RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 INO80Q9ULG1 1556 aaPredicted RBP14.89□□□□□ -0.03
SMCHD1-212ENST00000585229 RICTORQ6R327 1708 aa14.89□□□□□ -0.03
SMCHD1-212ENST00000585229 C9orf84Q5VXU9 1444 aa14.88□□□□□ -0.03
SMCHD1-212ENST00000585229 POGZQ7Z3K3 1410 aa14.88□□□□□ -0.03
SMCHD1-212ENST00000585229 SCAPERQ9BY12 1400 aa14.88□□□□□ -0.03
SMCHD1-212ENST00000585229 HNRNPMP52272 730 aaKnown RBP eCLIP14.87□□□□□ -0.03
SMCHD1-212ENST00000585229 ZNF518AQ6AHZ1 1483 aa14.87□□□□□ -0.03
SMCHD1-212ENST00000585229 ZFYVE16Q7Z3T8 1539 aa14.87□□□□□ -0.03
SMCHD1-212ENST00000585229 FRMPD1Q5SYB0 1578 aa14.86□□□□□ -0.03
SMCHD1-212ENST00000585229 RTEL1-TNFRSF6BF6WH68 1400 aa14.86□□□□□ -0.03
SMCHD1-212ENST00000585229 NAIPQ13075 1403 aa14.85□□□□□ -0.03
SMCHD1-212ENST00000585229 NCOA1Q15788 1441 aa14.85□□□□□ -0.03
SMCHD1-212ENST00000585229 DENND4BO75064 1496 aaPredicted RBP14.85□□□□□ -0.03
SMCHD1-212ENST00000585229 PITPNM1O00562 1244 aa14.85□□□□□ -0.03
SMCHD1-212ENST00000585229 ZMYM4Q5VZL5 1548 aa14.84□□□□□ -0.03
SMCHD1-212ENST00000585229 ITGAEP38570 1179 aa14.84□□□□□ -0.03
SMCHD1-212ENST00000585229 SETD5Q9C0A6 1442 aa14.83□□□□□ -0.03
SMCHD1-212ENST00000585229 KIDINS220Q9ULH0 1771 aa14.83□□□□□ -0.03
SMCHD1-212ENST00000585229 ATP7AQ04656 1500 aa14.83□□□□□ -0.04
SMCHD1-212ENST00000585229 HECW2Q9P2P5 1572 aa14.83□□□□□ -0.04
SMCHD1-212ENST00000585229 ANKRD30AQ9BXX3 1397 aa14.83□□□□□ -0.04
SMCHD1-212ENST00000585229 MLH3Q9UHC1 1453 aa14.82□□□□□ -0.04
SMCHD1-212ENST00000585229 TSPY4P0CV99 314 aa14.82□□□□□ -0.04
SMCHD1-212ENST00000585229 TSPY10P0CW01 314 aa14.82□□□□□ -0.04
SMCHD1-212ENST00000585229 HRCP23327 699 aa14.8□□□□□ -0.04
SMCHD1-212ENST00000585229 SPDYE1Q8NFV5 336 aaPredicted RBP14.8□□□□□ -0.04
SMCHD1-212ENST00000585229 KDM6BO15054 1643 aa14.79□□□□□ -0.04
SMCHD1-212ENST00000585229 RAB3GAP2Q9H2M9 1393 aa14.79□□□□□ -0.04
SMCHD1-212ENST00000585229 DUOX2Q9NRD8 1548 aa14.78□□□□□ -0.04
SMCHD1-212ENST00000585229 AFAP1Q8N556 730 aa14.78□□□□□ -0.04
SMCHD1-212ENST00000585229 CHIC2Q9UKJ5 165 aa14.78□□□□□ -0.04
SMCHD1-212ENST00000585229 COL17A1Q9UMD9 1497 aaPredicted RBP14.77□□□□□ -0.04
SMCHD1-212ENST00000585229 KIF15Q9NS87 1388 aa14.77□□□□□ -0.04
SMCHD1-212ENST00000585229 SPAG9O60271 1321 aaKnown RBP14.77□□□□□ -0.04
SMCHD1-212ENST00000585229 ABCA6Q8N139 1617 aa14.77□□□□□ -0.05
SMCHD1-212ENST00000585229 MAGI2Q86UL8 1455 aa14.76□□□□□ -0.05
SMCHD1-212ENST00000585229 EIF2AK4Q9P2K8 1649 aaKnown RBP14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 RRP7BPQ9NSQ0 103 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 CLEC11AQ9Y240 323 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 DIP2CQ9Y2E4 1556 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 BCORL1Q5H9F3 1711 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 ERBINQ96RT1 1412 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 ANKRD50Q9ULJ7 1429 aa14.75□□□□□ -0.05
SMCHD1-212ENST00000585229 REREQ9P2R6 1566 aa14.73□□□□□ -0.05
SMCHD1-212ENST00000585229 ACIN1Q9UKV3 1341 aaKnown RBP14.73□□□□□ -0.05
SMCHD1-212ENST00000585229 UNC13BO14795 1591 aa14.73□□□□□ -0.05
SMCHD1-212ENST00000585229 ARHGEF40Q8TER5 1519 aa14.72□□□□□ -0.05
SMCHD1-212ENST00000585229 RAPGEF3O95398 923 aa14.72□□□□□ -0.05
SMCHD1-212ENST00000585229 KDM5DQ9BY66 1539 aa14.71□□□□□ -0.05
SMCHD1-212ENST00000585229 DEPDC5O75140 1603 aa14.71□□□□□ -0.05
SMCHD1-212ENST00000585229 DHX29Q7Z478 1369 aaKnown RBP14.7□□□□□ -0.06
SMCHD1-212ENST00000585229 A2MP01023 1474 aa14.69□□□□□ -0.06
SMCHD1-212ENST00000585229 CHRDL2Q6WN34 429 aa14.69□□□□□ -0.06
SMCHD1-212ENST00000585229 STAG3Q9UJ98 1225 aa14.69□□□□□ -0.06
SMCHD1-212ENST00000585229 RNF17Q9BXT8 1623 aaKnown RBP14.69□□□□□ -0.06
SMCHD1-212ENST00000585229 YEATS2Q9ULM3 1422 aa14.68□□□□□ -0.06
SMCHD1-212ENST00000585229 DHX57Q6P158 1386 aaKnown RBP14.66□□□□□ -0.06
SMCHD1-212ENST00000585229 MROH1Q8NDA8 1641 aa14.66□□□□□ -0.06
SMCHD1-212ENST00000585229 AGLP35573 1532 aa14.66□□□□□ -0.06
SMCHD1-212ENST00000585229 ATP10AO60312 1499 aa14.65□□□□□ -0.06
SMCHD1-212ENST00000585229 IQGAP3Q86VI3 1631 aa14.65□□□□□ -0.06
SMCHD1-212ENST00000585229 PRDM15P57071 1507 aaPredicted RBP14.65□□□□□ -0.06
SMCHD1-212ENST00000585229 VWDEQ8N2E2 1590 aa14.64□□□□□ -0.07
SMCHD1-212ENST00000585229 PZPP20742 1482 aa14.63□□□□□ -0.07
SMCHD1-212ENST00000585229 FBXO3Q9UK99 471 aa14.63□□□□□ -0.07
SMCHD1-212ENST00000585229 SIGLEC1Q9BZZ2 1709 aa14.62□□□□□ -0.07
SMCHD1-212ENST00000585229 PRR29P0C7W0 189 aa14.6□□□□□ -0.07
SMCHD1-212ENST00000585229 FAM135AQ9P2D6 1515 aa14.6□□□□□ -0.07
SMCHD1-212ENST00000585229 MYT1LQ9UL68 1186 aa14.59□□□□□ -0.07
SMCHD1-212ENST00000585229 LMTK2Q8IWU2 1503 aa14.59□□□□□ -0.07
SMCHD1-212ENST00000585229 CLSPNQ9HAW4 1339 aa14.59□□□□□ -0.07
SMCHD1-212ENST00000585229 ZC3H13Q5T200 1668 aaKnown RBP14.58□□□□□ -0.08
SMCHD1-212ENST00000585229 FXR2P51116 673 aaKnown RBP eCLIP14.57□□□□□ -0.08
SMCHD1-212ENST00000585229 TET3O43151 1660 aa14.57□□□□□ -0.08
SMCHD1-212ENST00000585229 NUP155O75694 1391 aa14.56□□□□□ -0.08
SMCHD1-212ENST00000585229 CEP152O94986 1710 aa14.55□□□□□ -0.08
SMCHD1-212ENST00000585229 KIF3BO15066 747 aa14.54□□□□□ -0.08
SMCHD1-212ENST00000585229 VASPP50552 380 aaPredicted RBP14.54□□□□□ -0.08
SMCHD1-212ENST00000585229 PIP4P2Q8N4L2 257 aa14.54□□□□□ -0.08
SMCHD1-212ENST00000585229 TRIM52Q96A61 297 aa14.54□□□□□ -0.08
SMCHD1-212ENST00000585229 MPHOSPH9Q99550 1183 aa14.54□□□□□ -0.08
SMCHD1-212ENST00000585229 CCER1Q8TC90 406 aaPredicted RBP14.53□□□□□ -0.08
SMCHD1-212ENST00000585229 E9PCH4 1651 aa14.52□□□□□ -0.08
SMCHD1-212ENST00000585229 ABCC3O15438 1527 aa14.52□□□□□ -0.08
SMCHD1-212ENST00000585229 EFCAB6Q5THR3 1501 aa14.52□□□□□ -0.08
SMCHD1-212ENST00000585229 CREBZFQ9NS37 354 aa14.52□□□□□ -0.09
SMCHD1-212ENST00000585229 KANK1Q14678 1352 aa14.51□□□□□ -0.09
SMCHD1-212ENST00000585229 CAMSAP1Q5T5Y3 1602 aa14.5□□□□□ -0.09
SMCHD1-212ENST00000585229 CHADLQ6NUI6 762 aa14.49□□□□□ -0.09
SMCHD1-212ENST00000585229 ANKRD30BQ9BXX2 1392 aa14.48□□□□□ -0.09
SMCHD1-212ENST00000585229 RPRD2Q5VT52 1461 aaKnown RBP14.48□□□□□ -0.09
SMCHD1-212ENST00000585229 ARHGAP31Q2M1Z3 1444 aa14.48□□□□□ -0.09
SMCHD1-212ENST00000585229 SPHKAPQ2M3C7 1700 aa14.47□□□□□ -0.09
SMCHD1-212ENST00000585229 MROH2AA6NES4 1674 aa14.46□□□□□ -0.09
SMCHD1-212ENST00000585229 PKD2Q13563 968 aa14.46□□□□□ -0.09
SMCHD1-212ENST00000585229 PTPRTO14522 1441 aa14.45□□□□□ -0.1
SMCHD1-212ENST00000585229 CLTCQ00610 1675 aaKnown RBP14.45□□□□□ -0.1
SMCHD1-212ENST00000585229 TRPM2O94759 1503 aa14.45□□□□□ -0.1
SMCHD1-212ENST00000585229 PLA2R1Q13018 1463 aa14.44□□□□□ -0.1
SMCHD1-212ENST00000585229 GGT6Q6P531 493 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms