1.36
ZNF540-207ENST00000589285 SAMD7Q7Z3H4 446 aa6.56□□□□□ -1.36
ZNF540-207ENST00000589285 RCCD1A6NED2 376 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 HRO43593 1189 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 TTLL12Q14166 644 aaPredicted RBP6.55□□□□□ -1.36
ZNF540-207ENST00000589285 TRIM66O15016 1216 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 PTPN5P54829 565 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 MAP2K5Q13163 448 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 PXYLP1Q8TE99 480 aa6.55□□□□□ -1.36
ZNF540-207ENST00000589285 HLA-CQ95604 372 aa6.54□□□□□ -1.36
ZNF540-207ENST00000589285 PARP9Q8IXQ6 854 aa6.54□□□□□ -1.36
ZNF540-207ENST00000589285 TTC13Q8NBP0 860 aa6.54□□□□□ -1.36
ZNF540-207ENST00000589285 KCNH8Q96L42 1107 aa6.54□□□□□ -1.36
ZNF540-207ENST00000589285 BHMG1C9JSJ3 638 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-207ENST00000589285 ZFRQ96KR1 1074 aaKnown RBP6.54□□□□□ -1.36
ZNF540-207ENST00000589285 EYA1Q99502 592 aa6.54□□□□□ -1.36
ZNF540-207ENST00000589285 SWT1Q5T5J6 900 aaKnown RBP6.53□□□□□ -1.36
ZNF540-207ENST00000589285 BRPF1P55201 1214 aaPredicted RBP6.53□□□□□ -1.36
ZNF540-207ENST00000589285 RABGEF1Q9UJ41 708 aa6.53□□□□□ -1.36
ZNF540-207ENST00000589285 NEUROD2Q15784 382 aa6.52□□□□□ -1.37
ZNF540-207ENST00000589285 MRPL50Q8N5N7 158 aaKnown RBP6.52□□□□□ -1.37
ZNF540-207ENST00000589285 MS4A1P11836 297 aa6.52□□□□□ -1.37
ZNF540-207ENST00000589285 DDX11L8A8MPP1 907 aa6.51□□□□□ -1.37
ZNF540-207ENST00000589285 PDE4DQ08499 809 aa6.51□□□□□ -1.37
ZNF540-207ENST00000589285 FAM117AQ9C073 453 aa6.51□□□□□ -1.37
ZNF540-207ENST00000589285 SLC10A3P09131 477 aa6.5□□□□□ -1.37
ZNF540-207ENST00000589285 PACS2Q86VP3 889 aa6.5□□□□□ -1.37
ZNF540-207ENST00000589285 WBP1LQ9NX94 342 aa6.5□□□□□ -1.37
ZNF540-207ENST00000589285 PBX2P40425 430 aa6.5□□□□□ -1.37
ZNF540-207ENST00000589285 IL27Q8NEV9 243 aa6.5□□□□□ -1.37
ZNF540-207ENST00000589285 PUS10Q3MIT2 529 aaKnown RBP6.5□□□□□ -1.37
ZNF540-207ENST00000589285 GIGYF2Q6Y7W6 1299 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms