RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FBXO31Q5XUX0 539 aaPredicted RBP27.56■■■□□ 2
VPS53-218ENST00000575207 FMN1Q68DA7 1419 aa27.55■■■□□ 2
VPS53-218ENST00000575207 ATP7AQ04656 1500 aa27.53■■■□□ 2
VPS53-218ENST00000575207 FAM135AQ9P2D6 1515 aa27.51■■□□□ 1.99
VPS53-218ENST00000575207 UGGT1Q9NYU2 1555 aa27.5■■□□□ 1.99
VPS53-218ENST00000575207 NLRP1Q9C000 1473 aa27.49■■□□□ 1.99
VPS53-218ENST00000575207 PZPP20742 1482 aa27.48■■□□□ 1.99
VPS53-218ENST00000575207 INO80Q9ULG1 1556 aaPredicted RBP27.47■■□□□ 1.99
VPS53-218ENST00000575207 MIA2Q96PC5 1412 aa27.46■■□□□ 1.99
VPS53-218ENST00000575207 SYCP2Q9BX26 1530 aa27.46■■□□□ 1.99
VPS53-218ENST00000575207 HNRNPMP52272 730 aaKnown RBP eCLIP27.44■■□□□ 1.984e-6■■□□□ 11.9
VPS53-218ENST00000575207 CDC42BPAQ5VT25 1732 aa27.42■■□□□ 1.98
VPS53-218ENST00000575207 XIRP1Q702N8 1843 aaKnown RBP27.42■■□□□ 1.98
VPS53-218ENST00000575207 TRIM52Q96A61 297 aa27.41■■□□□ 1.98
VPS53-218ENST00000575207 ZNF777Q9ULD5 760 aaPredicted RBP27.41■■□□□ 1.98
VPS53-218ENST00000575207 KIAA1107Q9UPP5 1409 aa27.39■■□□□ 1.97
VPS53-218ENST00000575207 ZC3H13Q5T200 1668 aaKnown RBP27.38■■□□□ 1.97
VPS53-218ENST00000575207 ZNF772Q68DY9 489 aaPredicted RBP27.37■■□□□ 1.97
VPS53-218ENST00000575207 KDM5DQ9BY66 1539 aa27.36■■□□□ 1.97
VPS53-218ENST00000575207 ROBO1Q9Y6N7 1651 aa27.36■■□□□ 1.97
VPS53-218ENST00000575207 LRRIQ1Q96JM4 1722 aa27.36■■□□□ 1.97
VPS53-218ENST00000575207 JCADQ9P266 1359 aa27.35■■□□□ 1.97
VPS53-218ENST00000575207 ADGBQ8N7X0 1667 aa27.35■■□□□ 1.97
VPS53-218ENST00000575207 PLEKHH2Q8IVE3 1493 aa27.3■■□□□ 1.96
VPS53-218ENST00000575207 CDK12Q9NYV4 1490 aaPredicted RBP27.29■■□□□ 1.96
VPS53-218ENST00000575207 GPATCH8Q9UKJ3 1502 aaKnown RBP27.28■■□□□ 1.96
VPS53-218ENST00000575207 ARHGAP35Q9NRY4 1499 aa27.28■■□□□ 1.96
VPS53-218ENST00000575207 DHX29Q7Z478 1369 aaKnown RBP27.28■■□□□ 1.96
VPS53-218ENST00000575207 RXRBP28702 533 aa27.27■■□□□ 1.96
VPS53-218ENST00000575207 EEA1Q15075 1411 aa27.26■■□□□ 1.95
VPS53-218ENST00000575207 WASHC2CQ9Y4E1 1318 aa27.26■■□□□ 1.95
VPS53-218ENST00000575207 LRRC9Q6ZRR7 1453 aa27.25■■□□□ 1.95
VPS53-218ENST00000575207 TMEM94Q12767 1356 aa27.24■■□□□ 1.95
VPS53-218ENST00000575207 LRP6O75581 1613 aa27.23■■□□□ 1.95
VPS53-218ENST00000575207 SCAF11Q99590 1463 aaKnown RBP27.23■■□□□ 1.95
VPS53-218ENST00000575207 SPATA31A6Q5VVP1 1343 aa27.22■■□□□ 1.95
VPS53-218ENST00000575207 KIF3BO15066 747 aa27.22■■□□□ 1.95
VPS53-218ENST00000575207 CCDC18Q5T9S5 1454 aa27.19■■□□□ 1.94
VPS53-218ENST00000575207 PHLPP1O60346 1717 aa27.19■■□□□ 1.94
VPS53-218ENST00000575207 RTEL1-TNFRSF6BF6WH68 1400 aa27.18■■□□□ 1.94
VPS53-218ENST00000575207 MAP3K1Q13233 1512 aa27.17■■□□□ 1.94
VPS53-218ENST00000575207 LTKP29376 864 aa27.17■■□□□ 1.94
VPS53-218ENST00000575207 MEX3CQ5U5Q3 659 aaKnown RBP27.17■■□□□ 1.94
VPS53-218ENST00000575207 CFDP1Q9UEE9 299 aaPredicted RBP27.17■■□□□ 1.94
VPS53-218ENST00000575207 FGD6Q6ZV73 1430 aa27.15■■□□□ 1.94
VPS53-218ENST00000575207 ARHGAP23Q9P227 1491 aa27.13■■□□□ 1.93
VPS53-218ENST00000575207 TXNDC2Q86VQ3 553 aa27.13■■□□□ 1.93
VPS53-218ENST00000575207 SLAIN2Q9P270 581 aa27.12■■□□□ 1.93
VPS53-218ENST00000575207 COL16A1Q07092 1604 aaPredicted RBP27.12■■□□□ 1.93
VPS53-218ENST00000575207 ZRANB1Q9UGI0 708 aa27.11■■□□□ 1.93
VPS53-218ENST00000575207 SLIT1O75093 1534 aa27.11■■□□□ 1.93
VPS53-218ENST00000575207 FOXD1Q16676 465 aa27.1■■□□□ 1.93
VPS53-218ENST00000575207 KCNA6P17658 529 aa27.09■■□□□ 1.93
VPS53-218ENST00000575207 NCOA2Q15596 1464 aa27.08■■□□□ 1.93
VPS53-218ENST00000575207 UBR1Q8IWV7 1749 aa27.08■■□□□ 1.93
VPS53-218ENST00000575207 CASKIN1Q8WXD9 1431 aa27.07■■□□□ 1.92
VPS53-218ENST00000575207 MBD5Q9P267 1494 aa27.07■■□□□ 1.92
VPS53-218ENST00000575207 PROSER2Q86WR7 435 aaPredicted RBP27.07■■□□□ 1.92
VPS53-218ENST00000575207 ERVK-7P63135 1459 aa27.05■■□□□ 1.92
VPS53-218ENST00000575207 SETBP1Q9Y6X0 1596 aa27.05■■□□□ 1.92
VPS53-218ENST00000575207 RBM33Q96EV2 1170 aaKnown RBP27.04■■□□□ 1.92
VPS53-218ENST00000575207 PRDM15P57071 1507 aaPredicted RBP27.03■■□□□ 1.92
VPS53-218ENST00000575207 RGS12O14924 1447 aa27.02■■□□□ 1.92
VPS53-218ENST00000575207 MSH6P52701 1360 aa27.02■■□□□ 1.92
VPS53-218ENST00000575207 EID1Q9Y6B2 187 aa27.02■■□□□ 1.92
VPS53-218ENST00000575207 CCNB3Q8WWL7 1395 aa27.01■■□□□ 1.91
VPS53-218ENST00000575207 ZNF644Q9H582 1327 aaPredicted RBP26.99■■□□□ 1.91
VPS53-218ENST00000575207 TIAM1Q13009 1591 aa26.99■■□□□ 1.91
VPS53-218ENST00000575207 UBTFP17480 764 aaKnown RBP26.98■■□□□ 1.91
VPS53-218ENST00000575207 SHPRHQ149N8 1683 aa26.98■■□□□ 1.91
VPS53-218ENST00000575207 NKTRP30414 1462 aaKnown RBP26.96■■□□□ 1.91
VPS53-218ENST00000575207 ABCC3O15438 1527 aa26.95■■□□□ 1.91
VPS53-218ENST00000575207 AFF2P51816 1311 aa26.95■■□□□ 1.91
VPS53-218ENST00000575207 NUTM2BA6NNL0 878 aaPredicted RBP26.95■■□□□ 1.9
VPS53-218ENST00000575207 NUTM2EB1AL46 878 aaPredicted RBP26.95■■□□□ 1.9
VPS53-218ENST00000575207 RBM6P78332 1123 aaKnown RBP26.95■■□□□ 1.9
VPS53-218ENST00000575207 NUTM2DQ5VT03 806 aaPredicted RBP26.95■■□□□ 1.9
VPS53-218ENST00000575207 NUTM2AQ8IVF1 878 aaPredicted RBP26.95■■□□□ 1.9
VPS53-218ENST00000575207 ATAD2Q6PL18 1390 aa26.91■■□□□ 1.9
VPS53-218ENST00000575207 TMEM2Q9UHN6 1383 aa26.9■■□□□ 1.9
VPS53-218ENST00000575207 CHIC1Q5VXU3 224 aa26.9■■□□□ 1.9
VPS53-218ENST00000575207 AHDC1Q5TGY3 1603 aaPredicted RBP26.9■■□□□ 1.9
VPS53-218ENST00000575207 NWD1Q149M9 1564 aa26.89■■□□□ 1.9
VPS53-218ENST00000575207 TET3O43151 1660 aa26.88■■□□□ 1.89
VPS53-218ENST00000575207 CAMSAP2Q08AD1 1489 aa26.87■■□□□ 1.89
VPS53-218ENST00000575207 QTRT2Q9H974 415 aaKnown RBP26.87■■□□□ 1.89
VPS53-218ENST00000575207 EP400Q96L91 3159 aa26.87■■□□□ 1.89
VPS53-218ENST00000575207 SLC26A8Q96RN1 970 aa26.86■■□□□ 1.89
VPS53-218ENST00000575207 FYCO1Q9BQS8 1478 aa26.85■■□□□ 1.89
VPS53-218ENST00000575207 CCDC141Q6ZP82 1450 aa26.83■■□□□ 1.89
VPS53-218ENST00000575207 KDM5AP29375 1690 aaKnown RBP26.82■■□□□ 1.88
VPS53-218ENST00000575207 DIP2AQ14689 1571 aa26.81■■□□□ 1.88
VPS53-218ENST00000575207 RSPH4AQ5TD94 716 aa26.8■■□□□ 1.88
VPS53-218ENST00000575207 CFAP65Q6ZU64 1925 aaKnown RBP26.8■■□□□ 1.88
VPS53-218ENST00000575207 NGLY1Q96IV0 654 aa26.79■■□□□ 1.88
VPS53-218ENST00000575207 EHMT2Q96KQ7 1210 aa26.79■■□□□ 1.88
VPS53-218ENST00000575207 CCDC125Q86Z20 511 aa26.77■■□□□ 1.88
VPS53-218ENST00000575207 NCOA3Q9Y6Q9 1424 aa26.76■■□□□ 1.87
VPS53-218ENST00000575207 C8orf37Q96NL8 207 aa26.73■■□□□ 1.87
VPS53-218ENST00000575207 ARHGAP31Q2M1Z3 1444 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms