RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 A6NJR5 290 aa13.71□□□□□ -0.21
VMP1-208ENST00000588617 CLUAP1Q96AJ1 413 aa13.71□□□□□ -0.21
VMP1-208ENST00000588617 TMEM121BQ9BXQ6 578 aaPredicted RBP13.71□□□□□ -0.21
VMP1-208ENST00000588617 TBC1D12O60347 775 aa13.7□□□□□ -0.22
VMP1-208ENST00000588617 MS4A1P11836 297 aa13.7□□□□□ -0.22
VMP1-208ENST00000588617 LCE2DQ5TA82 110 aaPredicted RBP13.7□□□□□ -0.22
VMP1-208ENST00000588617 PTGDRQ13258 359 aa13.69□□□□□ -0.22
VMP1-208ENST00000588617 OXER1Q8TDS5 423 aa13.69□□□□□ -0.22
VMP1-208ENST00000588617 TRAK2O60296 914 aa13.68□□□□□ -0.22
VMP1-208ENST00000588617 L3MBTL3Q96JM7 780 aaPredicted RBP13.67□□□□□ -0.22
VMP1-208ENST00000588617 PDIA4P13667 645 aaKnown RBP13.66□□□□□ -0.22
VMP1-208ENST00000588617 PRIM1P49642 420 aaKnown RBP13.66□□□□□ -0.22
VMP1-208ENST00000588617 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.66□□□□□ -0.22
VMP1-208ENST00000588617 CCDC82Q8N4S0 544 aa13.65□□□□□ -0.22
VMP1-208ENST00000588617 REPIN1Q9BWE0 567 aaKnown RBP13.65□□□□□ -0.22
VMP1-208ENST00000588617 FAM163AQ96GL9 167 aaPredicted RBP13.64□□□□□ -0.23
VMP1-208ENST00000588617 EVI5O60447 810 aa13.63□□□□□ -0.23
VMP1-208ENST00000588617 POTEMA6NI47 508 aa13.62□□□□□ -0.23
VMP1-208ENST00000588617 SH3D19Q5HYK7 790 aa13.62□□□□□ -0.23
VMP1-208ENST00000588617 C3orf67Q6ZVT6 689 aa13.62□□□□□ -0.23
VMP1-208ENST00000588617 POTEGQ6S5H5 508 aa13.61□□□□□ -0.23
VMP1-208ENST00000588617 MCM6Q14566 821 aa13.6□□□□□ -0.23
VMP1-208ENST00000588617 CLCN1P35523 988 aa13.59□□□□□ -0.23
VMP1-208ENST00000588617 ATP1B4Q9UN42 357 aaPredicted RBP13.59□□□□□ -0.23
VMP1-208ENST00000588617 ZBTB7CA1YPR0 619 aa13.58□□□□□ -0.24
VMP1-208ENST00000588617 NPM2Q86SE8 214 aaKnown RBP13.58□□□□□ -0.24
VMP1-208ENST00000588617 MDM2Q00987 491 aaPredicted RBP13.56□□□□□ -0.24
VMP1-208ENST00000588617 SKIV2LQ15477 1246 aaKnown RBP13.56□□□□□ -0.24
VMP1-208ENST00000588617 GPCPD1Q9NPB8 672 aa13.56□□□□□ -0.24
VMP1-208ENST00000588617 TMEM92Q6UXU6 159 aa13.55□□□□□ -0.24
VMP1-208ENST00000588617 TMUB1Q9BVT8 246 aa13.55□□□□□ -0.24
VMP1-208ENST00000588617 SSTR3P32745 418 aaPredicted RBP13.54□□□□□ -0.24
VMP1-208ENST00000588617 ZNF777Q9ULD5 760 aaPredicted RBP13.54□□□□□ -0.24
VMP1-208ENST00000588617 PROSER2Q86WR7 435 aaPredicted RBP13.53□□□□□ -0.24
VMP1-208ENST00000588617 CDHR5Q9HBB8 845 aa13.53□□□□□ -0.24
VMP1-208ENST00000588617 RAD21O60216 631 aa13.51□□□□□ -0.25
VMP1-208ENST00000588617 NPDC1Q9NQX5 325 aaPredicted RBP13.51□□□□□ -0.25
VMP1-208ENST00000588617 ST18O60284 1047 aa13.5□□□□□ -0.25
VMP1-208ENST00000588617 MAP3K7O43318 606 aa13.49□□□□□ -0.25
VMP1-208ENST00000588617 EN1Q05925 392 aaPredicted RBP13.49□□□□□ -0.25
VMP1-208ENST00000588617 PROCA1Q8NCQ7 364 aaPredicted RBP13.49□□□□□ -0.25
VMP1-208ENST00000588617 BEGAINQ9BUH8 593 aa13.49□□□□□ -0.25
VMP1-208ENST00000588617 PHOX2BQ99453 314 aa13.48□□□□□ -0.25
VMP1-208ENST00000588617 POLR3EQ9NVU0 708 aa13.48□□□□□ -0.25
VMP1-208ENST00000588617 POM121Q96HA1 1249 aa13.47□□□□□ -0.25
VMP1-208ENST00000588617 EPAS1Q99814 870 aa13.47□□□□□ -0.25
VMP1-208ENST00000588617 ANO8Q9HCE9 1232 aaPredicted RBP13.47□□□□□ -0.25
VMP1-208ENST00000588617 PTCD2Q8WV60 388 aaKnown RBP13.46□□□□□ -0.25
VMP1-208ENST00000588617 RBM33Q96EV2 1170 aaKnown RBP13.46□□□□□ -0.25
VMP1-208ENST00000588617 CCDC97Q96F63 343 aaPredicted RBP13.46□□□□□ -0.25
VMP1-208ENST00000588617 SNPHO15079 494 aa13.45□□□□□ -0.26
VMP1-208ENST00000588617 PHF14O94880 888 aa13.45□□□□□ -0.26
VMP1-208ENST00000588617 CCDC9Q9Y3X0 531 aaKnown RBP13.45□□□□□ -0.26
VMP1-208ENST00000588617 FNBP4Q8N3X1 1017 aaPredicted RBP13.44□□□□□ -0.26
VMP1-208ENST00000588617 NECTIN2Q92692 538 aa13.44□□□□□ -0.26
VMP1-208ENST00000588617 SERPINA10Q9UK55 444 aa13.44□□□□□ -0.26
VMP1-208ENST00000588617 FAM217BQ9NTX9 383 aaPredicted RBP13.42□□□□□ -0.26
VMP1-208ENST00000588617 SPDYE5A6NIY4 337 aa13.39□□□□□ -0.27
VMP1-208ENST00000588617 TSR1Q2NL82 804 aaKnown RBP13.39□□□□□ -0.27
VMP1-208ENST00000588617 FAM161AQ3B820 660 aa13.39□□□□□ -0.27
VMP1-208ENST00000588617 OATP04181 439 aa13.38□□□□□ -0.27
VMP1-208ENST00000588617 MYSM1Q5VVJ2 828 aa13.38□□□□□ -0.27
VMP1-208ENST00000588617 NLRP7Q8WX94 980 aa13.38□□□□□ -0.27
VMP1-208ENST00000588617 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.38□□□□□ -0.273e-6■■□□□ 12.1
VMP1-208ENST00000588617 METTL3Q86U44 580 aaKnown RBP13.37□□□□□ -0.27
VMP1-208ENST00000588617 PCDHGA10Q9Y5H3 936 aa13.37□□□□□ -0.27
VMP1-208ENST00000588617 TYW1BQ6NUM6 668 aa13.36□□□□□ -0.27
VMP1-208ENST00000588617 COG6Q9Y2V7 657 aa13.36□□□□□ -0.27
VMP1-208ENST00000588617 CLK2P49760 499 aaKnown RBP13.35□□□□□ -0.27
VMP1-208ENST00000588617 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
VMP1-208ENST00000588617 PCDH10Q9P2E7 1040 aa13.35□□□□□ -0.27
VMP1-208ENST00000588617 SLC34A2O95436 690 aa13.34□□□□□ -0.27
VMP1-208ENST00000588617 HOXB3P14651 431 aaPredicted RBP13.34□□□□□ -0.27
VMP1-208ENST00000588617 BANK1Q8NDB2 785 aa13.33□□□□□ -0.28
VMP1-208ENST00000588617 SNRKQ9NRH2 765 aa13.33□□□□□ -0.28
VMP1-208ENST00000588617 MARVELD3Q96A59 401 aa13.32□□□□□ -0.28
VMP1-208ENST00000588617 ZNF330Q9Y3S2 320 aaPredicted RBP13.32□□□□□ -0.28
VMP1-208ENST00000588617 RFC5P40937 340 aa13.31□□□□□ -0.28
VMP1-208ENST00000588617 PXYLP1Q8TE99 480 aa13.31□□□□□ -0.28
VMP1-208ENST00000588617 TBC1D2Q9BYX2 928 aa13.31□□□□□ -0.28
VMP1-208ENST00000588617 PADI6Q6TGC4 694 aa13.3□□□□□ -0.28
VMP1-208ENST00000588617 FBXW7Q969H0 707 aa13.3□□□□□ -0.28
VMP1-208ENST00000588617 PLSCR2Q9NRY7 297 aa13.3□□□□□ -0.28
VMP1-208ENST00000588617 ADGRG1Q9Y653 693 aa13.3□□□□□ -0.28
VMP1-208ENST00000588617 DIXDC1Q155Q3 683 aa13.29□□□□□ -0.28
VMP1-208ENST00000588617 KCTD17Q8N5Z5 321 aa13.29□□□□□ -0.28
VMP1-208ENST00000588617 CERKQ8TCT0 537 aa13.28□□□□□ -0.28
VMP1-208ENST00000588617 TMEM259Q4ZIN3 620 aa13.27□□□□□ -0.29
VMP1-208ENST00000588617 AEBP1Q8IUX7 1158 aa13.27□□□□□ -0.29
VMP1-208ENST00000588617 CDAN1Q8IWY9 1227 aa13.26□□□□□ -0.29
VMP1-208ENST00000588617 JPH4Q96JJ6 628 aa13.24□□□□□ -0.29
VMP1-208ENST00000588617 EMP3P54852 163 aa13.23□□□□□ -0.29
VMP1-208ENST00000588617 DOK7Q18PE1 504 aa13.23□□□□□ -0.29
VMP1-208ENST00000588617 C6orf132Q5T0Z8 1188 aa13.23□□□□□ -0.29
VMP1-208ENST00000588617 LIMD1Q9UGP4 676 aa13.23□□□□□ -0.29
VMP1-208ENST00000588617 PCDHGA4Q9Y5G9 962 aa13.23□□□□□ -0.29
VMP1-208ENST00000588617 WWC1Q8IX03 1113 aa13.22□□□□□ -0.29
VMP1-208ENST00000588617 FBXO31Q5XUX0 539 aaPredicted RBP13.21□□□□□ -0.29
VMP1-208ENST00000588617 PPP2R2DQ66LE6 453 aa13.21□□□□□ -0.29
VMP1-208ENST00000588617 RIC3Q7Z5B4 369 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms