RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 AFAP1Q8N556 730 aa15.32■□□□□ 0.04
SS18-217ENST00000580958 RTEL1-TNFRSF6BF6WH68 1400 aa15.32■□□□□ 0.04
SS18-217ENST00000580958 NEO1Q92859 1461 aa15.32■□□□□ 0.04
SS18-217ENST00000580958 KIDINS220Q9ULH0 1771 aa15.31■□□□□ 0.04
SS18-217ENST00000580958 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
SS18-217ENST00000580958 PPRC1Q5VV67 1664 aaKnown RBP15.31■□□□□ 0.04
SS18-217ENST00000580958 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
SS18-217ENST00000580958 RICTORQ6R327 1708 aa15.29■□□□□ 0.04
SS18-217ENST00000580958 KDM5CP41229 1560 aa15.28■□□□□ 0.04
SS18-217ENST00000580958 ZNF518AQ6AHZ1 1483 aa15.28■□□□□ 0.04
SS18-217ENST00000580958 POGZQ7Z3K3 1410 aa15.28■□□□□ 0.04
SS18-217ENST00000580958 ERBINQ96RT1 1412 aa15.28■□□□□ 0.04
SS18-217ENST00000580958 NUP155O75694 1391 aa15.28■□□□□ 0.04
SS18-217ENST00000580958 FAM69CQ0P6D2 419 aa15.27■□□□□ 0.04
SS18-217ENST00000580958 IQGAP3Q86VI3 1631 aa15.27■□□□□ 0.03
SS18-217ENST00000580958 HECW2Q9P2P5 1572 aa15.27■□□□□ 0.03
SS18-217ENST00000580958 FAM135AQ9P2D6 1515 aa15.25■□□□□ 0.03
SS18-217ENST00000580958 EIF2AK4Q9P2K8 1649 aaKnown RBP15.25■□□□□ 0.03
SS18-217ENST00000580958 ANKRD30BQ9BXX2 1392 aa15.24■□□□□ 0.03
SS18-217ENST00000580958 MYT1LQ9UL68 1186 aa15.24■□□□□ 0.03
SS18-217ENST00000580958 MAGI2Q86UL8 1455 aa15.24■□□□□ 0.03
SS18-217ENST00000580958 DEPDC5O75140 1603 aa15.23■□□□□ 0.03
SS18-217ENST00000580958 ABCA6Q8N139 1617 aa15.23■□□□□ 0.03
SS18-217ENST00000580958 TONSLQ96HA7 1378 aa15.23■□□□□ 0.03
SS18-217ENST00000580958 PKD2Q13563 968 aa15.22■□□□□ 0.03
SS18-217ENST00000580958 TIMELESSQ9UNS1 1208 aa15.22■□□□□ 0.03
SS18-217ENST00000580958 MLH3Q9UHC1 1453 aa15.21■□□□□ 0.03
SS18-217ENST00000580958 FRMPD1Q5SYB0 1578 aa15.21■□□□□ 0.03
SS18-217ENST00000580958 TEX14Q8IWB6 1497 aa15.2■□□□□ 0.02
SS18-217ENST00000580958 RPRD2Q5VT52 1461 aaKnown RBP15.19■□□□□ 0.02
SS18-217ENST00000580958 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
SS18-217ENST00000580958 DIP2CQ9Y2E4 1556 aa15.17■□□□□ 0.02
SS18-217ENST00000580958 A2MP01023 1474 aa15.17■□□□□ 0.02
SS18-217ENST00000580958 RAPGEF3O95398 923 aa15.17■□□□□ 0.02
SS18-217ENST00000580958 MROH1Q8NDA8 1641 aa15.17■□□□□ 0.02
SS18-217ENST00000580958 ZNF316A6NFI3 1004 aaPredicted RBP15.16■□□□□ 0.02
SS18-217ENST00000580958 PPP1R15AO75807 674 aaPredicted RBP15.16■□□□□ 0.02
SS18-217ENST00000580958 BCORL1Q5H9F3 1711 aa15.16■□□□□ 0.02
SS18-217ENST00000580958 RNF17Q9BXT8 1623 aaKnown RBP15.16■□□□□ 0.02
SS18-217ENST00000580958 E9PCH4 1651 aa15.16■□□□□ 0.02
SS18-217ENST00000580958 TET3O43151 1660 aa15.16■□□□□ 0.02
SS18-217ENST00000580958 CEP152O94986 1710 aa15.15■□□□□ 0.02
SS18-217ENST00000580958 CAPN15O75808 1086 aa15.15■□□□□ 0.02
SS18-217ENST00000580958 ZMYM4Q5VZL5 1548 aa15.15■□□□□ 0.02
SS18-217ENST00000580958 VWDEQ8N2E2 1590 aa15.15■□□□□ 0.02
SS18-217ENST00000580958 PRDM15P57071 1507 aaPredicted RBP15.14■□□□□ 0.01
SS18-217ENST00000580958 SLC4A2P04920 1241 aa15.14■□□□□ 0.01
SS18-217ENST00000580958 KIF3BO15066 747 aa15.12■□□□□ 0.01
SS18-217ENST00000580958 SPHKAPQ2M3C7 1700 aa15.12■□□□□ 0.01
SS18-217ENST00000580958 KANK1Q14678 1352 aa15.11■□□□□ 0.01
SS18-217ENST00000580958 YEATS2Q9ULM3 1422 aa15.09■□□□□ 0.01
SS18-217ENST00000580958 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
SS18-217ENST00000580958 SPINK5Q9NQ38 1064 aaPredicted RBP15.09■□□□□ 0.01
SS18-217ENST00000580958 CFAP65Q6ZU64 1925 aaKnown RBP15.08■□□□□ 0
SS18-217ENST00000580958 PLA2R1Q13018 1463 aa15.08■□□□□ 0
SS18-217ENST00000580958 ATP10AO60312 1499 aa15.05■□□□□ -0
SS18-217ENST00000580958 EFCAB6Q5THR3 1501 aa15.05■□□□□ -0
SS18-217ENST00000580958 LMTK2Q8IWU2 1503 aa15.05■□□□□ -0
SS18-217ENST00000580958 COL17A1Q9UMD9 1497 aaPredicted RBP15.04■□□□□ -0
SS18-217ENST00000580958 CCDC144AA2RUR9 1427 aa15.04■□□□□ -0
SS18-217ENST00000580958 CAMSAP1Q5T5Y3 1602 aa15.03■□□□□ -0
SS18-217ENST00000580958 TRPM2O94759 1503 aa15.03■□□□□ -0
SS18-217ENST00000580958 CLTCL1P53675 1640 aa15.03■□□□□ -0
SS18-217ENST00000580958 REREQ9P2R6 1566 aa15.02■□□□□ -0
SS18-217ENST00000580958 ARHGEF40Q8TER5 1519 aa15.02■□□□□ -0
SS18-217ENST00000580958 DNAJC5Q9H3Z4 198 aa15.02■□□□□ -0
SS18-217ENST00000580958 ZC3H13Q5T200 1668 aaKnown RBP15.02□□□□□ -0.01
SS18-217ENST00000580958 ABCC3O15438 1527 aa15.02□□□□□ -0.01
SS18-217ENST00000580958 SIGLEC1Q9BZZ2 1709 aa15.01□□□□□ -0.01
SS18-217ENST00000580958 KIF1BO60333 1816 aa15.01□□□□□ -0.01
SS18-217ENST00000580958 PTPRTO14522 1441 aa15□□□□□ -0.01
SS18-217ENST00000580958 GGT6Q6P531 493 aa15□□□□□ -0.01
SS18-217ENST00000580958 NBPF8Q3BBV2 869 aa14.99□□□□□ -0.01
SS18-217ENST00000580958 DIEXFQ68CQ4 756 aaKnown RBP14.99□□□□□ -0.01
SS18-217ENST00000580958 DSG3P32926 999 aa14.97□□□□□ -0.01
SS18-217ENST00000580958 AGLP35573 1532 aa14.97□□□□□ -0.01
SS18-217ENST00000580958 UHRF1BP1Q6BDS2 1440 aa14.95□□□□□ -0.02
SS18-217ENST00000580958 TRHP20396 242 aaPredicted RBP14.95□□□□□ -0.02
SS18-217ENST00000580958 UGGT1Q9NYU2 1555 aa14.94□□□□□ -0.02
SS18-217ENST00000580958 MROH2AA6NES4 1674 aa14.94□□□□□ -0.02
SS18-217ENST00000580958 CLTCQ00610 1675 aaKnown RBP14.93□□□□□ -0.02
SS18-217ENST00000580958 WASHC2CQ9Y4E1 1318 aa14.93□□□□□ -0.02
SS18-217ENST00000580958 NPATQ14207 1427 aa14.93□□□□□ -0.02
SS18-217ENST00000580958 SPATA31E1Q6ZUB1 1445 aa14.93□□□□□ -0.02
SS18-217ENST00000580958 ZNF326Q5BKZ1 582 aaKnown RBP14.93□□□□□ -0.02
SS18-217ENST00000580958 TRPM1Q7Z4N2 1603 aa14.92□□□□□ -0.02
SS18-217ENST00000580958 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
SS18-217ENST00000580958 DCAF11Q8TEB1 546 aa14.92□□□□□ -0.02
SS18-217ENST00000580958 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
SS18-217ENST00000580958 RALGAPBQ86X10 1494 aa14.92□□□□□ -0.02
SS18-217ENST00000580958 PREX1Q8TCU6 1659 aa14.92□□□□□ -0.02
SS18-217ENST00000580958 KDM2AQ9Y2K7 1162 aa14.91□□□□□ -0.02
SS18-217ENST00000580958 IFT172Q9UG01 1749 aa14.91□□□□□ -0.02
SS18-217ENST00000580958 NEURL4Q96JN8 1562 aa14.9□□□□□ -0.02
SS18-217ENST00000580958 SYNMO15061 1565 aa14.9□□□□□ -0.02
SS18-217ENST00000580958 POLR1AO95602 1720 aaPredicted RBP14.89□□□□□ -0.03
SS18-217ENST00000580958 HSPA5P11021 654 aaKnown RBP14.89□□□□□ -0.03
SS18-217ENST00000580958 SAMD1Q6SPF0 538 aaPredicted RBP14.89□□□□□ -0.03
SS18-217ENST00000580958 ZNF219Q9P2Y4 722 aaPredicted RBP14.89□□□□□ -0.03
SS18-217ENST00000580958 ARHGAP31Q2M1Z3 1444 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 234.5 ms