RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 ALKQ9UM73 1620 aa31.4■■■□□ 2.62
LIMD2-209ENST00000580222 TNRQ92752 1358 aa31.4■■■□□ 2.62
LIMD2-209ENST00000580222 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.38■■■□□ 2.61
LIMD2-209ENST00000580222 MBD5Q9P267 1494 aa31.37■■■□□ 2.61
LIMD2-209ENST00000580222 DHX29Q7Z478 1369 aaKnown RBP31.36■■■□□ 2.61
LIMD2-209ENST00000580222 VWDEQ8N2E2 1590 aa31.35■■■□□ 2.61
LIMD2-209ENST00000580222 ANKLE2Q86XL3 938 aa31.34■■■□□ 2.61
LIMD2-209ENST00000580222 PHF23Q9BUL5 403 aaPredicted RBP31.34■■■□□ 2.61
LIMD2-209ENST00000580222 SENP3Q9H4L4 574 aaPredicted RBP31.34■■■□□ 2.61
LIMD2-209ENST00000580222 KIF3BO15066 747 aa31.32■■■□□ 2.6
LIMD2-209ENST00000580222 ADGBQ8N7X0 1667 aa31.31■■■□□ 2.6
LIMD2-209ENST00000580222 PZPP20742 1482 aa31.28■■■□□ 2.6
LIMD2-209ENST00000580222 RTEL1-TNFRSF6BF6WH68 1400 aa31.28■■■□□ 2.6
LIMD2-209ENST00000580222 POLR1AO95602 1720 aaPredicted RBP31.27■■■□□ 2.6
LIMD2-209ENST00000580222 THEMISQ8N1K5 641 aaPredicted RBP31.27■■■□□ 2.6
LIMD2-209ENST00000580222 MTUS2Q5JR59 1369 aa31.27■■■□□ 2.6
LIMD2-209ENST00000580222 NPHP4O75161 1426 aaPredicted RBP31.26■■■□□ 2.6
LIMD2-209ENST00000580222 MIA2Q96PC5 1412 aa31.26■■■□□ 2.6
LIMD2-209ENST00000580222 WASHC2CQ9Y4E1 1318 aa31.24■■■□□ 2.59
LIMD2-209ENST00000580222 MED14O60244 1454 aa31.23■■■□□ 2.59
LIMD2-209ENST00000580222 TIAM1Q13009 1591 aa31.22■■■□□ 2.59
LIMD2-209ENST00000580222 RGS17Q9UGC6 210 aaPredicted RBP31.22■■■□□ 2.59
LIMD2-209ENST00000580222 KDM5DQ9BY66 1539 aa31.19■■■□□ 2.58
LIMD2-209ENST00000580222 LRRC7Q96NW7 1537 aa31.18■■■□□ 2.58
LIMD2-209ENST00000580222 UGGT1Q9NYU2 1555 aa31.17■■■□□ 2.58
LIMD2-209ENST00000580222 NLRP1Q9C000 1473 aa31.16■■■□□ 2.58
LIMD2-209ENST00000580222 FAM135AQ9P2D6 1515 aa31.14■■■□□ 2.57
LIMD2-209ENST00000580222 DEPDC5O75140 1603 aa31.13■■■□□ 2.57
LIMD2-209ENST00000580222 STRCP1A6NGW2 1772 aa31.13■■■□□ 2.57
LIMD2-209ENST00000580222 CCDC141Q6ZP82 1450 aa31.08■■■□□ 2.57
LIMD2-209ENST00000580222 CEP162Q5TB80 1403 aa31.07■■■□□ 2.57
LIMD2-209ENST00000580222 IQGAP1P46940 1657 aa31.06■■■□□ 2.56
LIMD2-209ENST00000580222 EHBP1L1Q8N3D4 1523 aa31.03■■■□□ 2.56
LIMD2-209ENST00000580222 CAMSAP2Q08AD1 1489 aa31.01■■■□□ 2.56
LIMD2-209ENST00000580222 RNF17Q9BXT8 1623 aaKnown RBP30.99■■■□□ 2.55
LIMD2-209ENST00000580222 LTKP29376 864 aa30.99■■■□□ 2.55
LIMD2-209ENST00000580222 RSPH4AQ5TD94 716 aa30.99■■■□□ 2.55
LIMD2-209ENST00000580222 POTEAQ6S8J7 498 aa30.97■■■□□ 2.55
LIMD2-209ENST00000580222 ABCC3O15438 1527 aa30.96■■■□□ 2.55
LIMD2-209ENST00000580222 ERVK-7P63135 1459 aa30.95■■■□□ 2.55
LIMD2-209ENST00000580222 NCOA2Q15596 1464 aa30.95■■■□□ 2.54
LIMD2-209ENST00000580222 SYNMO15061 1565 aa30.94■■■□□ 2.54
LIMD2-209ENST00000580222 ZC3H13Q5T200 1668 aaKnown RBP30.93■■■□□ 2.54
LIMD2-209ENST00000580222 TSPY4P0CV99 314 aa30.92■■■□□ 2.54
LIMD2-209ENST00000580222 TSPY10P0CW01 314 aa30.92■■■□□ 2.54
LIMD2-209ENST00000580222 TXNDC2Q86VQ3 553 aa30.89■■■□□ 2.54
LIMD2-209ENST00000580222 SCAF11Q99590 1463 aaKnown RBP30.89■■■□□ 2.53
LIMD2-209ENST00000580222 ARHGEF5Q12774 1597 aa30.86■■■□□ 2.53
LIMD2-209ENST00000580222 ARHGAP23Q9P227 1491 aa30.84■■■□□ 2.53
LIMD2-209ENST00000580222 FAM135BQ49AJ0 1406 aa30.83■■■□□ 2.53
LIMD2-209ENST00000580222 MROH1Q8NDA8 1641 aa30.83■■■□□ 2.53
LIMD2-209ENST00000580222 UBR1Q8IWV7 1749 aa30.82■■■□□ 2.52
LIMD2-209ENST00000580222 XIRP1Q702N8 1843 aaKnown RBP30.81■■■□□ 2.52
LIMD2-209ENST00000580222 SLIT1O75093 1534 aa30.79■■■□□ 2.52
LIMD2-209ENST00000580222 RBM33Q96EV2 1170 aaKnown RBP30.79■■■□□ 2.52
LIMD2-209ENST00000580222 TMEM94Q12767 1356 aa30.76■■■□□ 2.51
LIMD2-209ENST00000580222 MAST1Q9Y2H9 1570 aa30.72■■■□□ 2.51
LIMD2-209ENST00000580222 EID1Q9Y6B2 187 aa30.72■■■□□ 2.51
LIMD2-209ENST00000580222 CEP152O94986 1710 aa30.7■■■□□ 2.51
LIMD2-209ENST00000580222 TMEM2Q9UHN6 1383 aa30.7■■■□□ 2.51
LIMD2-209ENST00000580222 CFAP65Q6ZU64 1925 aaKnown RBP30.69■■■□□ 2.5
LIMD2-209ENST00000580222 EIF2AK4Q9P2K8 1649 aaKnown RBP30.68■■■□□ 2.5
LIMD2-209ENST00000580222 ARHGAP31Q2M1Z3 1444 aa30.67■■■□□ 2.5
LIMD2-209ENST00000580222 KCNA6P17658 529 aa30.67■■■□□ 2.5
LIMD2-209ENST00000580222 SLC26A8Q96RN1 970 aa30.67■■■□□ 2.5
LIMD2-209ENST00000580222 PROSER2Q86WR7 435 aaPredicted RBP30.66■■■□□ 2.5
LIMD2-209ENST00000580222 MAP3K1Q13233 1512 aa30.65■■■□□ 2.5
LIMD2-209ENST00000580222 ROBO1Q9Y6N7 1651 aa30.62■■■□□ 2.49
LIMD2-209ENST00000580222 LOC105371045A0A1W2PR82 267 aa30.62■■■□□ 2.49
LIMD2-209ENST00000580222 IDI1Q13907 227 aa30.61■■■□□ 2.49
LIMD2-209ENST00000580222 KANK4Q5T7N3 995 aaPredicted RBP30.61■■■□□ 2.49
LIMD2-209ENST00000580222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.61■■■□□ 2.49
LIMD2-209ENST00000580222 PIK3C2BO00750 1634 aa30.61■■■□□ 2.49
LIMD2-209ENST00000580222 LRRC9Q6ZRR7 1453 aa30.6■■■□□ 2.49
LIMD2-209ENST00000580222 DUOX2Q9NRD8 1548 aa30.59■■■□□ 2.49
LIMD2-209ENST00000580222 SETD1AO15047 1707 aaKnown RBP30.59■■■□□ 2.49
LIMD2-209ENST00000580222 STAG3Q9UJ98 1225 aa30.58■■■□□ 2.49
LIMD2-209ENST00000580222 TET3O43151 1660 aa30.58■■■□□ 2.49
LIMD2-209ENST00000580222 RRP7BPQ9NSQ0 103 aa30.57■■■□□ 2.48
LIMD2-209ENST00000580222 KIF15Q9NS87 1388 aa30.55■■■□□ 2.48
LIMD2-209ENST00000580222 SLAIN2Q9P270 581 aa30.55■■■□□ 2.48
LIMD2-209ENST00000580222 PRDM15P57071 1507 aaPredicted RBP30.55■■■□□ 2.48
LIMD2-209ENST00000580222 MYOM3Q5VTT5 1437 aa30.52■■■□□ 2.48
LIMD2-209ENST00000580222 EFCAB6Q5THR3 1501 aa30.52■■■□□ 2.48
LIMD2-209ENST00000580222 JCADQ9P266 1359 aa30.5■■■□□ 2.47
LIMD2-209ENST00000580222 UPF1Q92900 1129 aaKnown RBP eCLIP30.49■■■□□ 2.472e-6■■□□□ 12.9
LIMD2-209ENST00000580222 ABCC5O15440 1437 aa30.48■■■□□ 2.47
LIMD2-209ENST00000580222 ERBINQ96RT1 1412 aa30.47■■■□□ 2.47
LIMD2-209ENST00000580222 MSH6P52701 1360 aa30.46■■■□□ 2.47
LIMD2-209ENST00000580222 LRP6O75581 1613 aa30.44■■■□□ 2.46
LIMD2-209ENST00000580222 NKTRP30414 1462 aaKnown RBP30.44■■■□□ 2.46
LIMD2-209ENST00000580222 NWD1Q149M9 1564 aa30.43■■■□□ 2.46
LIMD2-209ENST00000580222 TRIM52Q96A61 297 aa30.41■■■□□ 2.46
LIMD2-209ENST00000580222 BCANQ96GW7 911 aa30.41■■■□□ 2.46
LIMD2-209ENST00000580222 PHLPP1O60346 1717 aa30.41■■■□□ 2.46
LIMD2-209ENST00000580222 NOS1P29475 1434 aa30.4■■■□□ 2.46
LIMD2-209ENST00000580222 KANK1Q14678 1352 aa30.39■■■□□ 2.45
LIMD2-209ENST00000580222 VPS8Q8N3P4 1428 aa30.39■■■□□ 2.45
LIMD2-209ENST00000580222 KDM5AP29375 1690 aaKnown RBP30.38■■■□□ 2.45
LIMD2-209ENST00000580222 LMTK2Q8IWU2 1503 aa30.37■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms