RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 DNMT1P26358 1616 aaKnown RBP18.96■□□□□ 0.63
LIG3-209ENST00000586435 PZPP20742 1482 aa18.96■□□□□ 0.63
LIG3-209ENST00000586435 MAP3K1Q13233 1512 aa18.95■□□□□ 0.62
LIG3-209ENST00000586435 MAST1Q9Y2H9 1570 aa18.94■□□□□ 0.62
LIG3-209ENST00000586435 NCKAP5LQ9HCH0 1330 aa18.94■□□□□ 0.62
LIG3-209ENST00000586435 POLR1AO95602 1720 aaPredicted RBP18.94■□□□□ 0.62
LIG3-209ENST00000586435 KIF3BO15066 747 aa18.92■□□□□ 0.62
LIG3-209ENST00000586435 RNF17Q9BXT8 1623 aaKnown RBP18.92■□□□□ 0.62
LIG3-209ENST00000586435 EIF2AK4Q9P2K8 1649 aaKnown RBP18.9■□□□□ 0.62
LIG3-209ENST00000586435 ZC3H13Q5T200 1668 aaKnown RBP18.9■□□□□ 0.62
LIG3-209ENST00000586435 TNRQ92752 1358 aa18.9■□□□□ 0.62
LIG3-209ENST00000586435 ZNF335Q9H4Z2 1342 aaPredicted RBP18.89■□□□□ 0.61
LIG3-209ENST00000586435 TSPY4P0CV99 314 aa18.88■□□□□ 0.61
LIG3-209ENST00000586435 TSPY10P0CW01 314 aa18.88■□□□□ 0.61
LIG3-209ENST00000586435 NEURL4Q96JN8 1562 aa18.88■□□□□ 0.61
LIG3-209ENST00000586435 MIA2Q96PC5 1412 aa18.87■□□□□ 0.61
LIG3-209ENST00000586435 NLRP1Q9C000 1473 aa18.86■□□□□ 0.61
LIG3-209ENST00000586435 WASHC2CQ9Y4E1 1318 aa18.86■□□□□ 0.61
LIG3-209ENST00000586435 MYOM3Q5VTT5 1437 aa18.85■□□□□ 0.61
LIG3-209ENST00000586435 FBXO31Q5XUX0 539 aaPredicted RBP18.84■□□□□ 0.61
LIG3-209ENST00000586435 SPATA31D1Q6ZQQ2 1576 aa18.84■□□□□ 0.61
LIG3-209ENST00000586435 ABCC3O15438 1527 aa18.84■□□□□ 0.61
LIG3-209ENST00000586435 MROH1Q8NDA8 1641 aa18.83■□□□□ 0.61
LIG3-209ENST00000586435 DISP3Q9P2K9 1392 aa18.82■□□□□ 0.6
LIG3-209ENST00000586435 DEPDC5O75140 1603 aa18.82■□□□□ 0.6
LIG3-209ENST00000586435 UGGT1Q9NYU2 1555 aa18.82■□□□□ 0.6
LIG3-209ENST00000586435 CPS1P31327 1500 aa18.81■□□□□ 0.6
LIG3-209ENST00000586435 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
LIG3-209ENST00000586435 CROCC2H7BZ55 1655 aa18.81■□□□□ 0.6
LIG3-209ENST00000586435 KANK4Q5T7N3 995 aaPredicted RBP18.8■□□□□ 0.6
LIG3-209ENST00000586435 DUOX2Q9NRD8 1548 aa18.79■□□□□ 0.6
LIG3-209ENST00000586435 MED14O60244 1454 aa18.79■□□□□ 0.6
LIG3-209ENST00000586435 CEP152O94986 1710 aa18.79■□□□□ 0.6
LIG3-209ENST00000586435 SHANK2Q9UPX8 1470 aa18.78■□□□□ 0.6
LIG3-209ENST00000586435 THEMISQ8N1K5 641 aaPredicted RBP18.77■□□□□ 0.6
LIG3-209ENST00000586435 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.77■□□□□ 0.6
LIG3-209ENST00000586435 ERVK-7P63135 1459 aa18.77■□□□□ 0.59
LIG3-209ENST00000586435 UBAP1LF5GYI3 381 aa18.76■□□□□ 0.59
LIG3-209ENST00000586435 ANKLE2Q86XL3 938 aa18.76■□□□□ 0.59
LIG3-209ENST00000586435 VWDEQ8N2E2 1590 aa18.76■□□□□ 0.59
LIG3-209ENST00000586435 IQGAP1P46940 1657 aa18.76■□□□□ 0.59
LIG3-209ENST00000586435 PRDM15P57071 1507 aaPredicted RBP18.75■□□□□ 0.59
LIG3-209ENST00000586435 PTPN23Q9H3S7 1636 aa18.74■□□□□ 0.59
LIG3-209ENST00000586435 NPHP4O75161 1426 aaPredicted RBP18.74■□□□□ 0.59
LIG3-209ENST00000586435 UBR1Q8IWV7 1749 aa18.73■□□□□ 0.59
LIG3-209ENST00000586435 ERBINQ96RT1 1412 aa18.73■□□□□ 0.59
LIG3-209ENST00000586435 CFAP65Q6ZU64 1925 aaKnown RBP18.72■□□□□ 0.59
LIG3-209ENST00000586435 ILDR2Q71H61 639 aa18.71■□□□□ 0.59
LIG3-209ENST00000586435 ABCC5O15440 1437 aa18.71■□□□□ 0.59
LIG3-209ENST00000586435 KIF15Q9NS87 1388 aa18.7■□□□□ 0.58
LIG3-209ENST00000586435 ARHGAP31Q2M1Z3 1444 aa18.7■□□□□ 0.58
LIG3-209ENST00000586435 DAPK1P53355 1430 aa18.68■□□□□ 0.58
LIG3-209ENST00000586435 SYNMO15061 1565 aa18.68■□□□□ 0.58
LIG3-209ENST00000586435 FGD6Q6ZV73 1430 aa18.67■□□□□ 0.58
LIG3-209ENST00000586435 STRCP1A6NGW2 1772 aa18.67■□□□□ 0.58
LIG3-209ENST00000586435 ARHGAP23Q9P227 1491 aa18.65■□□□□ 0.58
LIG3-209ENST00000586435 SLIT1O75093 1534 aa18.65■□□□□ 0.58
LIG3-209ENST00000586435 SOCS7O14512 581 aa18.65■□□□□ 0.58
LIG3-209ENST00000586435 TOM1O60784 492 aa18.65■□□□□ 0.58
LIG3-209ENST00000586435 APLP2Q06481 763 aa18.65■□□□□ 0.58
LIG3-209ENST00000586435 ALKQ9UM73 1620 aa18.64■□□□□ 0.57
LIG3-209ENST00000586435 SCAF11Q99590 1463 aaKnown RBP18.64■□□□□ 0.57
LIG3-209ENST00000586435 KDM5AP29375 1690 aaKnown RBP18.63■□□□□ 0.57
LIG3-209ENST00000586435 LMTK2Q8IWU2 1503 aa18.63■□□□□ 0.57
LIG3-209ENST00000586435 PIK3C2BO00750 1634 aa18.61■□□□□ 0.57
LIG3-209ENST00000586435 LRRC7Q96NW7 1537 aa18.61■□□□□ 0.57
LIG3-209ENST00000586435 ANKRD30AQ9BXX3 1397 aa18.6■□□□□ 0.57
LIG3-209ENST00000586435 RRP7BPQ9NSQ0 103 aa18.6■□□□□ 0.57
LIG3-209ENST00000586435 KANK1Q14678 1352 aa18.59■□□□□ 0.57
LIG3-209ENST00000586435 ADGRL2O95490 1459 aa18.58■□□□□ 0.57
LIG3-209ENST00000586435 HSPA1LP34931 641 aa18.58■□□□□ 0.56
LIG3-209ENST00000586435 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
LIG3-209ENST00000586435 MED1Q15648 1581 aaPredicted RBP18.57■□□□□ 0.56
LIG3-209ENST00000586435 PIP4K2BP78356 416 aa18.57■□□□□ 0.56
LIG3-209ENST00000586435 EFCAB6Q5THR3 1501 aa18.56■□□□□ 0.56
LIG3-209ENST00000586435 XIRP1Q702N8 1843 aaKnown RBP18.54■□□□□ 0.56
LIG3-209ENST00000586435 LTKP29376 864 aa18.54■□□□□ 0.56
LIG3-209ENST00000586435 TMEM2Q9UHN6 1383 aa18.54■□□□□ 0.56
LIG3-209ENST00000586435 TXNDC2Q86VQ3 553 aa18.53■□□□□ 0.56
LIG3-209ENST00000586435 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
LIG3-209ENST00000586435 NOS1P29475 1434 aa18.52■□□□□ 0.56
LIG3-209ENST00000586435 EID1Q9Y6B2 187 aa18.51■□□□□ 0.55
LIG3-209ENST00000586435 ADGRB3O60242 1522 aa18.5■□□□□ 0.55
LIG3-209ENST00000586435 CHIC2Q9UKJ5 165 aa18.5■□□□□ 0.55
LIG3-209ENST00000586435 RPRD2Q5VT52 1461 aaKnown RBP18.5■□□□□ 0.55
LIG3-209ENST00000586435 TET3O43151 1660 aa18.47■□□□□ 0.55
LIG3-209ENST00000586435 IDI1Q13907 227 aa18.47■□□□□ 0.55
LIG3-209ENST00000586435 ANKRD50Q9ULJ7 1429 aa18.47■□□□□ 0.55
LIG3-209ENST00000586435 STAG3Q9UJ98 1225 aa18.46■□□□□ 0.55
LIG3-209ENST00000586435 GCC2Q8IWJ2 1684 aa18.46■□□□□ 0.55
LIG3-209ENST00000586435 UNC13BO14795 1591 aa18.45■□□□□ 0.54
LIG3-209ENST00000586435 NWD1Q149M9 1564 aa18.44■□□□□ 0.54
LIG3-209ENST00000586435 SLC52A1Q9NWF4 448 aa18.43■□□□□ 0.54
LIG3-209ENST00000586435 MYO5BQ9ULV0 1848 aa18.43■□□□□ 0.54
LIG3-209ENST00000586435 FAM50AQ14320 339 aaKnown RBP18.42■□□□□ 0.54
LIG3-209ENST00000586435 NKTRP30414 1462 aaKnown RBP18.41■□□□□ 0.54
LIG3-209ENST00000586435 TMEM131LA2VDJ0 1609 aa18.39■□□□□ 0.53
LIG3-209ENST00000586435 KCNA6P17658 529 aa18.39■□□□□ 0.53
LIG3-209ENST00000586435 ZFYVE9O95405 1425 aa18.39■□□□□ 0.53
LIG3-209ENST00000586435 TMEM94Q12767 1356 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms