RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 UNC13BO14795 1591 aa36.88■■■■□ 3.49
SHMT1-207ENST00000580002 ATP10AO60312 1499 aa36.87■■■■□ 3.49
SHMT1-207ENST00000580002 SIN3AQ96ST3 1273 aa36.85■■■■□ 3.49
SHMT1-207ENST00000580002 KDM5DQ9BY66 1539 aa36.84■■■■□ 3.49
SHMT1-207ENST00000580002 PKD2Q13563 968 aa36.84■■■■□ 3.49
SHMT1-207ENST00000580002 ACIN1Q9UKV3 1341 aaKnown RBP36.84■■■■□ 3.49
SHMT1-207ENST00000580002 GGT6Q6P531 493 aa36.83■■■■□ 3.49
SHMT1-207ENST00000580002 FAM135AQ9P2D6 1515 aa36.81■■■■□ 3.48
SHMT1-207ENST00000580002 EIF2AK4Q9P2K8 1649 aaKnown RBP36.81■■■■□ 3.48
SHMT1-207ENST00000580002 MROH1Q8NDA8 1641 aa36.8■■■■□ 3.48
SHMT1-207ENST00000580002 SIGLEC1Q9BZZ2 1709 aa36.79■■■■□ 3.48
SHMT1-207ENST00000580002 CLSPNQ9HAW4 1339 aa36.78■■■■□ 3.48
SHMT1-207ENST00000580002 ARHGEF40Q8TER5 1519 aa36.78■■■■□ 3.48
SHMT1-207ENST00000580002 DEPDC5O75140 1603 aa36.77■■■■□ 3.48
SHMT1-207ENST00000580002 NEUROD1Q13562 356 aa36.74■■■■□ 3.47
SHMT1-207ENST00000580002 IQGAP3Q86VI3 1631 aa36.73■■■■□ 3.47
SHMT1-207ENST00000580002 RNF17Q9BXT8 1623 aaKnown RBP36.7■■■■□ 3.46
SHMT1-207ENST00000580002 PRDM15P57071 1507 aaPredicted RBP36.69■■■■□ 3.46
SHMT1-207ENST00000580002 ANKRD30BQ9BXX2 1392 aa36.69■■■■□ 3.46
SHMT1-207ENST00000580002 VWDEQ8N2E2 1590 aa36.69■■■■□ 3.46
SHMT1-207ENST00000580002 BCORL1Q5H9F3 1711 aa36.68■■■■□ 3.46
SHMT1-207ENST00000580002 REREQ9P2R6 1566 aa36.67■■■■□ 3.46
SHMT1-207ENST00000580002 MLECQ14165 292 aa36.66■■■■□ 3.46
SHMT1-207ENST00000580002 KANK1Q14678 1352 aa36.66■■■■□ 3.46
SHMT1-207ENST00000580002 ZEB1P37275 1124 aaPredicted RBP36.66■■■■□ 3.46
SHMT1-207ENST00000580002 AGLP35573 1532 aa36.62■■■■□ 3.45
SHMT1-207ENST00000580002 WASHC2CQ9Y4E1 1318 aa36.59■■■■□ 3.45
SHMT1-207ENST00000580002 ARID4BQ4LE39 1312 aaPredicted RBP36.59■■■■□ 3.45
SHMT1-207ENST00000580002 CEP152O94986 1710 aa36.57■■■■□ 3.44
SHMT1-207ENST00000580002 PLA2R1Q13018 1463 aa36.54■■■■□ 3.44
SHMT1-207ENST00000580002 ABCC3O15438 1527 aa36.53■■■■□ 3.44
SHMT1-207ENST00000580002 E9PCH4 1651 aa36.53■■■■□ 3.44
SHMT1-207ENST00000580002 TET3O43151 1660 aa36.51■■■■□ 3.44
SHMT1-207ENST00000580002 LMTK2Q8IWU2 1503 aa36.51■■■■□ 3.43
SHMT1-207ENST00000580002 EFCAB6Q5THR3 1501 aa36.45■■■■□ 3.43
SHMT1-207ENST00000580002 NPATQ14207 1427 aa36.42■■■■□ 3.42
SHMT1-207ENST00000580002 RPRD2Q5VT52 1461 aaKnown RBP36.4■■■■□ 3.42
SHMT1-207ENST00000580002 CAMSAP1Q5T5Y3 1602 aa36.38■■■■□ 3.41
SHMT1-207ENST00000580002 PTPRTO14522 1441 aa36.37■■■■□ 3.41
SHMT1-207ENST00000580002 CFAP65Q6ZU64 1925 aaKnown RBP36.37■■■■□ 3.41
SHMT1-207ENST00000580002 PPP6R1Q9UPN7 881 aa36.36■■■■□ 3.41
SHMT1-207ENST00000580002 TONSLQ96HA7 1378 aa36.33■■■■□ 3.41
SHMT1-207ENST00000580002 CLTCQ00610 1675 aaKnown RBP36.33■■■■□ 3.41
SHMT1-207ENST00000580002 FBXO31Q5XUX0 539 aaPredicted RBP36.32■■■■□ 3.41
SHMT1-207ENST00000580002 ZC3H13Q5T200 1668 aaKnown RBP36.32■■■■□ 3.41
SHMT1-207ENST00000580002 CCDC144AA2RUR9 1427 aa36.32■■■■□ 3.4
SHMT1-207ENST00000580002 L3MBTL2Q969R5 705 aa36.31■■■■□ 3.4
SHMT1-207ENST00000580002 SPHKAPQ2M3C7 1700 aa36.29■■■■□ 3.4
SHMT1-207ENST00000580002 UGGT1Q9NYU2 1555 aa36.28■■■■□ 3.4
SHMT1-207ENST00000580002 ARHGAP31Q2M1Z3 1444 aa36.28■■■■□ 3.4
SHMT1-207ENST00000580002 TRPM2O94759 1503 aa36.27■■■■□ 3.4
SHMT1-207ENST00000580002 ESF1Q9H501 851 aaKnown RBP36.26■■■■□ 3.4
SHMT1-207ENST00000580002 TIMELESSQ9UNS1 1208 aa36.25■■■■□ 3.39
SHMT1-207ENST00000580002 PPP1R15AO75807 674 aaPredicted RBP36.24■■■■□ 3.39
SHMT1-207ENST00000580002 ZMYM3Q14202 1370 aa36.23■■■■□ 3.39
SHMT1-207ENST00000580002 CLTCL1P53675 1640 aa36.23■■■■□ 3.39
SHMT1-207ENST00000580002 RGL3Q3MIN7 710 aa36.22■■■■□ 3.39
SHMT1-207ENST00000580002 NOS1P29475 1434 aa36.22■■■■□ 3.39
SHMT1-207ENST00000580002 CEBPAP49715 358 aaPredicted RBP36.18■■■■□ 3.38
SHMT1-207ENST00000580002 SYNMO15061 1565 aa36.16■■■■□ 3.38
SHMT1-207ENST00000580002 CNTLNQ9NXG0 1405 aa36.15■■■■□ 3.38
SHMT1-207ENST00000580002 PLPPR3Q6T4P5 718 aa36.14■■■■□ 3.38
SHMT1-207ENST00000580002 PREX1Q8TCU6 1659 aa36.13■■■■□ 3.37
SHMT1-207ENST00000580002 ERVK-7P63135 1459 aa36.12■■■■□ 3.37
SHMT1-207ENST00000580002 SPATA31E1Q6ZUB1 1445 aa36.11■■■■□ 3.37
SHMT1-207ENST00000580002 IDI1Q13907 227 aa36.11■■■■□ 3.37
SHMT1-207ENST00000580002 KDM2AQ9Y2K7 1162 aa36.1■■■■□ 3.37
SHMT1-207ENST00000580002 DCAF11Q8TEB1 546 aa36.09■■■■□ 3.37
SHMT1-207ENST00000580002 CHGAP10645 457 aaKnown RBP36.08■■■■□ 3.37
SHMT1-207ENST00000580002 NBPF8Q3BBV2 869 aa36.08■■■■□ 3.37
SHMT1-207ENST00000580002 FER1L4A9Z1Z3 1794 aa36.07■■■■□ 3.36
SHMT1-207ENST00000580002 MADDQ8WXG6 1647 aa36.04■■■■□ 3.36
SHMT1-207ENST00000580002 SPATA31D1Q6ZQQ2 1576 aa36.02■■■■□ 3.36
SHMT1-207ENST00000580002 ZNF326Q5BKZ1 582 aaKnown RBP36.01■■■■□ 3.35
SHMT1-207ENST00000580002 PIK3C2BO00750 1634 aa36.01■■■■□ 3.35
SHMT1-207ENST00000580002 MROH2AA6NES4 1674 aa36■■■■□ 3.35
SHMT1-207ENST00000580002 ADAMTSL3P82987 1691 aa35.99■■■■□ 3.35
SHMT1-207ENST00000580002 SLC52A1Q9NWF4 448 aa35.99■■■■□ 3.35
SHMT1-207ENST00000580002 C3P01024 1663 aa35.97■■■■□ 3.35
SHMT1-207ENST00000580002 RIMS1Q86UR5 1692 aaKnown RBP35.96■■■■□ 3.35
SHMT1-207ENST00000580002 KIF1BO60333 1816 aa35.94■■■■□ 3.34
SHMT1-207ENST00000580002 TNRQ92752 1358 aa35.93■■■■□ 3.34
SHMT1-207ENST00000580002 ADGRB3O60242 1522 aa35.93■■■■□ 3.34
SHMT1-207ENST00000580002 NUTM2DQ5VT03 806 aaPredicted RBP35.87■■■■□ 3.33
SHMT1-207ENST00000580002 UHRF1BP1Q6BDS2 1440 aa35.84■■■■□ 3.33
SHMT1-207ENST00000580002 NEURL4Q96JN8 1562 aa35.84■■■■□ 3.33
SHMT1-207ENST00000580002 TMEM131LA2VDJ0 1609 aa35.83■■■■□ 3.33
SHMT1-207ENST00000580002 STAG3Q9UJ98 1225 aa35.82■■■■□ 3.33
SHMT1-207ENST00000580002 MYO5BQ9ULV0 1848 aa35.82■■■■□ 3.32
SHMT1-207ENST00000580002 ADGRF5Q8IZF2 1346 aa35.82■■■■□ 3.32
SHMT1-207ENST00000580002 PRAG1Q86YV5 1406 aa35.82■■■■□ 3.32
SHMT1-207ENST00000580002 A2ML1A8K2U0 1454 aa35.77■■■■□ 3.32
SHMT1-207ENST00000580002 SENP3Q9H4L4 574 aaPredicted RBP35.76■■■■□ 3.31
SHMT1-207ENST00000580002 HIRIP3Q9BW71 556 aaPredicted RBP35.75■■■■□ 3.31
SHMT1-207ENST00000580002 NBPF1Q3BBV0 1214 aa35.74■■■■□ 3.31
SHMT1-207ENST00000580002 KDM4FA0A1W2PPD8 638 aa35.74■■■■□ 3.31
SHMT1-207ENST00000580002 PTPRMP28827 1452 aa35.73■■■■□ 3.31
SHMT1-207ENST00000580002 IFT172Q9UG01 1749 aa35.73■■■■□ 3.31
SHMT1-207ENST00000580002 RPGRIP1LQ68CZ1 1315 aa35.72■■■■□ 3.31
SHMT1-207ENST00000580002 NEXMIFQ5QGS0 1516 aa35.72■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms