RNA–Protein interactions for RNA: ENST00000575815.5

NCBP3-205, Transcript of nuclear cap binding subunit 3, human

TSL 2

Gene NCBP3, Length 4,096 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCBP3-205	ENST00000575815	TRAPPC8	Q9Y2L5	1435 aa		11.28	□□□□□ -0.6
NCBP3-205	ENST00000575815	WDR7	Q9Y4E6	1490 aa		11.28	□□□□□ -0.6
NCBP3-205	ENST00000575815	LMOD2	Q6P5Q4	547 aa		11.28	□□□□□ -0.6
NCBP3-205	ENST00000575815	KIAA1107	Q9UPP5	1409 aa		11.28	□□□□□ -0.6
NCBP3-205	ENST00000575815	VGF	O15240	615 aa	Predicted RBP	11.28	□□□□□ -0.6
NCBP3-205	ENST00000575815	USP47	Q96K76	1375 aa		11.27	□□□□□ -0.61
NCBP3-205	ENST00000575815	EID1	Q9Y6B2	187 aa		11.26	□□□□□ -0.61
NCBP3-205	ENST00000575815	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.25	□□□□□ -0.61
NCBP3-205	ENST00000575815	SYCP2	Q9BX26	1530 aa		11.25	□□□□□ -0.61
NCBP3-205	ENST00000575815	CEBPA	P49715	358 aa	Predicted RBP	11.24	□□□□□ -0.61
NCBP3-205	ENST00000575815	NEUROD2	Q15784	382 aa		11.24	□□□□□ -0.61
NCBP3-205	ENST00000575815	ANKRD30B	Q9BXX2	1392 aa		11.24	□□□□□ -0.61
NCBP3-205	ENST00000575815	CFAP43	Q8NDM7	1665 aa		11.23	□□□□□ -0.61
NCBP3-205	ENST00000575815	IRX6	P78412	446 aa	Predicted RBP	11.23	□□□□□ -0.61
NCBP3-205	ENST00000575815	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.23	□□□□□ -0.61
NCBP3-205	ENST00000575815	DENND4B	O75064	1496 aa	Predicted RBP	11.22	□□□□□ -0.61
NCBP3-205	ENST00000575815	FKBP8	Q14318	412 aa		11.22	□□□□□ -0.61
NCBP3-205	ENST00000575815	BCL11A	Q9H165	835 aa		11.22	□□□□□ -0.61
NCBP3-205	ENST00000575815	PANK3	Q9H999	370 aa		11.21	□□□□□ -0.61
NCBP3-205	ENST00000575815	IDI1	Q13907	227 aa		11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	DHX29	Q7Z478	1369 aa	Known RBP	11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	CANX	P27824	592 aa	Known RBP	11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	MORC1	Q86VD1	984 aa		11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	KIF7	Q2M1P5	1343 aa		11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	WASHC2A	Q641Q2	1341 aa		11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	ABCA8	O94911	1581 aa		11.19	□□□□□ -0.62
NCBP3-205	ENST00000575815	U2SURP	O15042	1029 aa	Known RBP	11.18	□□□□□ -0.62
NCBP3-205	ENST00000575815	TCOF1	Q13428	1488 aa	Known RBP	11.18	□□□□□ -0.62
NCBP3-205	ENST00000575815	TXNDC2	Q86VQ3	553 aa		11.17	□□□□□ -0.62
NCBP3-205	ENST00000575815	SLC26A8	Q96RN1	970 aa		11.17	□□□□□ -0.62
NCBP3-205	ENST00000575815	SLC52A1	Q9NWF4	448 aa		11.17	□□□□□ -0.62
NCBP3-205	ENST00000575815	PAK3	O75914	559 aa	Predicted RBP	11.16	□□□□□ -0.62
NCBP3-205	ENST00000575815	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
NCBP3-205	ENST00000575815	EIF3A	Q14152	1382 aa	Known RBP	11.16	□□□□□ -0.62
NCBP3-205	ENST00000575815	CFAP53	Q96M91	514 aa		11.16	□□□□□ -0.62
NCBP3-205	ENST00000575815	C11orf95	C9JLR9	678 aa	Predicted RBP	11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	KDM5B	Q9UGL1	1544 aa		11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	KTN1	Q86UP2	1357 aa	Known RBP	11.14	□□□□□ -0.63
NCBP3-205	ENST00000575815	ADGRF5	Q8IZF2	1346 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	ERBIN	Q96RT1	1412 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	CABP2	Q9NPB3	220 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	ITSN2	Q9NZM3	1697 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	CCDC7	Q96M83	1385 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	CCER2	I3L3R5	266 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	HAP1	P54257	671 aa	Predicted RBP	11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	MAPKBP1	O60336	1514 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	ABCC10	Q5T3U5	1492 aa		11.13	□□□□□ -0.63
NCBP3-205	ENST00000575815	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.12	□□□□□ -0.63
NCBP3-205	ENST00000575815	NGDN	Q8NEJ9	315 aa	Known RBP	11.12	□□□□□ -0.63
NCBP3-205	ENST00000575815	ZNF518A	Q6AHZ1	1483 aa		11.12	□□□□□ -0.63
NCBP3-205	ENST00000575815	A2M	P01023	1474 aa		11.11	□□□□□ -0.63
NCBP3-205	ENST00000575815	PRAM1	Q96QH2	718 aa		11.11	□□□□□ -0.63
NCBP3-205	ENST00000575815	STAC3	Q96MF2	364 aa		11.1	□□□□□ -0.63
NCBP3-205	ENST00000575815	EVC2	Q86UK5	1308 aa		11.1	□□□□□ -0.63
NCBP3-205	ENST00000575815	TERF2IP	Q9NYB0	399 aa		11.1	□□□□□ -0.63
NCBP3-205	ENST00000575815	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
NCBP3-205	ENST00000575815	SLC12A5	Q9H2X9	1139 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	MBD5	Q9P267	1494 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	UHRF1BP1L	A0JNW5	1464 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	RPRD2	Q5VT52	1461 aa	Known RBP	11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815		A0A0G2JS52	829 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	RALBP1	Q15311	655 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	NUDC	Q9Y266	331 aa		11.09	□□□□□ -0.63
NCBP3-205	ENST00000575815	LAS1L	Q9Y4W2	734 aa	Known RBP	11.08	□□□□□ -0.64
NCBP3-205	ENST00000575815	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.08	□□□□□ -0.64
NCBP3-205	ENST00000575815	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.08	□□□□□ -0.64	8e-6	■□□□□ 10.6
NCBP3-205	ENST00000575815	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.08	□□□□□ -0.64
NCBP3-205	ENST00000575815	RBM33	Q96EV2	1170 aa	Known RBP	11.08	□□□□□ -0.64
NCBP3-205	ENST00000575815	DNMT1	P26358	1616 aa	Known RBP	11.07	□□□□□ -0.64
NCBP3-205	ENST00000575815	NLRP13	Q86W25	1043 aa		11.07	□□□□□ -0.64
NCBP3-205	ENST00000575815	CCDC146	Q8IYE0	955 aa		11.07	□□□□□ -0.64
NCBP3-205	ENST00000575815	TTC37	Q6PGP7	1564 aa		11.07	□□□□□ -0.64
NCBP3-205	ENST00000575815	DUOX2	Q9NRD8	1548 aa		11.07	□□□□□ -0.64
NCBP3-205	ENST00000575815	WAPL	Q7Z5K2	1190 aa		11.06	□□□□□ -0.64
NCBP3-205	ENST00000575815	CFAP65	Q6ZU64	1925 aa	Known RBP	11.06	□□□□□ -0.64
NCBP3-205	ENST00000575815	MAPK8IP3	Q9UPT6	1336 aa		11.06	□□□□□ -0.64
NCBP3-205	ENST00000575815	TEX14	Q8IWB6	1497 aa		11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	POGZ	Q7Z3K3	1410 aa		11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	PZP	P20742	1482 aa		11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	GGNBP2	Q9H3C7	697 aa		11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	FAM135A	Q9P2D6	1515 aa		11.05	□□□□□ -0.64
NCBP3-205	ENST00000575815	CLASP1	Q7Z460	1538 aa		11.04	□□□□□ -0.64
NCBP3-205	ENST00000575815	YEATS2	Q9ULM3	1422 aa		11.04	□□□□□ -0.64
NCBP3-205	ENST00000575815	SHANK2	Q9UPX8	1470 aa		11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	CCDC184	Q52MB2	194 aa		11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	LTV1	Q96GA3	475 aa	Predicted RBP	11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	ARHGEF12	Q9NZN5	1544 aa		11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	NOS1	P29475	1434 aa		11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	PMFBP1	Q8TBY8	1022 aa		11.03	□□□□□ -0.64
NCBP3-205	ENST00000575815	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.02	□□□□□ -0.64
NCBP3-205	ENST00000575815	NUTM2G	Q5VZR2	741 aa		11.02	□□□□□ -0.64
NCBP3-205	ENST00000575815	ERICH6	Q7L0X2	663 aa		11.02	□□□□□ -0.64
NCBP3-205	ENST00000575815	KDM6B	O15054	1643 aa		11.02	□□□□□ -0.65
NCBP3-205	ENST00000575815	RPGRIP1L	Q68CZ1	1315 aa		11.02	□□□□□ -0.65
NCBP3-205	ENST00000575815	SAMD9L	Q8IVG5	1584 aa		11.02	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms