RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 CASKIN1Q8WXD9 1431 aa11.95□□□□□ -0.5
NUP88-205ENST00000572809 IER5LQ5T953 404 aa11.95□□□□□ -0.5
NUP88-205ENST00000572809 SGIP1Q9BQI5 828 aa11.95□□□□□ -0.5
NUP88-205ENST00000572809 AKNAQ7Z591 1439 aa11.94□□□□□ -0.5
NUP88-205ENST00000572809 FANCAO15360 1455 aa11.94□□□□□ -0.5
NUP88-205ENST00000572809 PLCH2O75038 1416 aa11.94□□□□□ -0.5
NUP88-205ENST00000572809 EFCAB2Q5VUJ9 269 aa11.93□□□□□ -0.5
NUP88-205ENST00000572809 ADGRL1O94910 1474 aa11.93□□□□□ -0.5
NUP88-205ENST00000572809 TROQ12816 1431 aaPredicted RBP11.93□□□□□ -0.5
NUP88-205ENST00000572809 LOC105371045A0A1W2PR82 267 aa11.92□□□□□ -0.5
NUP88-205ENST00000572809 SLC24A1O60721 1099 aa11.92□□□□□ -0.5
NUP88-205ENST00000572809 TTC37Q6PGP7 1564 aa11.92□□□□□ -0.5
NUP88-205ENST00000572809 DENND4BO75064 1496 aaPredicted RBP11.91□□□□□ -0.5
NUP88-205ENST00000572809 SLAIN1Q8ND83 568 aa11.91□□□□□ -0.5
NUP88-205ENST00000572809 CCDC18Q5T9S5 1454 aa11.9□□□□□ -0.5
NUP88-205ENST00000572809 IFNL1Q8IU54 200 aa11.9□□□□□ -0.5
NUP88-205ENST00000572809 LRRIQ1Q96JM4 1722 aa11.9□□□□□ -0.5
NUP88-205ENST00000572809 PCF11O94913 1555 aaKnown RBP11.89□□□□□ -0.51
NUP88-205ENST00000572809 CFAP74Q9C0B2 1584 aa11.89□□□□□ -0.51
NUP88-205ENST00000572809 NUBP1P53384 320 aa11.89□□□□□ -0.51
NUP88-205ENST00000572809 FYCO1Q9BQS8 1478 aa11.89□□□□□ -0.51
NUP88-205ENST00000572809 SCAPERQ9BY12 1400 aa11.88□□□□□ -0.51
NUP88-205ENST00000572809 ARID4BQ4LE39 1312 aaPredicted RBP11.87□□□□□ -0.51
NUP88-205ENST00000572809 KIF14Q15058 1648 aa11.87□□□□□ -0.51
NUP88-205ENST00000572809 ST18O60284 1047 aa11.87□□□□□ -0.51
NUP88-205ENST00000572809 TMEM106CQ9BVX2 250 aa11.87□□□□□ -0.51
NUP88-205ENST00000572809 CEP162Q5TB80 1403 aa11.86□□□□□ -0.51
NUP88-205ENST00000572809 FRMPD1Q5SYB0 1578 aa11.86□□□□□ -0.51
NUP88-205ENST00000572809 MYO5CQ9NQX4 1742 aa11.86□□□□□ -0.51
NUP88-205ENST00000572809 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
NUP88-205ENST00000572809 RICTORQ6R327 1708 aa11.85□□□□□ -0.51
NUP88-205ENST00000572809 PLCG2P16885 1265 aa11.84□□□□□ -0.51
NUP88-205ENST00000572809 AFAP1Q8N556 730 aa11.84□□□□□ -0.51
NUP88-205ENST00000572809 ARHGAP5Q13017 1502 aa11.84□□□□□ -0.51
NUP88-205ENST00000572809 MYT1LQ9UL68 1186 aa11.83□□□□□ -0.52
NUP88-205ENST00000572809 MAGI2Q86UL8 1455 aa11.83□□□□□ -0.52
NUP88-205ENST00000572809 FAM212AQ96EL1 285 aa11.82□□□□□ -0.52
NUP88-205ENST00000572809 ZNF777Q9ULD5 760 aaPredicted RBP11.82□□□□□ -0.52
NUP88-205ENST00000572809 POGZQ7Z3K3 1410 aa11.81□□□□□ -0.52
NUP88-205ENST00000572809 YEATS2Q9ULM3 1422 aa11.81□□□□□ -0.52
NUP88-205ENST00000572809 VASPP50552 380 aaPredicted RBP11.81□□□□□ -0.52
NUP88-205ENST00000572809 MTUS2Q5JR59 1369 aa11.8□□□□□ -0.52
NUP88-205ENST00000572809 CDC42BPBQ9Y5S2 1711 aa11.8□□□□□ -0.52
NUP88-205ENST00000572809 ZMYM4Q5VZL5 1548 aa11.8□□□□□ -0.52
NUP88-205ENST00000572809 IRX5P78411 483 aaPredicted RBP11.79□□□□□ -0.52
NUP88-205ENST00000572809 CFDP1Q9UEE9 299 aaPredicted RBP11.79□□□□□ -0.52
NUP88-205ENST00000572809 ZFYVE16Q7Z3T8 1539 aa11.79□□□□□ -0.52
NUP88-205ENST00000572809 ATP10AO60312 1499 aa11.78□□□□□ -0.52
NUP88-205ENST00000572809 ZNF518AQ6AHZ1 1483 aa11.78□□□□□ -0.52
NUP88-205ENST00000572809 GPATCH8Q9UKJ3 1502 aaKnown RBP11.78□□□□□ -0.52
NUP88-205ENST00000572809 MLECQ14165 292 aa11.78□□□□□ -0.52
NUP88-205ENST00000572809 PREX2Q70Z35 1606 aa11.78□□□□□ -0.52
NUP88-205ENST00000572809 CCNB3Q8WWL7 1395 aa11.78□□□□□ -0.52
NUP88-205ENST00000572809 ARHGEF40Q8TER5 1519 aa11.77□□□□□ -0.52
NUP88-205ENST00000572809 HNRNPMP52272 730 aaKnown RBP eCLIP11.77□□□□□ -0.53
NUP88-205ENST00000572809 ADAMTSL3P82987 1691 aa11.77□□□□□ -0.53
NUP88-205ENST00000572809 BCORL1Q5H9F3 1711 aa11.76□□□□□ -0.53
NUP88-205ENST00000572809 CDC42BPAQ5VT25 1732 aa11.76□□□□□ -0.53
NUP88-205ENST00000572809 TRAPPC8Q9Y2L5 1435 aa11.76□□□□□ -0.53
NUP88-205ENST00000572809 ARHGEF12Q9NZN5 1544 aa11.76□□□□□ -0.53
NUP88-205ENST00000572809 PTPRMP28827 1452 aa11.75□□□□□ -0.53
NUP88-205ENST00000572809 MLH3Q9UHC1 1453 aa11.74□□□□□ -0.53
NUP88-205ENST00000572809 ABCC1P33527 1531 aa11.73□□□□□ -0.53
NUP88-205ENST00000572809 KDM5CP41229 1560 aa11.73□□□□□ -0.53
NUP88-205ENST00000572809 C9orf84Q5VXU9 1444 aa11.73□□□□□ -0.53
NUP88-205ENST00000572809 VPS8Q8N3P4 1428 aa11.73□□□□□ -0.53
NUP88-205ENST00000572809 OCEL1Q9H607 264 aa11.73□□□□□ -0.53
NUP88-205ENST00000572809 MADDQ8WXG6 1647 aa11.71□□□□□ -0.53
NUP88-205ENST00000572809 EHBP1L1Q8N3D4 1523 aa11.71□□□□□ -0.53
NUP88-205ENST00000572809 KIAA1107Q9UPP5 1409 aa11.71□□□□□ -0.53
NUP88-205ENST00000572809 SPAG9O60271 1321 aaKnown RBP11.71□□□□□ -0.53
NUP88-205ENST00000572809 ZNF644Q9H582 1327 aaPredicted RBP11.71□□□□□ -0.53
NUP88-205ENST00000572809 DCAF8Q5TAQ9 597 aa11.71□□□□□ -0.53
NUP88-205ENST00000572809 SIGLEC1Q9BZZ2 1709 aa11.71□□□□□ -0.54
NUP88-205ENST00000572809 ITSN2Q9NZM3 1697 aa11.71□□□□□ -0.54
NUP88-205ENST00000572809 SAMD9LQ8IVG5 1584 aa11.71□□□□□ -0.54
NUP88-205ENST00000572809 HECW2Q9P2P5 1572 aa11.71□□□□□ -0.54
NUP88-205ENST00000572809 PLEKHH2Q8IVE3 1493 aa11.7□□□□□ -0.54
NUP88-205ENST00000572809 PYGBP11216 843 aa11.7□□□□□ -0.54
NUP88-205ENST00000572809 KANK4Q5T7N3 995 aaPredicted RBP11.69□□□□□ -0.54
NUP88-205ENST00000572809 RIMS1Q86UR5 1692 aaKnown RBP11.68□□□□□ -0.54
NUP88-205ENST00000572809 TIAM1Q13009 1591 aa11.68□□□□□ -0.54
NUP88-205ENST00000572809 IFNLR1Q8IU57 520 aaPredicted RBP11.68□□□□□ -0.54
NUP88-205ENST00000572809 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.68□□□□□ -0.54
NUP88-205ENST00000572809 SYCP2Q9BX26 1530 aa11.68□□□□□ -0.54
NUP88-205ENST00000572809 NCOA2Q15596 1464 aa11.68□□□□□ -0.54
NUP88-205ENST00000572809 DIP2CQ9Y2E4 1556 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 MMRN1Q13201 1228 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 RSPH4AQ5TD94 716 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 SPNS2Q8IVW8 549 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 TMEM121BQ9BXQ6 578 aaPredicted RBP11.67□□□□□ -0.54
NUP88-205ENST00000572809 ESF1Q9H501 851 aaKnown RBP11.67□□□□□ -0.54
NUP88-205ENST00000572809 PCDHB8Q9UN66 801 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 LRRC9Q6ZRR7 1453 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 KIDINS220Q9ULH0 1771 aa11.67□□□□□ -0.54
NUP88-205ENST00000572809 SUPT6HQ7KZ85 1726 aaKnown RBP11.66□□□□□ -0.54
NUP88-205ENST00000572809 SNPHO15079 494 aa11.66□□□□□ -0.54
NUP88-205ENST00000572809 CEBPAP49715 358 aaPredicted RBP11.66□□□□□ -0.54
NUP88-205ENST00000572809 MARVELD3Q96A59 401 aa11.66□□□□□ -0.54
NUP88-205ENST00000572809 REREQ9P2R6 1566 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms