RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 AFAP1Q8N556 730 aa12.83□□□□□ -0.36
SMCHD1-210ENST00000583800 FARP1Q9Y4F1 1045 aaPredicted RBP12.83□□□□□ -0.36
SMCHD1-210ENST00000583800 C3P01024 1663 aa12.83□□□□□ -0.36
SMCHD1-210ENST00000583800 STRCQ7RTU9 1775 aa12.82□□□□□ -0.36
SMCHD1-210ENST00000583800 CEBPAP49715 358 aaPredicted RBP12.82□□□□□ -0.36
SMCHD1-210ENST00000583800 MYT1LQ9UL68 1186 aa12.82□□□□□ -0.36
SMCHD1-210ENST00000583800 CCDC18Q5T9S5 1454 aa12.82□□□□□ -0.36
SMCHD1-210ENST00000583800 SETD1BQ9UPS6 1966 aaKnown RBP12.81□□□□□ -0.36
SMCHD1-210ENST00000583800 KIDINS220Q9ULH0 1771 aa12.81□□□□□ -0.36
SMCHD1-210ENST00000583800 CASKIN1Q8WXD9 1431 aa12.8□□□□□ -0.36
SMCHD1-210ENST00000583800 TRAPPC8Q9Y2L5 1435 aa12.8□□□□□ -0.36
SMCHD1-210ENST00000583800 MLH3Q9UHC1 1453 aa12.8□□□□□ -0.36
SMCHD1-210ENST00000583800 CERKQ8TCT0 537 aa12.78□□□□□ -0.36
SMCHD1-210ENST00000583800 UHRF1BP1Q6BDS2 1440 aa12.78□□□□□ -0.36
SMCHD1-210ENST00000583800 AGLP35573 1532 aa12.78□□□□□ -0.36
SMCHD1-210ENST00000583800 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
SMCHD1-210ENST00000583800 SAMD9LQ8IVG5 1584 aa12.77□□□□□ -0.37
SMCHD1-210ENST00000583800 CLCN6P51797 869 aa12.75□□□□□ -0.37
SMCHD1-210ENST00000583800 SYCP2Q9BX26 1530 aa12.75□□□□□ -0.37
SMCHD1-210ENST00000583800 SUPT6HQ7KZ85 1726 aaKnown RBP12.74□□□□□ -0.37
SMCHD1-210ENST00000583800 MROH2AA6NES4 1674 aa12.72□□□□□ -0.37
SMCHD1-210ENST00000583800 ZNF777Q9ULD5 760 aaPredicted RBP12.71□□□□□ -0.37
SMCHD1-210ENST00000583800 INO80Q9ULG1 1556 aaPredicted RBP12.71□□□□□ -0.37
SMCHD1-210ENST00000583800 GPATCH8Q9UKJ3 1502 aaKnown RBP12.71□□□□□ -0.38
SMCHD1-210ENST00000583800 ESF1Q9H501 851 aaKnown RBP12.7□□□□□ -0.38
SMCHD1-210ENST00000583800 ATP7AQ04656 1500 aa12.7□□□□□ -0.38
SMCHD1-210ENST00000583800 CLTCQ00610 1675 aaKnown RBP12.7□□□□□ -0.38
SMCHD1-210ENST00000583800 CNTLNQ9NXG0 1405 aa12.7□□□□□ -0.38
SMCHD1-210ENST00000583800 PLXNC1O60486 1568 aa12.69□□□□□ -0.38
SMCHD1-210ENST00000583800 PTPRTO14522 1441 aa12.68□□□□□ -0.38
SMCHD1-210ENST00000583800 CAMSAP1Q5T5Y3 1602 aa12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 MYO3AQ8NEV4 1616 aa12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 SPAG9O60271 1321 aaKnown RBP12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 NCOA1Q15788 1441 aa12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 HNRNPMP52272 730 aaKnown RBP eCLIP12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 ZNF142P52746 1687 aaPredicted RBP12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 LTBP4Q8N2S1 1624 aa12.66□□□□□ -0.38
SMCHD1-210ENST00000583800 TIAM1Q13009 1591 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 ADGBQ8N7X0 1667 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 DCBLD2Q96PD2 775 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 CCNB3Q8WWL7 1395 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 A2MP01023 1474 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 PLEKHH2Q8IVE3 1493 aa12.65□□□□□ -0.38
SMCHD1-210ENST00000583800 NPATQ14207 1427 aa12.64□□□□□ -0.39
SMCHD1-210ENST00000583800 KIAA1107Q9UPP5 1409 aa12.64□□□□□ -0.39
SMCHD1-210ENST00000583800 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
SMCHD1-210ENST00000583800 CFDP1Q9UEE9 299 aaPredicted RBP12.63□□□□□ -0.39
SMCHD1-210ENST00000583800 ZMYM3Q14202 1370 aa12.63□□□□□ -0.39
SMCHD1-210ENST00000583800 MTUS2Q5JR59 1369 aa12.63□□□□□ -0.39
SMCHD1-210ENST00000583800 EHBP1L1Q8N3D4 1523 aa12.62□□□□□ -0.39
SMCHD1-210ENST00000583800 CEP170BQ9Y4F5 1589 aaPredicted RBP12.61□□□□□ -0.39
SMCHD1-210ENST00000583800 FKBP8Q14318 412 aa12.61□□□□□ -0.39
SMCHD1-210ENST00000583800 ZRANB1Q9UGI0 708 aa12.6□□□□□ -0.39
SMCHD1-210ENST00000583800 PTPRKQ15262 1439 aa12.59□□□□□ -0.39
SMCHD1-210ENST00000583800 SPATA31D1Q6ZQQ2 1576 aa12.59□□□□□ -0.39
SMCHD1-210ENST00000583800 ZNF644Q9H582 1327 aaPredicted RBP12.59□□□□□ -0.39
SMCHD1-210ENST00000583800 IQSEC2Q5JU85 1478 aa12.59□□□□□ -0.39
SMCHD1-210ENST00000583800 MBD5Q9P267 1494 aa12.59□□□□□ -0.39
SMCHD1-210ENST00000583800 DISP3Q9P2K9 1392 aa12.58□□□□□ -0.4
SMCHD1-210ENST00000583800 GGT6Q6P531 493 aa12.58□□□□□ -0.4
SMCHD1-210ENST00000583800 CREBZFQ9NS37 354 aa12.58□□□□□ -0.4
SMCHD1-210ENST00000583800 NCKAP5LQ9HCH0 1330 aa12.58□□□□□ -0.4
SMCHD1-210ENST00000583800 PLA2R1Q13018 1463 aa12.57□□□□□ -0.4
SMCHD1-210ENST00000583800 CEP162Q5TB80 1403 aa12.56□□□□□ -0.4
SMCHD1-210ENST00000583800 TCOF1Q13428 1488 aaKnown RBP12.55□□□□□ -0.4
SMCHD1-210ENST00000583800 POLR1AO95602 1720 aaPredicted RBP12.55□□□□□ -0.4
SMCHD1-210ENST00000583800 ZNF335Q9H4Z2 1342 aaPredicted RBP12.55□□□□□ -0.4
SMCHD1-210ENST00000583800 DNMT1P26358 1616 aaKnown RBP12.55□□□□□ -0.4
SMCHD1-210ENST00000583800 CAMSAP2Q08AD1 1489 aa12.54□□□□□ -0.4
SMCHD1-210ENST00000583800 ILDR2Q71H61 639 aa12.54□□□□□ -0.4
SMCHD1-210ENST00000583800 RTEL1-TNFRSF6BF6WH68 1400 aa12.54□□□□□ -0.4
SMCHD1-210ENST00000583800 CCDC141Q6ZP82 1450 aa12.53□□□□□ -0.4
SMCHD1-210ENST00000583800 STAG3Q9UJ98 1225 aa12.53□□□□□ -0.4
SMCHD1-210ENST00000583800 A2ML1A8K2U0 1454 aa12.53□□□□□ -0.4
SMCHD1-210ENST00000583800 NCOA2Q15596 1464 aa12.53□□□□□ -0.4
SMCHD1-210ENST00000583800 DHX29Q7Z478 1369 aaKnown RBP12.52□□□□□ -0.41
SMCHD1-210ENST00000583800 KDM5DQ9BY66 1539 aa12.52□□□□□ -0.41
SMCHD1-210ENST00000583800 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
SMCHD1-210ENST00000583800 PKD2Q13563 968 aa12.51□□□□□ -0.41
SMCHD1-210ENST00000583800 NEURL4Q96JN8 1562 aa12.5□□□□□ -0.41
SMCHD1-210ENST00000583800 ARHGEF5Q12774 1597 aa12.49□□□□□ -0.41
SMCHD1-210ENST00000583800 FAM135AQ9P2D6 1515 aa12.49□□□□□ -0.41
SMCHD1-210ENST00000583800 PZPP20742 1482 aa12.49□□□□□ -0.41
SMCHD1-210ENST00000583800 TNRQ92752 1358 aa12.48□□□□□ -0.41
SMCHD1-210ENST00000583800 KIF3BO15066 747 aa12.48□□□□□ -0.41
SMCHD1-210ENST00000583800 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
SMCHD1-210ENST00000583800 UBAP1LF5GYI3 381 aa12.47□□□□□ -0.41
SMCHD1-210ENST00000583800 FBXO31Q5XUX0 539 aaPredicted RBP12.47□□□□□ -0.41
SMCHD1-210ENST00000583800 RNF17Q9BXT8 1623 aaKnown RBP12.45□□□□□ -0.42
SMCHD1-210ENST00000583800 SOCS7O14512 581 aa12.45□□□□□ -0.42
SMCHD1-210ENST00000583800 ZC3H13Q5T200 1668 aaKnown RBP12.45□□□□□ -0.42
SMCHD1-210ENST00000583800 MAST1Q9Y2H9 1570 aa12.44□□□□□ -0.42
SMCHD1-210ENST00000583800 CEP152O94986 1710 aa12.44□□□□□ -0.42
SMCHD1-210ENST00000583800 CFAP65Q6ZU64 1925 aaKnown RBP12.44□□□□□ -0.42
SMCHD1-210ENST00000583800 UGGT1Q9NYU2 1555 aa12.43□□□□□ -0.42
SMCHD1-210ENST00000583800 WASHC2CQ9Y4E1 1318 aa12.43□□□□□ -0.42
SMCHD1-210ENST00000583800 LRRC9Q6ZRR7 1453 aa12.43□□□□□ -0.42
SMCHD1-210ENST00000583800 OTUD5Q96G74 571 aa12.43□□□□□ -0.42
SMCHD1-210ENST00000583800 EIF2AK4Q9P2K8 1649 aaKnown RBP12.43□□□□□ -0.42
SMCHD1-210ENST00000583800 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms