RNA–Protein interactions for RNA: ENST00000583577.1

MKS1-212, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-212ENST00000583577 PLXNC1O60486 1568 aa15.45■□□□□ 0.06
MKS1-212ENST00000583577 TNRQ92752 1358 aa15.45■□□□□ 0.06
MKS1-212ENST00000583577 A2MP01023 1474 aa15.45■□□□□ 0.06
MKS1-212ENST00000583577 ATP7AQ04656 1500 aa15.44■□□□□ 0.06
MKS1-212ENST00000583577 FBXO31Q5XUX0 539 aaPredicted RBP15.44■□□□□ 0.06
MKS1-212ENST00000583577 UPF1Q92900 1129 aaKnown RBP eCLIP15.44■□□□□ 0.06
MKS1-212ENST00000583577 DEPDC5O75140 1603 aa15.43■□□□□ 0.06
MKS1-212ENST00000583577 SYCP2Q9BX26 1530 aa15.43■□□□□ 0.06
MKS1-212ENST00000583577 FMN1Q68DA7 1419 aa15.43■□□□□ 0.06
MKS1-212ENST00000583577 HNRNPMP52272 730 aaKnown RBP eCLIP15.42■□□□□ 0.06
MKS1-212ENST00000583577 THEMISQ8N1K5 641 aaPredicted RBP15.42■□□□□ 0.06
MKS1-212ENST00000583577 XIRP1Q702N8 1843 aaKnown RBP15.42■□□□□ 0.06
MKS1-212ENST00000583577 MED14O60244 1454 aa15.41■□□□□ 0.06
MKS1-212ENST00000583577 ARHGAP35Q9NRY4 1499 aa15.4■□□□□ 0.06
MKS1-212ENST00000583577 UGGT1Q9NYU2 1555 aa15.39■□□□□ 0.05
MKS1-212ENST00000583577 INO80Q9ULG1 1556 aaPredicted RBP15.39■□□□□ 0.05
MKS1-212ENST00000583577 ADGBQ8N7X0 1667 aa15.38■□□□□ 0.05
MKS1-212ENST00000583577 FAM135AQ9P2D6 1515 aa15.38■□□□□ 0.05
MKS1-212ENST00000583577 LOC105371045A0A1W2PR82 267 aa15.37■□□□□ 0.05
MKS1-212ENST00000583577 TRIM52Q96A61 297 aa15.36■□□□□ 0.05
MKS1-212ENST00000583577 ROBO1Q9Y6N7 1651 aa15.35■□□□□ 0.05
MKS1-212ENST00000583577 TRIM26Q12899 539 aaPredicted RBP15.34■□□□□ 0.05
MKS1-212ENST00000583577 ZC3H13Q5T200 1668 aaKnown RBP15.34■□□□□ 0.05
MKS1-212ENST00000583577 FAM135BQ49AJ0 1406 aa15.34■□□□□ 0.05
MKS1-212ENST00000583577 PZPP20742 1482 aa15.33■□□□□ 0.05
MKS1-212ENST00000583577 CFAP65Q6ZU64 1925 aaKnown RBP15.33■□□□□ 0.05
MKS1-212ENST00000583577 PCGF6Q9BYE7 350 aa15.32■□□□□ 0.04
MKS1-212ENST00000583577 CEP162Q5TB80 1403 aa15.32■□□□□ 0.04
MKS1-212ENST00000583577 MIA2Q96PC5 1412 aa15.32■□□□□ 0.04
MKS1-212ENST00000583577 NLRP1Q9C000 1473 aa15.32■□□□□ 0.04
MKS1-212ENST00000583577 PHLPP1O60346 1717 aa15.29■□□□□ 0.04
MKS1-212ENST00000583577 KDM5DQ9BY66 1539 aa15.28■□□□□ 0.04
MKS1-212ENST00000583577 WASHC2CQ9Y4E1 1318 aa15.28■□□□□ 0.04
MKS1-212ENST00000583577 GPATCH8Q9UKJ3 1502 aaKnown RBP15.27■□□□□ 0.04
MKS1-212ENST00000583577 KIF3BO15066 747 aa15.27■□□□□ 0.04
MKS1-212ENST00000583577 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.04
MKS1-212ENST00000583577 KIAA1107Q9UPP5 1409 aa15.26■□□□□ 0.03
MKS1-212ENST00000583577 PLEKHH2Q8IVE3 1493 aa15.26■□□□□ 0.03
MKS1-212ENST00000583577 MEX3CQ5U5Q3 659 aaKnown RBP15.25■□□□□ 0.03
MKS1-212ENST00000583577 CFDP1Q9UEE9 299 aaPredicted RBP15.25■□□□□ 0.03
MKS1-212ENST00000583577 CCDC18Q5T9S5 1454 aa15.25■□□□□ 0.03
MKS1-212ENST00000583577 ZNF772Q68DY9 489 aaPredicted RBP15.24■□□□□ 0.03
MKS1-212ENST00000583577 DHX29Q7Z478 1369 aaKnown RBP15.24■□□□□ 0.03
MKS1-212ENST00000583577 JCADQ9P266 1359 aa15.24■□□□□ 0.03
MKS1-212ENST00000583577 TMEM94Q12767 1356 aa15.22■□□□□ 0.03
MKS1-212ENST00000583577 SCAF11Q99590 1463 aaKnown RBP15.21■□□□□ 0.03
MKS1-212ENST00000583577 UBR1Q8IWV7 1749 aa15.21■□□□□ 0.03
MKS1-212ENST00000583577 CASKIN1Q8WXD9 1431 aa15.21■□□□□ 0.03
MKS1-212ENST00000583577 RXRBP28702 533 aa15.21■□□□□ 0.03
MKS1-212ENST00000583577 RBM33Q96EV2 1170 aaKnown RBP15.21■□□□□ 0.03
MKS1-212ENST00000583577 FYCO1Q9BQS8 1478 aa15.2■□□□□ 0.02
MKS1-212ENST00000583577 LRP6O75581 1613 aa15.2■□□□□ 0.02
MKS1-212ENST00000583577 TXNDC2Q86VQ3 553 aa15.19■□□□□ 0.02
MKS1-212ENST00000583577 LTKP29376 864 aa15.18■□□□□ 0.02
MKS1-212ENST00000583577 CCNB3Q8WWL7 1395 aa15.18■□□□□ 0.02
MKS1-212ENST00000583577 LRRC9Q6ZRR7 1453 aa15.18■□□□□ 0.02
MKS1-212ENST00000583577 ZNF644Q9H582 1327 aaPredicted RBP15.17■□□□□ 0.02
MKS1-212ENST00000583577 PROSER2Q86WR7 435 aaPredicted RBP15.17■□□□□ 0.02
MKS1-212ENST00000583577 COL16A1Q07092 1604 aaPredicted RBP15.15■□□□□ 0.02
MKS1-212ENST00000583577 MAP3K1Q13233 1512 aa15.15■□□□□ 0.02
MKS1-212ENST00000583577 RTEL1-TNFRSF6BF6WH68 1400 aa15.15■□□□□ 0.02
MKS1-212ENST00000583577 SPATA31A6Q5VVP1 1343 aa15.14■□□□□ 0.01
MKS1-212ENST00000583577 VPS8Q8N3P4 1428 aa15.13■□□□□ 0.01
MKS1-212ENST00000583577 SLAIN2Q9P270 581 aa15.13■□□□□ 0.01
MKS1-212ENST00000583577 EID1Q9Y6B2 187 aa15.13■□□□□ 0.01
MKS1-212ENST00000583577 ERVK-7P63135 1459 aa15.13■□□□□ 0.01
MKS1-212ENST00000583577 CDK12Q9NYV4 1490 aaPredicted RBP15.13■□□□□ 0.01
MKS1-212ENST00000583577 NCOA2Q15596 1464 aa15.12■□□□□ 0.01
MKS1-212ENST00000583577 MBD5Q9P267 1494 aa15.12■□□□□ 0.01
MKS1-212ENST00000583577 KCNA6P17658 529 aa15.11■□□□□ 0.01
MKS1-212ENST00000583577 SLIT1O75093 1534 aa15.11■□□□□ 0.01
MKS1-212ENST00000583577 MSH6P52701 1360 aa15.11■□□□□ 0.01
MKS1-212ENST00000583577 ARHGAP23Q9P227 1491 aa15.1■□□□□ 0.01
MKS1-212ENST00000583577 NUTM2BA6NNL0 878 aaPredicted RBP15.1■□□□□ 0.01
MKS1-212ENST00000583577 NUTM2EB1AL46 878 aaPredicted RBP15.1■□□□□ 0.01
MKS1-212ENST00000583577 NUTM2DQ5VT03 806 aaPredicted RBP15.1■□□□□ 0.01
MKS1-212ENST00000583577 NUTM2AQ8IVF1 878 aaPredicted RBP15.1■□□□□ 0.01
MKS1-212ENST00000583577 ZRANB1Q9UGI0 708 aa15.1■□□□□ 0.01
MKS1-212ENST00000583577 SHPRHQ149N8 1683 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 CEP152O94986 1710 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 ABCC3O15438 1527 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 TIAM1Q13009 1591 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 SETBP1Q9Y6X0 1596 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 EP400Q96L91 3159 aa15.09■□□□□ 0.01
MKS1-212ENST00000583577 FGD6Q6ZV73 1430 aa15.08■□□□□ 0
MKS1-212ENST00000583577 PRDM15P57071 1507 aaPredicted RBP15.07■□□□□ 0
MKS1-212ENST00000583577 SLC26A8Q96RN1 970 aa15.07■□□□□ 0
MKS1-212ENST00000583577 AFF2P51816 1311 aa15.07■□□□□ 0
MKS1-212ENST00000583577 RGS12O14924 1447 aa15.07■□□□□ 0
MKS1-212ENST00000583577 FOXD1Q16676 465 aa15.06■□□□□ 0
MKS1-212ENST00000583577 CCDC141Q6ZP82 1450 aa15.04■□□□□ -0
MKS1-212ENST00000583577 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
MKS1-212ENST00000583577 PIK3C2BO00750 1634 aa15.03■□□□□ -0
MKS1-212ENST00000583577 STAG3Q9UJ98 1225 aa15.03■□□□□ -0
MKS1-212ENST00000583577 NKTRP30414 1462 aaKnown RBP15.02■□□□□ -0
MKS1-212ENST00000583577 MTUS2Q5JR59 1369 aa15.02■□□□□ -0
MKS1-212ENST00000583577 EHBP1L1Q8N3D4 1523 aa15.02□□□□□ -0.01
MKS1-212ENST00000583577 TMEM2Q9UHN6 1383 aa15.01□□□□□ -0.01
MKS1-212ENST00000583577 RBM6P78332 1123 aaKnown RBP15.01□□□□□ -0.01
MKS1-212ENST00000583577 QTRT2Q9H974 415 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms