RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 AGLP35573 1532 aa12.91□□□□□ -0.34
NUP88-211ENST00000575976 SENP3Q9H4L4 574 aaPredicted RBP12.9□□□□□ -0.34
NUP88-211ENST00000575976 ANKRD50Q9ULJ7 1429 aa12.89□□□□□ -0.35
NUP88-211ENST00000575976 GGT6Q6P531 493 aa12.89□□□□□ -0.35
NUP88-211ENST00000575976 NAIPQ13075 1403 aa12.88□□□□□ -0.35
NUP88-211ENST00000575976 ERBINQ96RT1 1412 aa12.88□□□□□ -0.35
NUP88-211ENST00000575976 HFM1A2PYH4 1435 aa12.87□□□□□ -0.35
NUP88-211ENST00000575976 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
NUP88-211ENST00000575976 EIF2AK4Q9P2K8 1649 aaKnown RBP12.84□□□□□ -0.35
NUP88-211ENST00000575976 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.84□□□□□ -0.35
NUP88-211ENST00000575976 GCC2Q8IWJ2 1684 aa12.83□□□□□ -0.36
NUP88-211ENST00000575976 SETD5Q9C0A6 1442 aa12.82□□□□□ -0.36
NUP88-211ENST00000575976 MADDQ8WXG6 1647 aa12.82□□□□□ -0.36
NUP88-211ENST00000575976 PPP6R1Q9UPN7 881 aa12.82□□□□□ -0.36
NUP88-211ENST00000575976 SPATA31D1Q6ZQQ2 1576 aa12.81□□□□□ -0.36
NUP88-211ENST00000575976 HSPA2P54652 639 aa12.81□□□□□ -0.36
NUP88-211ENST00000575976 ESF1Q9H501 851 aaKnown RBP12.81□□□□□ -0.36
NUP88-211ENST00000575976 MROH1Q8NDA8 1641 aa12.8□□□□□ -0.36
NUP88-211ENST00000575976 RNF17Q9BXT8 1623 aaKnown RBP12.8□□□□□ -0.36
NUP88-211ENST00000575976 WASHC2CQ9Y4E1 1318 aa12.8□□□□□ -0.36
NUP88-211ENST00000575976 RAB3GAP2Q9H2M9 1393 aa12.8□□□□□ -0.36
NUP88-211ENST00000575976 DEPDC5O75140 1603 aa12.79□□□□□ -0.36
NUP88-211ENST00000575976 KANK1Q14678 1352 aa12.79□□□□□ -0.36
NUP88-211ENST00000575976 PRDM15P57071 1507 aaPredicted RBP12.78□□□□□ -0.36
NUP88-211ENST00000575976 RIMS1Q86UR5 1692 aaKnown RBP12.78□□□□□ -0.36
NUP88-211ENST00000575976 TRIM52Q96A61 297 aa12.78□□□□□ -0.36
NUP88-211ENST00000575976 PCGF6Q9BYE7 350 aa12.78□□□□□ -0.36
NUP88-211ENST00000575976 NUP155O75694 1391 aa12.78□□□□□ -0.36
NUP88-211ENST00000575976 UNC13BO14795 1591 aa12.77□□□□□ -0.36
NUP88-211ENST00000575976 CNTLNQ9NXG0 1405 aa12.77□□□□□ -0.37
NUP88-211ENST00000575976 KDM5DQ9BY66 1539 aa12.77□□□□□ -0.37
NUP88-211ENST00000575976 FER1L4A9Z1Z3 1794 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 CEBPAP49715 358 aaPredicted RBP12.76□□□□□ -0.37
NUP88-211ENST00000575976 PLPPR3Q6T4P5 718 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 DMRT2Q9Y5R5 561 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 ZMYM3Q14202 1370 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 ABCC3O15438 1527 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 VWDEQ8N2E2 1590 aa12.76□□□□□ -0.37
NUP88-211ENST00000575976 HRCP23327 699 aa12.75□□□□□ -0.37
NUP88-211ENST00000575976 CLTCQ00610 1675 aaKnown RBP12.75□□□□□ -0.37
NUP88-211ENST00000575976 FAM135AQ9P2D6 1515 aa12.74□□□□□ -0.37
NUP88-211ENST00000575976 CEP152O94986 1710 aa12.74□□□□□ -0.37
NUP88-211ENST00000575976 LMTK2Q8IWU2 1503 aa12.73□□□□□ -0.37
NUP88-211ENST00000575976 ACIN1Q9UKV3 1341 aaKnown RBP12.72□□□□□ -0.37
NUP88-211ENST00000575976 ZC3H13Q5T200 1668 aaKnown RBP12.72□□□□□ -0.37
NUP88-211ENST00000575976 IQGAP3Q86VI3 1631 aa12.72□□□□□ -0.37
NUP88-211ENST00000575976 PZPP20742 1482 aa12.72□□□□□ -0.37
NUP88-211ENST00000575976 MROH2AA6NES4 1674 aa12.71□□□□□ -0.37
NUP88-211ENST00000575976 FBXO31Q5XUX0 539 aaPredicted RBP12.71□□□□□ -0.37
NUP88-211ENST00000575976 SLC4A1APQ9BWU0 796 aaKnown RBP12.71□□□□□ -0.37
NUP88-211ENST00000575976 MPHOSPH9Q99550 1183 aa12.7□□□□□ -0.38
NUP88-211ENST00000575976 C3P01024 1663 aa12.7□□□□□ -0.38
NUP88-211ENST00000575976 NPATQ14207 1427 aa12.7□□□□□ -0.38
NUP88-211ENST00000575976 ARHGAP31Q2M1Z3 1444 aa12.7□□□□□ -0.38
NUP88-211ENST00000575976 CAMSAP1Q5T5Y3 1602 aa12.7□□□□□ -0.38
NUP88-211ENST00000575976 PHF23Q9BUL5 403 aaPredicted RBP12.69□□□□□ -0.38
NUP88-211ENST00000575976 EFCAB6Q5THR3 1501 aa12.68□□□□□ -0.38
NUP88-211ENST00000575976 TET3O43151 1660 aa12.68□□□□□ -0.38
NUP88-211ENST00000575976 PKD2Q13563 968 aa12.68□□□□□ -0.38
NUP88-211ENST00000575976 FOXD1Q16676 465 aa12.66□□□□□ -0.38
NUP88-211ENST00000575976 PREX1Q8TCU6 1659 aa12.66□□□□□ -0.38
NUP88-211ENST00000575976 ERVK-7P63135 1459 aa12.65□□□□□ -0.38
NUP88-211ENST00000575976 E9PCH4 1651 aa12.65□□□□□ -0.38
NUP88-211ENST00000575976 RPRD2Q5VT52 1461 aaKnown RBP12.65□□□□□ -0.38
NUP88-211ENST00000575976 TNRQ92752 1358 aa12.64□□□□□ -0.39
NUP88-211ENST00000575976 NOS1P29475 1434 aa12.63□□□□□ -0.39
NUP88-211ENST00000575976 CFAP65Q6ZU64 1925 aaKnown RBP12.62□□□□□ -0.39
NUP88-211ENST00000575976 SETD1BQ9UPS6 1966 aaKnown RBP12.61□□□□□ -0.39
NUP88-211ENST00000575976 PTPRTO14522 1441 aa12.61□□□□□ -0.39
NUP88-211ENST00000575976 PLA2R1Q13018 1463 aa12.6□□□□□ -0.39
NUP88-211ENST00000575976 IDI1Q13907 227 aa12.6□□□□□ -0.39
NUP88-211ENST00000575976 SYNMO15061 1565 aa12.6□□□□□ -0.39
NUP88-211ENST00000575976 DHX57Q6P158 1386 aaKnown RBP12.59□□□□□ -0.39
NUP88-211ENST00000575976 SLC52A1Q9NWF4 448 aa12.59□□□□□ -0.39
NUP88-211ENST00000575976 UHRF1BP1Q6BDS2 1440 aa12.59□□□□□ -0.39
NUP88-211ENST00000575976 IQSEC2Q5JU85 1478 aa12.59□□□□□ -0.39
NUP88-211ENST00000575976 STRCQ7RTU9 1775 aa12.58□□□□□ -0.39
NUP88-211ENST00000575976 UGGT1Q9NYU2 1555 aa12.57□□□□□ -0.4
NUP88-211ENST00000575976 NLRP1Q9C000 1473 aa12.57□□□□□ -0.4
NUP88-211ENST00000575976 SPHKAPQ2M3C7 1700 aa12.57□□□□□ -0.4
NUP88-211ENST00000575976 ANKRD30BQ9BXX2 1392 aa12.56□□□□□ -0.4
NUP88-211ENST00000575976 MYO3AQ8NEV4 1616 aa12.56□□□□□ -0.4
NUP88-211ENST00000575976 TRPM2O94759 1503 aa12.56□□□□□ -0.4
NUP88-211ENST00000575976 A2ML1A8K2U0 1454 aa12.55□□□□□ -0.4
NUP88-211ENST00000575976 CHGAP10645 457 aaKnown RBP12.55□□□□□ -0.4
NUP88-211ENST00000575976 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
NUP88-211ENST00000575976 CEP170BQ9Y4F5 1589 aaPredicted RBP12.54□□□□□ -0.4
NUP88-211ENST00000575976 PIK3C2BO00750 1634 aa12.54□□□□□ -0.4
NUP88-211ENST00000575976 CLTCL1P53675 1640 aa12.53□□□□□ -0.4
NUP88-211ENST00000575976 CCDC144AA2RUR9 1427 aa12.53□□□□□ -0.4
NUP88-211ENST00000575976 THEMISQ8N1K5 641 aaPredicted RBP12.52□□□□□ -0.41
NUP88-211ENST00000575976 ZNF142P52746 1687 aaPredicted RBP12.51□□□□□ -0.41
NUP88-211ENST00000575976 SIN3AQ96ST3 1273 aa12.51□□□□□ -0.41
NUP88-211ENST00000575976 ADGRB3O60242 1522 aa12.5□□□□□ -0.41
NUP88-211ENST00000575976 UBR1Q8IWV7 1749 aa12.49□□□□□ -0.41
NUP88-211ENST00000575976 TMEM131LA2VDJ0 1609 aa12.49□□□□□ -0.41
NUP88-211ENST00000575976 LTBP4Q8N2S1 1624 aa12.49□□□□□ -0.41
NUP88-211ENST00000575976 RGL3Q3MIN7 710 aa12.48□□□□□ -0.41
NUP88-211ENST00000575976 ZNF326Q5BKZ1 582 aaKnown RBP12.48□□□□□ -0.41
NUP88-211ENST00000575976 CCER1Q8TC90 406 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms