RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 MYO3AQ8NEV4 1616 aa22.82■■□□□ 1.24
SMARCE1-216ENST00000580419 EIF2AK4Q9P2K8 1649 aaKnown RBP22.82■■□□□ 1.24
SMARCE1-216ENST00000580419 KIF3BO15066 747 aa22.81■■□□□ 1.24
SMARCE1-216ENST00000580419 RNF17Q9BXT8 1623 aaKnown RBP22.81■■□□□ 1.24
SMARCE1-216ENST00000580419 CEP170BQ9Y4F5 1589 aaPredicted RBP22.8■■□□□ 1.24
SMARCE1-216ENST00000580419 PZPP20742 1482 aa22.8■■□□□ 1.24
SMARCE1-216ENST00000580419 SHANK2Q9UPX8 1470 aa22.79■■□□□ 1.24
SMARCE1-216ENST00000580419 CAMSAP1Q5T5Y3 1602 aa22.79■■□□□ 1.24
SMARCE1-216ENST00000580419 APLP2Q06481 763 aa22.79■■□□□ 1.24
SMARCE1-216ENST00000580419 PKD2Q13563 968 aa22.78■■□□□ 1.24
SMARCE1-216ENST00000580419 ZC3H13Q5T200 1668 aaKnown RBP22.77■■□□□ 1.24
SMARCE1-216ENST00000580419 A2ML1A8K2U0 1454 aa22.77■■□□□ 1.24
SMARCE1-216ENST00000580419 TCOF1Q13428 1488 aaKnown RBP22.77■■□□□ 1.24
SMARCE1-216ENST00000580419 IQSEC2Q5JU85 1478 aa22.76■■□□□ 1.23
SMARCE1-216ENST00000580419 WASHC2CQ9Y4E1 1318 aa22.75■■□□□ 1.23
SMARCE1-216ENST00000580419 DUOX2Q9NRD8 1548 aa22.74■■□□□ 1.23
SMARCE1-216ENST00000580419 PTPN23Q9H3S7 1636 aa22.72■■□□□ 1.23
SMARCE1-216ENST00000580419 CROCC2H7BZ55 1655 aa22.72■■□□□ 1.23
SMARCE1-216ENST00000580419 NLRP1Q9C000 1473 aa22.72■■□□□ 1.23
SMARCE1-216ENST00000580419 TNRQ92752 1358 aa22.71■■□□□ 1.23
SMARCE1-216ENST00000580419 DNMT1P26358 1616 aaKnown RBP22.71■■□□□ 1.23
SMARCE1-216ENST00000580419 LTBP4Q8N2S1 1624 aa22.71■■□□□ 1.23
SMARCE1-216ENST00000580419 FGD6Q6ZV73 1430 aa22.7■■□□□ 1.22
SMARCE1-216ENST00000580419 ABCC5O15440 1437 aa22.69■■□□□ 1.22
SMARCE1-216ENST00000580419 ERBINQ96RT1 1412 aa22.69■■□□□ 1.22
SMARCE1-216ENST00000580419 ABCC3O15438 1527 aa22.68■■□□□ 1.22
SMARCE1-216ENST00000580419 MROH1Q8NDA8 1641 aa22.68■■□□□ 1.22
SMARCE1-216ENST00000580419 SPATA31D1Q6ZQQ2 1576 aa22.65■■□□□ 1.22
SMARCE1-216ENST00000580419 DAPK1P53355 1430 aa22.65■■□□□ 1.22
SMARCE1-216ENST00000580419 PRDM15P57071 1507 aaPredicted RBP22.64■■□□□ 1.21
SMARCE1-216ENST00000580419 ARHGAP31Q2M1Z3 1444 aa22.64■■□□□ 1.21
SMARCE1-216ENST00000580419 KIF15Q9NS87 1388 aa22.63■■□□□ 1.21
SMARCE1-216ENST00000580419 DEPDC5O75140 1603 aa22.62■■□□□ 1.21
SMARCE1-216ENST00000580419 FBXO31Q5XUX0 539 aaPredicted RBP22.62■■□□□ 1.21
SMARCE1-216ENST00000580419 POLR1AO95602 1720 aaPredicted RBP22.62■■□□□ 1.21
SMARCE1-216ENST00000580419 THEMISQ8N1K5 641 aaPredicted RBP22.61■■□□□ 1.21
SMARCE1-216ENST00000580419 NCKAP5LQ9HCH0 1330 aa22.6■■□□□ 1.21
SMARCE1-216ENST00000580419 ANKRD30AQ9BXX3 1397 aa22.59■■□□□ 1.21
SMARCE1-216ENST00000580419 MED14O60244 1454 aa22.58■■□□□ 1.2
SMARCE1-216ENST00000580419 ADGRL2O95490 1459 aa22.58■■□□□ 1.2
SMARCE1-216ENST00000580419 UGGT1Q9NYU2 1555 aa22.58■■□□□ 1.2
SMARCE1-216ENST00000580419 ERVK-7P63135 1459 aa22.57■■□□□ 1.2
SMARCE1-216ENST00000580419 NEURL4Q96JN8 1562 aa22.55■■□□□ 1.2
SMARCE1-216ENST00000580419 LMTK2Q8IWU2 1503 aa22.55■■□□□ 1.2
SMARCE1-216ENST00000580419 CEP152O94986 1710 aa22.54■■□□□ 1.2
SMARCE1-216ENST00000580419 ANKLE2Q86XL3 938 aa22.54■■□□□ 1.2
SMARCE1-216ENST00000580419 VWDEQ8N2E2 1590 aa22.53■■□□□ 1.2
SMARCE1-216ENST00000580419 KANK1Q14678 1352 aa22.51■■□□□ 1.19
SMARCE1-216ENST00000580419 RRP7BPQ9NSQ0 103 aa22.51■■□□□ 1.19
SMARCE1-216ENST00000580419 ZNF335Q9H4Z2 1342 aaPredicted RBP22.5■■□□□ 1.19
SMARCE1-216ENST00000580419 KDM5AP29375 1690 aaKnown RBP22.49■■□□□ 1.19
SMARCE1-216ENST00000580419 CPS1P31327 1500 aa22.49■■□□□ 1.19
SMARCE1-216ENST00000580419 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.49■■□□□ 1.19
SMARCE1-216ENST00000580419 CFAP65Q6ZU64 1925 aaKnown RBP22.48■■□□□ 1.19
SMARCE1-216ENST00000580419 UBR1Q8IWV7 1749 aa22.47■■□□□ 1.19
SMARCE1-216ENST00000580419 NPHP4O75161 1426 aaPredicted RBP22.45■■□□□ 1.18
SMARCE1-216ENST00000580419 SLIT1O75093 1534 aa22.45■■□□□ 1.18
SMARCE1-216ENST00000580419 ARHGAP23Q9P227 1491 aa22.44■■□□□ 1.18
SMARCE1-216ENST00000580419 IQGAP1P46940 1657 aa22.43■■□□□ 1.18
SMARCE1-216ENST00000580419 RPRD2Q5VT52 1461 aaKnown RBP22.42■■□□□ 1.18
SMARCE1-216ENST00000580419 ANKRD50Q9ULJ7 1429 aa22.41■■□□□ 1.18
SMARCE1-216ENST00000580419 ROCK1Q13464 1354 aa22.41■■□□□ 1.18
SMARCE1-216ENST00000580419 EFCAB6Q5THR3 1501 aa22.4■■□□□ 1.18
SMARCE1-216ENST00000580419 CHIC2Q9UKJ5 165 aa22.39■■□□□ 1.17
SMARCE1-216ENST00000580419 NOS1P29475 1434 aa22.39■■□□□ 1.17
SMARCE1-216ENST00000580419 SCAF11Q99590 1463 aaKnown RBP22.38■■□□□ 1.17
SMARCE1-216ENST00000580419 FAM50AQ14320 339 aaKnown RBP22.36■■□□□ 1.17
SMARCE1-216ENST00000580419 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.35■■□□□ 1.172e-15■■■□□ 14.9
SMARCE1-216ENST00000580419 SLC52A1Q9NWF4 448 aa22.35■■□□□ 1.17
SMARCE1-216ENST00000580419 PIK3C2BO00750 1634 aa22.34■■□□□ 1.17
SMARCE1-216ENST00000580419 TMEM2Q9UHN6 1383 aa22.33■■□□□ 1.17
SMARCE1-216ENST00000580419 UNC13BO14795 1591 aa22.33■■□□□ 1.16
SMARCE1-216ENST00000580419 TET3O43151 1660 aa22.33■■□□□ 1.16
SMARCE1-216ENST00000580419 SYNMO15061 1565 aa22.32■■□□□ 1.16
SMARCE1-216ENST00000580419 UBAP1LF5GYI3 381 aa22.31■■□□□ 1.16
SMARCE1-216ENST00000580419 EID1Q9Y6B2 187 aa22.31■■□□□ 1.16
SMARCE1-216ENST00000580419 GCC2Q8IWJ2 1684 aa22.3■■□□□ 1.16
SMARCE1-216ENST00000580419 TOM1O60784 492 aa22.29■■□□□ 1.16
SMARCE1-216ENST00000580419 IDI1Q13907 227 aa22.29■■□□□ 1.16
SMARCE1-216ENST00000580419 LTKP29376 864 aa22.28■■□□□ 1.16
SMARCE1-216ENST00000580419 TXNDC2Q86VQ3 553 aa22.28■■□□□ 1.16
SMARCE1-216ENST00000580419 ADGRB3O60242 1522 aa22.26■■□□□ 1.15
SMARCE1-216ENST00000580419 STRCP1A6NGW2 1772 aa22.26■■□□□ 1.15
SMARCE1-216ENST00000580419 IQGAP3Q86VI3 1631 aa22.24■■□□□ 1.15
SMARCE1-216ENST00000580419 LRRC7Q96NW7 1537 aa22.24■■□□□ 1.15
SMARCE1-216ENST00000580419 STAG3Q9UJ98 1225 aa22.23■■□□□ 1.15
SMARCE1-216ENST00000580419 RRBP1Q9P2E9 1410 aaKnown RBP22.2■■□□□ 1.14
SMARCE1-216ENST00000580419 ALKQ9UM73 1620 aa22.18■■□□□ 1.14
SMARCE1-216ENST00000580419 HDGFP51858 240 aaKnown RBP22.18■■□□□ 1.14
SMARCE1-216ENST00000580419 E9PCH4 1651 aa22.17■■□□□ 1.14
SMARCE1-216ENST00000580419 TMEM131LA2VDJ0 1609 aa22.17■■□□□ 1.14
SMARCE1-216ENST00000580419 ZFYVE9O95405 1425 aa22.16■■□□□ 1.14
SMARCE1-216ENST00000580419 DISP3Q9P2K9 1392 aa22.13■■□□□ 1.13
SMARCE1-216ENST00000580419 KCNA6P17658 529 aa22.13■■□□□ 1.13
SMARCE1-216ENST00000580419 XIRP1Q702N8 1843 aaKnown RBP22.13■■□□□ 1.13
SMARCE1-216ENST00000580419 PLEKHG1Q9ULL1 1385 aa22.12■■□□□ 1.13
SMARCE1-216ENST00000580419 MYO5BQ9ULV0 1848 aa22.12■■□□□ 1.13
SMARCE1-216ENST00000580419 NWD1Q149M9 1564 aa22.12■■□□□ 1.13
SMARCE1-216ENST00000580419 NUP155O75694 1391 aa22.12■■□□□ 1.13
SMARCE1-216ENST00000580419 NKTRP30414 1462 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms