RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 A2ML1A8K2U0 1454 aa33.56■■■□□ 2.96
VPS53-216ENST00000574029 KDM5DQ9BY66 1539 aa33.55■■■□□ 2.96
VPS53-216ENST00000574029 DNMT1P26358 1616 aaKnown RBP33.53■■■□□ 2.96
VPS53-216ENST00000574029 LOC105371045A0A1W2PR82 267 aa33.53■■■□□ 2.96
VPS53-216ENST00000574029 PZPP20742 1482 aa33.5■■■□□ 2.95
VPS53-216ENST00000574029 TSPY4P0CV99 314 aa33.49■■■□□ 2.95
VPS53-216ENST00000574029 TSPY10P0CW01 314 aa33.49■■■□□ 2.95
VPS53-216ENST00000574029 ZNF335Q9H4Z2 1342 aaPredicted RBP33.49■■■□□ 2.95
VPS53-216ENST00000574029 MAP3K1Q13233 1512 aa33.48■■■□□ 2.95
VPS53-216ENST00000574029 FBXO31Q5XUX0 539 aaPredicted RBP33.47■■■□□ 2.95
VPS53-216ENST00000574029 MAST1Q9Y2H9 1570 aa33.47■■■□□ 2.95
VPS53-216ENST00000574029 TNRQ92752 1358 aa33.47■■■□□ 2.95
VPS53-216ENST00000574029 WASHC2CQ9Y4E1 1318 aa33.46■■■□□ 2.95
VPS53-216ENST00000574029 KANK4Q5T7N3 995 aaPredicted RBP33.42■■■□□ 2.94
VPS53-216ENST00000574029 POLR1AO95602 1720 aaPredicted RBP33.41■■■□□ 2.94
VPS53-216ENST00000574029 RNF17Q9BXT8 1623 aaKnown RBP33.4■■■□□ 2.94
VPS53-216ENST00000574029 MIA2Q96PC5 1412 aa33.38■■■□□ 2.93
VPS53-216ENST00000574029 MYOM3Q5VTT5 1437 aa33.37■■■□□ 2.93
VPS53-216ENST00000574029 NEURL4Q96JN8 1562 aa33.36■■■□□ 2.93
VPS53-216ENST00000574029 EIF2AK4Q9P2K8 1649 aaKnown RBP33.35■■■□□ 2.93
VPS53-216ENST00000574029 ZC3H13Q5T200 1668 aaKnown RBP33.34■■■□□ 2.93
VPS53-216ENST00000574029 NLRP1Q9C000 1473 aa33.34■■■□□ 2.93
VPS53-216ENST00000574029 DISP3Q9P2K9 1392 aa33.34■■■□□ 2.93
VPS53-216ENST00000574029 ABCC3O15438 1527 aa33.32■■■□□ 2.92
VPS53-216ENST00000574029 MROH1Q8NDA8 1641 aa33.28■■■□□ 2.92
VPS53-216ENST00000574029 UBAP1LF5GYI3 381 aa33.28■■■□□ 2.92
VPS53-216ENST00000574029 THEMISQ8N1K5 641 aaPredicted RBP33.28■■■□□ 2.92
VPS53-216ENST00000574029 UGGT1Q9NYU2 1555 aa33.28■■■□□ 2.92
VPS53-216ENST00000574029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.27■■■□□ 2.92
VPS53-216ENST00000574029 SPATA31D1Q6ZQQ2 1576 aa33.26■■■□□ 2.91
VPS53-216ENST00000574029 ANKLE2Q86XL3 938 aa33.25■■■□□ 2.91
VPS53-216ENST00000574029 DUOX2Q9NRD8 1548 aa33.24■■■□□ 2.91
VPS53-216ENST00000574029 DEPDC5O75140 1603 aa33.24■■■□□ 2.91
VPS53-216ENST00000574029 CPS1P31327 1500 aa33.23■■■□□ 2.91
VPS53-216ENST00000574029 MED14O60244 1454 aa33.21■■■□□ 2.91
VPS53-216ENST00000574029 SHANK2Q9UPX8 1470 aa33.21■■■□□ 2.91
VPS53-216ENST00000574029 CEP152O94986 1710 aa33.2■■■□□ 2.91
VPS53-216ENST00000574029 ILDR2Q71H61 639 aa33.2■■■□□ 2.91
VPS53-216ENST00000574029 CROCC2H7BZ55 1655 aa33.2■■■□□ 2.9
VPS53-216ENST00000574029 ERVK-7P63135 1459 aa33.19■■■□□ 2.9
VPS53-216ENST00000574029 VWDEQ8N2E2 1590 aa33.17■■■□□ 2.9
VPS53-216ENST00000574029 NPHP4O75161 1426 aaPredicted RBP33.17■■■□□ 2.9
VPS53-216ENST00000574029 PTPN23Q9H3S7 1636 aa33.17■■■□□ 2.9
VPS53-216ENST00000574029 ABCC5O15440 1437 aa33.16■■■□□ 2.9
VPS53-216ENST00000574029 IQGAP1P46940 1657 aa33.13■■■□□ 2.89
VPS53-216ENST00000574029 KIF15Q9NS87 1388 aa33.12■■■□□ 2.89
VPS53-216ENST00000574029 PRDM15P57071 1507 aaPredicted RBP33.12■■■□□ 2.89
VPS53-216ENST00000574029 ERBINQ96RT1 1412 aa33.11■■■□□ 2.89
VPS53-216ENST00000574029 APLP2Q06481 763 aa33.11■■■□□ 2.89
VPS53-216ENST00000574029 CFAP65Q6ZU64 1925 aaKnown RBP33.1■■■□□ 2.89
VPS53-216ENST00000574029 UBR1Q8IWV7 1749 aa33.09■■■□□ 2.89
VPS53-216ENST00000574029 DAPK1P53355 1430 aa33.08■■■□□ 2.89
VPS53-216ENST00000574029 ARHGAP31Q2M1Z3 1444 aa33.07■■■□□ 2.88
VPS53-216ENST00000574029 RRP7BPQ9NSQ0 103 aa33.06■■■□□ 2.88
VPS53-216ENST00000574029 FGD6Q6ZV73 1430 aa33.05■■■□□ 2.88
VPS53-216ENST00000574029 TOM1O60784 492 aa33.04■■■□□ 2.88
VPS53-216ENST00000574029 SOCS7O14512 581 aa33.02■■■□□ 2.88
VPS53-216ENST00000574029 STRCP1A6NGW2 1772 aa33.01■■■□□ 2.87
VPS53-216ENST00000574029 PIP4K2BP78356 416 aa32.98■■■□□ 2.87
VPS53-216ENST00000574029 ARHGAP23Q9P227 1491 aa32.97■■■□□ 2.87
VPS53-216ENST00000574029 SCAF1Q9H7N4 1312 aaKnown RBP32.97■■■□□ 2.87
VPS53-216ENST00000574029 SLIT1O75093 1534 aa32.97■■■□□ 2.87
VPS53-216ENST00000574029 SCAF11Q99590 1463 aaKnown RBP32.96■■■□□ 2.87
VPS53-216ENST00000574029 ALKQ9UM73 1620 aa32.95■■■□□ 2.87
VPS53-216ENST00000574029 HSPA1LP34931 641 aa32.95■■■□□ 2.87
VPS53-216ENST00000574029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.94■■■□□ 2.86
VPS53-216ENST00000574029 ANKRD30AQ9BXX3 1397 aa32.94■■■□□ 2.86
VPS53-216ENST00000574029 LRRC7Q96NW7 1537 aa32.93■■■□□ 2.86
VPS53-216ENST00000574029 SYNMO15061 1565 aa32.93■■■□□ 2.86
VPS53-216ENST00000574029 KANK1Q14678 1352 aa32.93■■■□□ 2.86
VPS53-216ENST00000574029 LMTK2Q8IWU2 1503 aa32.92■■■□□ 2.86
VPS53-216ENST00000574029 PIK3C2BO00750 1634 aa32.91■■■□□ 2.86
VPS53-216ENST00000574029 LTKP29376 864 aa32.9■■■□□ 2.86
VPS53-216ENST00000574029 CHIC2Q9UKJ5 165 aa32.9■■■□□ 2.86
VPS53-216ENST00000574029 TXNDC2Q86VQ3 553 aa32.88■■■□□ 2.85
VPS53-216ENST00000574029 KDM5AP29375 1690 aaKnown RBP32.86■■■□□ 2.85
VPS53-216ENST00000574029 ADGRL2O95490 1459 aa32.85■■■□□ 2.85
VPS53-216ENST00000574029 TMEM2Q9UHN6 1383 aa32.83■■■□□ 2.85
VPS53-216ENST00000574029 EID1Q9Y6B2 187 aa32.82■■■□□ 2.84
VPS53-216ENST00000574029 MED1Q15648 1581 aaPredicted RBP32.81■■■□□ 2.84
VPS53-216ENST00000574029 EFCAB6Q5THR3 1501 aa32.8■■■□□ 2.84
VPS53-216ENST00000574029 IDI1Q13907 227 aa32.78■■■□□ 2.84
VPS53-216ENST00000574029 NOS1P29475 1434 aa32.77■■■□□ 2.84
VPS53-216ENST00000574029 STAG3Q9UJ98 1225 aa32.77■■■□□ 2.84
VPS53-216ENST00000574029 XIRP1Q702N8 1843 aaKnown RBP32.75■■■□□ 2.83
VPS53-216ENST00000574029 FAM50AQ14320 339 aaKnown RBP32.73■■■□□ 2.83
VPS53-216ENST00000574029 ANKRD50Q9ULJ7 1429 aa32.7■■■□□ 2.83
VPS53-216ENST00000574029 ADGRB3O60242 1522 aa32.7■■■□□ 2.83
VPS53-216ENST00000574029 TET3O43151 1660 aa32.69■■■□□ 2.82
VPS53-216ENST00000574029 RPRD2Q5VT52 1461 aaKnown RBP32.67■■■□□ 2.82
VPS53-216ENST00000574029 SLC52A1Q9NWF4 448 aa32.67■■■□□ 2.82
VPS53-216ENST00000574029 UNC13BO14795 1591 aa32.59■■■□□ 2.81
VPS53-216ENST00000574029 KCNA6P17658 529 aa32.59■■■□□ 2.81
VPS53-216ENST00000574029 GCC2Q8IWJ2 1684 aa32.59■■■□□ 2.81
VPS53-216ENST00000574029 SLC26A8Q96RN1 970 aa32.58■■■□□ 2.81
VPS53-216ENST00000574029 SENP3Q9H4L4 574 aaPredicted RBP32.58■■■□□ 2.81
VPS53-216ENST00000574029 TMEM94Q12767 1356 aa32.56■■■□□ 2.8
VPS53-216ENST00000574029 MYO5BQ9ULV0 1848 aa32.56■■■□□ 2.8
VPS53-216ENST00000574029 NWD1Q149M9 1564 aa32.55■■■□□ 2.8
VPS53-216ENST00000574029 ZFYVE9O95405 1425 aa32.53■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms