RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 RNF17Q9BXT8 1623 aaKnown RBP27.31■■□□□ 1.96
SMG6-214ENST00000573827 NCOA1Q15788 1441 aa27.31■■□□□ 1.96
SMG6-214ENST00000573827 MYO3AQ8NEV4 1616 aa27.3■■□□□ 1.96
SMG6-214ENST00000573827 CROCC2H7BZ55 1655 aa27.29■■□□□ 1.96
SMG6-214ENST00000573827 ZNF142P52746 1687 aaPredicted RBP27.28■■□□□ 1.96
SMG6-214ENST00000573827 MROH1Q8NDA8 1641 aa27.27■■□□□ 1.96
SMG6-214ENST00000573827 PZPP20742 1482 aa27.27■■□□□ 1.96
SMG6-214ENST00000573827 DNMT1P26358 1616 aaKnown RBP27.27■■□□□ 1.96
SMG6-214ENST00000573827 EIF2AK4Q9P2K8 1649 aaKnown RBP27.27■■□□□ 1.96
SMG6-214ENST00000573827 DAPK1P53355 1430 aa27.26■■□□□ 1.95
SMG6-214ENST00000573827 DUOX2Q9NRD8 1548 aa27.25■■□□□ 1.95
SMG6-214ENST00000573827 PTPRTO14522 1441 aa27.24■■□□□ 1.95
SMG6-214ENST00000573827 CEP170BQ9Y4F5 1589 aaPredicted RBP27.24■■□□□ 1.95
SMG6-214ENST00000573827 FBXO31Q5XUX0 539 aaPredicted RBP27.24■■□□□ 1.95
SMG6-214ENST00000573827 CAMSAP1Q5T5Y3 1602 aa27.23■■□□□ 1.95
SMG6-214ENST00000573827 WASHC2CQ9Y4E1 1318 aa27.23■■□□□ 1.95
SMG6-214ENST00000573827 FBXO41Q8TF61 875 aa27.23■■□□□ 1.95
SMG6-214ENST00000573827 ABCC3O15438 1527 aa27.22■■□□□ 1.95
SMG6-214ENST00000573827 DMRT2Q9Y5R5 561 aa27.22■■□□□ 1.95
SMG6-214ENST00000573827 KIF15Q9NS87 1388 aa27.22■■□□□ 1.95
SMG6-214ENST00000573827 A2ML1A8K2U0 1454 aa27.19■■□□□ 1.94
SMG6-214ENST00000573827 PLA2R1Q13018 1463 aa27.19■■□□□ 1.94
SMG6-214ENST00000573827 TNRQ92752 1358 aa27.18■■□□□ 1.94
SMG6-214ENST00000573827 ERBINQ96RT1 1412 aa27.16■■□□□ 1.94
SMG6-214ENST00000573827 ZC3H13Q5T200 1668 aaKnown RBP27.15■■□□□ 1.94
SMG6-214ENST00000573827 CERKQ8TCT0 537 aa27.15■■□□□ 1.94
SMG6-214ENST00000573827 RRP7BPQ9NSQ0 103 aa27.14■■□□□ 1.94
SMG6-214ENST00000573827 PRDM15P57071 1507 aaPredicted RBP27.13■■□□□ 1.93
SMG6-214ENST00000573827 NCKAP5LQ9HCH0 1330 aa27.12■■□□□ 1.93
SMG6-214ENST00000573827 ADGRL2O95490 1459 aa27.12■■□□□ 1.93
SMG6-214ENST00000573827 DEPDC5O75140 1603 aa27.11■■□□□ 1.93
SMG6-214ENST00000573827 SPATA31D1Q6ZQQ2 1576 aa27.1■■□□□ 1.93
SMG6-214ENST00000573827 LTBP4Q8N2S1 1624 aa27.09■■□□□ 1.93
SMG6-214ENST00000573827 ANKRD30AQ9BXX3 1397 aa27.09■■□□□ 1.93
SMG6-214ENST00000573827 CEP152O94986 1710 aa27.08■■□□□ 1.93
SMG6-214ENST00000573827 CHIC2Q9UKJ5 165 aa27.08■■□□□ 1.93
SMG6-214ENST00000573827 ERVK-7P63135 1459 aa27.07■■□□□ 1.92
SMG6-214ENST00000573827 NLRP1Q9C000 1473 aa27.07■■□□□ 1.92
SMG6-214ENST00000573827 PKD2Q13563 968 aa27.07■■□□□ 1.92
SMG6-214ENST00000573827 ARHGAP31Q2M1Z3 1444 aa27.05■■□□□ 1.92
SMG6-214ENST00000573827 VWDEQ8N2E2 1590 aa27.05■■□□□ 1.92
SMG6-214ENST00000573827 FAM50AQ14320 339 aaKnown RBP27.02■■□□□ 1.92
SMG6-214ENST00000573827 NEURL4Q96JN8 1562 aa27.01■■□□□ 1.92
SMG6-214ENST00000573827 LMTK2Q8IWU2 1503 aa27■■□□□ 1.91
SMG6-214ENST00000573827 UGGT1Q9NYU2 1555 aa26.98■■□□□ 1.91
SMG6-214ENST00000573827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.97■■□□□ 1.91
SMG6-214ENST00000573827 ZNF335Q9H4Z2 1342 aaPredicted RBP26.94■■□□□ 1.9
SMG6-214ENST00000573827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.94■■□□□ 1.9
SMG6-214ENST00000573827 CFAP65Q6ZU64 1925 aaKnown RBP26.94■■□□□ 1.9
SMG6-214ENST00000573827 POLR1AO95602 1720 aaPredicted RBP26.93■■□□□ 1.9
SMG6-214ENST00000573827 ANKRD50Q9ULJ7 1429 aa26.93■■□□□ 1.9
SMG6-214ENST00000573827 THEMISQ8N1K5 641 aaPredicted RBP26.93■■□□□ 1.9
SMG6-214ENST00000573827 MED14O60244 1454 aa26.91■■□□□ 1.9
SMG6-214ENST00000573827 IQSEC2Q5JU85 1478 aa26.9■■□□□ 1.9
SMG6-214ENST00000573827 KANK1Q14678 1352 aa26.9■■□□□ 1.9
SMG6-214ENST00000573827 PPARGC1BQ86YN6 1023 aaKnown RBP26.9■■□□□ 1.9
SMG6-214ENST00000573827 ROCK1Q13464 1354 aa26.89■■□□□ 1.9
SMG6-214ENST00000573827 UBR1Q8IWV7 1749 aa26.88■■□□□ 1.89
SMG6-214ENST00000573827 EFCAB6Q5THR3 1501 aa26.88■■□□□ 1.89
SMG6-214ENST00000573827 ANKLE2Q86XL3 938 aa26.87■■□□□ 1.89
SMG6-214ENST00000573827 NOS1P29475 1434 aa26.85■■□□□ 1.89
SMG6-214ENST00000573827 ARHGAP23Q9P227 1491 aa26.84■■□□□ 1.89
SMG6-214ENST00000573827 NPHP4O75161 1426 aaPredicted RBP26.83■■□□□ 1.89
SMG6-214ENST00000573827 SYNMO15061 1565 aa26.83■■□□□ 1.89
SMG6-214ENST00000573827 SLIT1O75093 1534 aa26.81■■□□□ 1.88
SMG6-214ENST00000573827 UNC13BO14795 1591 aa26.81■■□□□ 1.88
SMG6-214ENST00000573827 PIK3C2BO00750 1634 aa26.79■■□□□ 1.88
SMG6-214ENST00000573827 RRBP1Q9P2E9 1410 aaKnown RBP26.79■■□□□ 1.88
SMG6-214ENST00000573827 IQGAP1P46940 1657 aa26.77■■□□□ 1.88
SMG6-214ENST00000573827 IDI1Q13907 227 aa26.77■■□□□ 1.88
SMG6-214ENST00000573827 RPRD2Q5VT52 1461 aaKnown RBP26.76■■□□□ 1.87
SMG6-214ENST00000573827 LTKP29376 864 aa26.76■■□□□ 1.87
SMG6-214ENST00000573827 TET3O43151 1660 aa26.76■■□□□ 1.87
SMG6-214ENST00000573827 SCAF11Q99590 1463 aaKnown RBP26.75■■□□□ 1.87
SMG6-214ENST00000573827 KDM5AP29375 1690 aaKnown RBP26.75■■□□□ 1.87
SMG6-214ENST00000573827 TMEM2Q9UHN6 1383 aa26.72■■□□□ 1.87
SMG6-214ENST00000573827 CPS1P31327 1500 aa26.72■■□□□ 1.87
SMG6-214ENST00000573827 ITGAEP38570 1179 aa26.7■■□□□ 1.86
SMG6-214ENST00000573827 IQGAP3Q86VI3 1631 aa26.69■■□□□ 1.86
SMG6-214ENST00000573827 GCC2Q8IWJ2 1684 aa26.69■■□□□ 1.86
SMG6-214ENST00000573827 ADGRB3O60242 1522 aa26.68■■□□□ 1.86
SMG6-214ENST00000573827 STRCP1A6NGW2 1772 aa26.68■■□□□ 1.86
SMG6-214ENST00000573827 TXNDC2Q86VQ3 553 aa26.67■■□□□ 1.86
SMG6-214ENST00000573827 SLC52A1Q9NWF4 448 aa26.67■■□□□ 1.86
SMG6-214ENST00000573827 E9PCH4 1651 aa26.65■■□□□ 1.86
SMG6-214ENST00000573827 NUP155O75694 1391 aa26.62■■□□□ 1.85
SMG6-214ENST00000573827 UBAP1LF5GYI3 381 aa26.6■■□□□ 1.85
SMG6-214ENST00000573827 LRRC7Q96NW7 1537 aa26.6■■□□□ 1.85
SMG6-214ENST00000573827 NAIPQ13075 1403 aa26.59■■□□□ 1.85
SMG6-214ENST00000573827 ALKQ9UM73 1620 aa26.59■■□□□ 1.85
SMG6-214ENST00000573827 EID1Q9Y6B2 187 aa26.59■■□□□ 1.85
SMG6-214ENST00000573827 ZFYVE9O95405 1425 aa26.58■■□□□ 1.85
SMG6-214ENST00000573827 STAG3Q9UJ98 1225 aa26.58■■□□□ 1.85
SMG6-214ENST00000573827 TMEM131LA2VDJ0 1609 aa26.57■■□□□ 1.84
SMG6-214ENST00000573827 MYO5BQ9ULV0 1848 aa26.55■■□□□ 1.84
SMG6-214ENST00000573827 HFM1A2PYH4 1435 aa26.5■■□□□ 1.83
SMG6-214ENST00000573827 RIMS2Q9UQ26 1411 aa26.48■■□□□ 1.83
SMG6-214ENST00000573827 SLC26A8Q96RN1 970 aa26.46■■□□□ 1.83
SMG6-214ENST00000573827 XIRP1Q702N8 1843 aaKnown RBP26.46■■□□□ 1.83
SMG6-214ENST00000573827 PLEKHG1Q9ULL1 1385 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms