RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 MROH2AA6NES4 1674 aa12.12□□□□□ -0.47
CCDC40-215ENST00000576033 PRDM15P57071 1507 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-215ENST00000576033 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC40-215ENST00000576033 RSPH4AQ5TD94 716 aa12.11□□□□□ -0.47
CCDC40-215ENST00000576033 GGT6Q6P531 493 aa12.11□□□□□ -0.47
CCDC40-215ENST00000576033 CAMSAP1Q5T5Y3 1602 aa12.11□□□□□ -0.47
CCDC40-215ENST00000576033 ABCC3O15438 1527 aa12.11□□□□□ -0.47
CCDC40-215ENST00000576033 ERBINQ96RT1 1412 aa12.11□□□□□ -0.47
CCDC40-215ENST00000576033 ANKRD30AQ9BXX3 1397 aa12.1□□□□□ -0.47
CCDC40-215ENST00000576033 KIF3BO15066 747 aa12.1□□□□□ -0.47
CCDC40-215ENST00000576033 CEBPAP49715 358 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-215ENST00000576033 KDM5DQ9BY66 1539 aa12.1□□□□□ -0.47
CCDC40-215ENST00000576033 UNC13BO14795 1591 aa12.09□□□□□ -0.47
CCDC40-215ENST00000576033 ZC3H13Q5T200 1668 aaKnown RBP12.09□□□□□ -0.47
CCDC40-215ENST00000576033 VWDEQ8N2E2 1590 aa12.07□□□□□ -0.48
CCDC40-215ENST00000576033 ROCK1Q13464 1354 aa12.06□□□□□ -0.48
CCDC40-215ENST00000576033 NAIPQ13075 1403 aa12.06□□□□□ -0.48
CCDC40-215ENST00000576033 ANKRD50Q9ULJ7 1429 aa12.06□□□□□ -0.48
CCDC40-215ENST00000576033 CFAP65Q6ZU64 1925 aaKnown RBP12.05□□□□□ -0.48
CCDC40-215ENST00000576033 MYO3AQ8NEV4 1616 aa12.05□□□□□ -0.48
CCDC40-215ENST00000576033 PREX1Q8TCU6 1659 aa12.05□□□□□ -0.48
CCDC40-215ENST00000576033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC40-215ENST00000576033 LMTK3Q96Q04 1460 aa12.03□□□□□ -0.48
CCDC40-215ENST00000576033 IQGAP3Q86VI3 1631 aa12.03□□□□□ -0.48
CCDC40-215ENST00000576033 EFCAB6Q5THR3 1501 aa12.02□□□□□ -0.48
CCDC40-215ENST00000576033 E9PCH4 1651 aa12.02□□□□□ -0.49
CCDC40-215ENST00000576033 ZMYM3Q14202 1370 aa12.02□□□□□ -0.49
CCDC40-215ENST00000576033 HFM1A2PYH4 1435 aa12.02□□□□□ -0.49
CCDC40-215ENST00000576033 CNTLNQ9NXG0 1405 aa12.02□□□□□ -0.49
CCDC40-215ENST00000576033 TET3O43151 1660 aa12□□□□□ -0.49
CCDC40-215ENST00000576033 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
CCDC40-215ENST00000576033 PZPP20742 1482 aa12□□□□□ -0.49
CCDC40-215ENST00000576033 FAM135AQ9P2D6 1515 aa12□□□□□ -0.49
CCDC40-215ENST00000576033 SYNMO15061 1565 aa12□□□□□ -0.49
CCDC40-215ENST00000576033 ZNF142P52746 1687 aaPredicted RBP12□□□□□ -0.49
CCDC40-215ENST00000576033 WASHC2CQ9Y4E1 1318 aa11.99□□□□□ -0.49
CCDC40-215ENST00000576033 ERVK-7P63135 1459 aa11.99□□□□□ -0.49
CCDC40-215ENST00000576033 LMTK2Q8IWU2 1503 aa11.99□□□□□ -0.49
CCDC40-215ENST00000576033 SPATA31D1Q6ZQQ2 1576 aa11.98□□□□□ -0.49
CCDC40-215ENST00000576033 UGGT1Q9NYU2 1555 aa11.98□□□□□ -0.49
CCDC40-215ENST00000576033 NPATQ14207 1427 aa11.98□□□□□ -0.49
CCDC40-215ENST00000576033 ESF1Q9H501 851 aaKnown RBP11.98□□□□□ -0.49
CCDC40-215ENST00000576033 CEP170BQ9Y4F5 1589 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-215ENST00000576033 HSPA2P54652 639 aa11.96□□□□□ -0.49
CCDC40-215ENST00000576033 PIK3C2BO00750 1634 aa11.94□□□□□ -0.5
CCDC40-215ENST00000576033 MYO5BQ9ULV0 1848 aa11.94□□□□□ -0.5
CCDC40-215ENST00000576033 SPHKAPQ2M3C7 1700 aa11.94□□□□□ -0.5
CCDC40-215ENST00000576033 UHRF1BP1Q6BDS2 1440 aa11.94□□□□□ -0.5
CCDC40-215ENST00000576033 NUP155O75694 1391 aa11.93□□□□□ -0.5
CCDC40-215ENST00000576033 KANK1Q14678 1352 aa11.93□□□□□ -0.5
CCDC40-215ENST00000576033 STRCQ7RTU9 1775 aa11.93□□□□□ -0.5
CCDC40-215ENST00000576033 UBR1Q8IWV7 1749 aa11.93□□□□□ -0.5
CCDC40-215ENST00000576033 TNRQ92752 1358 aa11.92□□□□□ -0.5
CCDC40-215ENST00000576033 RAB3GAP2Q9H2M9 1393 aa11.92□□□□□ -0.5
CCDC40-215ENST00000576033 ARHGAP31Q2M1Z3 1444 aa11.91□□□□□ -0.5
CCDC40-215ENST00000576033 SETD5Q9C0A6 1442 aa11.91□□□□□ -0.5
CCDC40-215ENST00000576033 CLTCL1P53675 1640 aa11.9□□□□□ -0.5
CCDC40-215ENST00000576033 PPP6R1Q9UPN7 881 aa11.9□□□□□ -0.5
CCDC40-215ENST00000576033 SETD1BQ9UPS6 1966 aaKnown RBP11.89□□□□□ -0.51
CCDC40-215ENST00000576033 NOS1P29475 1434 aa11.89□□□□□ -0.51
CCDC40-215ENST00000576033 FOXD1Q16676 465 aa11.89□□□□□ -0.51
CCDC40-215ENST00000576033 A2ML1A8K2U0 1454 aa11.89□□□□□ -0.51
CCDC40-215ENST00000576033 POLR1AO95602 1720 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-215ENST00000576033 TRIM52Q96A61 297 aa11.87□□□□□ -0.51
CCDC40-215ENST00000576033 RPRD2Q5VT52 1461 aaKnown RBP11.87□□□□□ -0.51
CCDC40-215ENST00000576033 NEURL4Q96JN8 1562 aa11.87□□□□□ -0.51
CCDC40-215ENST00000576033 ADGRB3O60242 1522 aa11.86□□□□□ -0.51
CCDC40-215ENST00000576033 PLA2R1Q13018 1463 aa11.86□□□□□ -0.51
CCDC40-215ENST00000576033 TRPM2O94759 1503 aa11.86□□□□□ -0.51
CCDC40-215ENST00000576033 NLRP1Q9C000 1473 aa11.85□□□□□ -0.51
CCDC40-215ENST00000576033 TMEM131LA2VDJ0 1609 aa11.85□□□□□ -0.51
CCDC40-215ENST00000576033 TRIM26Q12899 539 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-215ENST00000576033 PKD2Q13563 968 aa11.82□□□□□ -0.52
CCDC40-215ENST00000576033 PTPRTO14522 1441 aa11.82□□□□□ -0.52
CCDC40-215ENST00000576033 NCKAP5LQ9HCH0 1330 aa11.82□□□□□ -0.52
CCDC40-215ENST00000576033 IDI1Q13907 227 aa11.81□□□□□ -0.52
CCDC40-215ENST00000576033 SLC4A1APQ9BWU0 796 aaKnown RBP11.81□□□□□ -0.52
CCDC40-215ENST00000576033 SENP3Q9H4L4 574 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-215ENST00000576033 KDM5AP29375 1690 aaKnown RBP11.81□□□□□ -0.52
CCDC40-215ENST00000576033 KIF1BO60333 1816 aa11.8□□□□□ -0.52
CCDC40-215ENST00000576033 IQGAP1P46940 1657 aa11.79□□□□□ -0.52
CCDC40-215ENST00000576033 MPHOSPH9Q99550 1183 aa11.79□□□□□ -0.52
CCDC40-215ENST00000576033 ARHGAP23Q9P227 1491 aa11.78□□□□□ -0.52
CCDC40-215ENST00000576033 SLIT1O75093 1534 aa11.78□□□□□ -0.52
CCDC40-215ENST00000576033 PCGF6Q9BYE7 350 aa11.77□□□□□ -0.53
CCDC40-215ENST00000576033 STRCP1A6NGW2 1772 aa11.77□□□□□ -0.53
CCDC40-215ENST00000576033 NEXMIFQ5QGS0 1516 aa11.76□□□□□ -0.53
CCDC40-215ENST00000576033 CHGAP10645 457 aaKnown RBP11.76□□□□□ -0.53
CCDC40-215ENST00000576033 NUTM2DQ5VT03 806 aaPredicted RBP11.76□□□□□ -0.53
CCDC40-215ENST00000576033 IFT172Q9UG01 1749 aa11.76□□□□□ -0.53
CCDC40-215ENST00000576033 ZFYVE9O95405 1425 aa11.76□□□□□ -0.53
CCDC40-215ENST00000576033 LTKP29376 864 aa11.75□□□□□ -0.53
CCDC40-215ENST00000576033 SCAF11Q99590 1463 aaKnown RBP11.75□□□□□ -0.53
CCDC40-215ENST00000576033 NRXN3Q9Y4C0 1643 aa11.75□□□□□ -0.53
CCDC40-215ENST00000576033 PPLO60437 1756 aa11.74□□□□□ -0.53
CCDC40-215ENST00000576033 TMEM2Q9UHN6 1383 aa11.74□□□□□ -0.53
CCDC40-215ENST00000576033 RIMS2Q9UQ26 1411 aa11.73□□□□□ -0.53
CCDC40-215ENST00000576033 NPHP4O75161 1426 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-215ENST00000576033 STAG3Q9UJ98 1225 aa11.72□□□□□ -0.53
CCDC40-215ENST00000576033 MED14O60244 1454 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms