RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 AGLP35573 1532 aa23.94■■□□□ 1.42
SS18-226ENST00000585241 RNF17Q9BXT8 1623 aaKnown RBP23.94■■□□□ 1.42
SS18-226ENST00000585241 MROH1Q8NDA8 1641 aa23.92■■□□□ 1.42
SS18-226ENST00000585241 PRDM15P57071 1507 aaPredicted RBP23.91■■□□□ 1.42
SS18-226ENST00000585241 PZPP20742 1482 aa23.9■■□□□ 1.42
SS18-226ENST00000585241 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.41
SS18-226ENST00000585241 IQGAP3Q86VI3 1631 aa23.88■■□□□ 1.41
SS18-226ENST00000585241 KIF3BO15066 747 aa23.87■■□□□ 1.41
SS18-226ENST00000585241 TRIM52Q96A61 297 aa23.87■■□□□ 1.41
SS18-226ENST00000585241 NUP155O75694 1391 aa23.87■■□□□ 1.41
SS18-226ENST00000585241 SIGLEC1Q9BZZ2 1709 aa23.86■■□□□ 1.41
SS18-226ENST00000585241 FAM135AQ9P2D6 1515 aa23.84■■□□□ 1.41
SS18-226ENST00000585241 MPHOSPH9Q99550 1183 aa23.82■■□□□ 1.4
SS18-226ENST00000585241 CLSPNQ9HAW4 1339 aa23.82■■□□□ 1.4
SS18-226ENST00000585241 LMTK2Q8IWU2 1503 aa23.81■■□□□ 1.4
SS18-226ENST00000585241 KANK1Q14678 1352 aa23.79■■□□□ 1.4
SS18-226ENST00000585241 CCER1Q8TC90 406 aaPredicted RBP23.79■■□□□ 1.4
SS18-226ENST00000585241 SLC4A1APQ9BWU0 796 aaKnown RBP23.77■■□□□ 1.4
SS18-226ENST00000585241 TET3O43151 1660 aa23.76■■□□□ 1.39
SS18-226ENST00000585241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.76■■□□□ 1.394e-7■□□□□ 9.3
SS18-226ENST00000585241 ZC3H13Q5T200 1668 aaKnown RBP23.75■■□□□ 1.39
SS18-226ENST00000585241 ABCC3O15438 1527 aa23.74■■□□□ 1.39
SS18-226ENST00000585241 PPP6R1Q9UPN7 881 aa23.74■■□□□ 1.39
SS18-226ENST00000585241 GGT6Q6P531 493 aa23.72■■□□□ 1.39
SS18-226ENST00000585241 CEP152O94986 1710 aa23.71■■□□□ 1.39
SS18-226ENST00000585241 EFCAB6Q5THR3 1501 aa23.71■■□□□ 1.39
SS18-226ENST00000585241 PKD2Q13563 968 aa23.7■■□□□ 1.38
SS18-226ENST00000585241 ANKRD30BQ9BXX2 1392 aa23.67■■□□□ 1.38
SS18-226ENST00000585241 E9PCH4 1651 aa23.67■■□□□ 1.38
SS18-226ENST00000585241 CAMSAP1Q5T5Y3 1602 aa23.66■■□□□ 1.38
SS18-226ENST00000585241 RPRD2Q5VT52 1461 aaKnown RBP23.66■■□□□ 1.38
SS18-226ENST00000585241 ARHGAP31Q2M1Z3 1444 aa23.66■■□□□ 1.38
SS18-226ENST00000585241 WASHC2CQ9Y4E1 1318 aa23.64■■□□□ 1.38
SS18-226ENST00000585241 ARID4BQ4LE39 1312 aaPredicted RBP23.62■■□□□ 1.37
SS18-226ENST00000585241 NPATQ14207 1427 aa23.62■■□□□ 1.37
SS18-226ENST00000585241 FOXD1Q16676 465 aa23.62■■□□□ 1.37
SS18-226ENST00000585241 PTPRTO14522 1441 aa23.61■■□□□ 1.37
SS18-226ENST00000585241 PLA2R1Q13018 1463 aa23.61■■□□□ 1.37
SS18-226ENST00000585241 CNTLNQ9NXG0 1405 aa23.6■■□□□ 1.37
SS18-226ENST00000585241 CLTCQ00610 1675 aaKnown RBP23.59■■□□□ 1.37
SS18-226ENST00000585241 TRPM2O94759 1503 aa23.58■■□□□ 1.36
SS18-226ENST00000585241 MROH2AA6NES4 1674 aa23.57■■□□□ 1.36
SS18-226ENST00000585241 SPHKAPQ2M3C7 1700 aa23.57■■□□□ 1.36
SS18-226ENST00000585241 MLECQ14165 292 aa23.57■■□□□ 1.36
SS18-226ENST00000585241 NOS1P29475 1434 aa23.55■■□□□ 1.36
SS18-226ENST00000585241 ZEB1P37275 1124 aaPredicted RBP23.53■■□□□ 1.36
SS18-226ENST00000585241 ADAMTSL3P82987 1691 aa23.53■■□□□ 1.36
SS18-226ENST00000585241 FER1L4A9Z1Z3 1794 aa23.52■■□□□ 1.36
SS18-226ENST00000585241 SIN3AQ96ST3 1273 aa23.52■■□□□ 1.36
SS18-226ENST00000585241 PREX1Q8TCU6 1659 aa23.5■■□□□ 1.35
SS18-226ENST00000585241 CCDC144AA2RUR9 1427 aa23.5■■□□□ 1.35
SS18-226ENST00000585241 ZMYM3Q14202 1370 aa23.49■■□□□ 1.35
SS18-226ENST00000585241 ERVK-7P63135 1459 aa23.49■■□□□ 1.35
SS18-226ENST00000585241 SPATA31D1Q6ZQQ2 1576 aa23.48■■□□□ 1.35
SS18-226ENST00000585241 ESF1Q9H501 851 aaKnown RBP23.48■■□□□ 1.35
SS18-226ENST00000585241 TIMELESSQ9UNS1 1208 aa23.47■■□□□ 1.35
SS18-226ENST00000585241 SYNMO15061 1565 aa23.47■■□□□ 1.35
SS18-226ENST00000585241 MADDQ8WXG6 1647 aa23.47■■□□□ 1.35
SS18-226ENST00000585241 CLTCL1P53675 1640 aa23.46■■□□□ 1.35
SS18-226ENST00000585241 PIK3C2BO00750 1634 aa23.45■■□□□ 1.34
SS18-226ENST00000585241 NEURL4Q96JN8 1562 aa23.44■■□□□ 1.34
SS18-226ENST00000585241 NEUROD1Q13562 356 aa23.42■■□□□ 1.34
SS18-226ENST00000585241 C3P01024 1663 aa23.41■■□□□ 1.34
SS18-226ENST00000585241 CFAP65Q6ZU64 1925 aaKnown RBP23.41■■□□□ 1.34
SS18-226ENST00000585241 UGGT1Q9NYU2 1555 aa23.4■■□□□ 1.34
SS18-226ENST00000585241 RIMS1Q86UR5 1692 aaKnown RBP23.4■■□□□ 1.34
SS18-226ENST00000585241 SPATA31E1Q6ZUB1 1445 aa23.39■■□□□ 1.33
SS18-226ENST00000585241 TONSLQ96HA7 1378 aa23.39■■□□□ 1.33
SS18-226ENST00000585241 FBXO31Q5XUX0 539 aaPredicted RBP23.38■■□□□ 1.33
SS18-226ENST00000585241 SLC52A1Q9NWF4 448 aa23.37■■□□□ 1.33
SS18-226ENST00000585241 ADGRB3O60242 1522 aa23.35■■□□□ 1.33
SS18-226ENST00000585241 KIF1BO60333 1816 aa23.33■■□□□ 1.33
SS18-226ENST00000585241 TNRQ92752 1358 aa23.33■■□□□ 1.33
SS18-226ENST00000585241 IDI1Q13907 227 aa23.3■■□□□ 1.32
SS18-226ENST00000585241 L3MBTL2Q969R5 705 aa23.3■■□□□ 1.32
SS18-226ENST00000585241 CEBPAP49715 358 aaPredicted RBP23.29■■□□□ 1.32
SS18-226ENST00000585241 PTPRMP28827 1452 aa23.29■■□□□ 1.32
SS18-226ENST00000585241 TMEM131LA2VDJ0 1609 aa23.28■■□□□ 1.32
SS18-226ENST00000585241 NLRP1Q9C000 1473 aa23.28■■□□□ 1.32
SS18-226ENST00000585241 PPP1R15AO75807 674 aaPredicted RBP23.27■■□□□ 1.32
SS18-226ENST00000585241 KDM5AP29375 1690 aaKnown RBP23.27■■□□□ 1.32
SS18-226ENST00000585241 IFT172Q9UG01 1749 aa23.23■■□□□ 1.31
SS18-226ENST00000585241 UHRF1BP1Q6BDS2 1440 aa23.23■■□□□ 1.31
SS18-226ENST00000585241 MYO3AQ8NEV4 1616 aa23.22■■□□□ 1.31
SS18-226ENST00000585241 STAC3Q96MF2 364 aa23.22■■□□□ 1.31
SS18-226ENST00000585241 A2ML1A8K2U0 1454 aa23.22■■□□□ 1.31
SS18-226ENST00000585241 MYOM2P54296 1465 aa23.2■■□□□ 1.3
SS18-226ENST00000585241 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.3
SS18-226ENST00000585241 RGL3Q3MIN7 710 aa23.2■■□□□ 1.3
SS18-226ENST00000585241 SETD1BQ9UPS6 1966 aaKnown RBP23.2■■□□□ 1.3
SS18-226ENST00000585241 KDM4FA0A1W2PPD8 638 aa23.19■■□□□ 1.3
SS18-226ENST00000585241 MYO5BQ9ULV0 1848 aa23.19■■□□□ 1.3
SS18-226ENST00000585241 UBR1Q8IWV7 1749 aa23.19■■□□□ 1.3
SS18-226ENST00000585241 NEXMIFQ5QGS0 1516 aa23.18■■□□□ 1.3
SS18-226ENST00000585241 PPLO60437 1756 aa23.18■■□□□ 1.3
SS18-226ENST00000585241 DCAF11Q8TEB1 546 aa23.17■■□□□ 1.3
SS18-226ENST00000585241 ZNF142P52746 1687 aaPredicted RBP23.16■■□□□ 1.3
SS18-226ENST00000585241 CHGAP10645 457 aaKnown RBP23.16■■□□□ 1.3
SS18-226ENST00000585241 NRXN1Q9ULB1 1477 aa23.16■■□□□ 1.3
SS18-226ENST00000585241 PRAG1Q86YV5 1406 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms