RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 WASHC2CQ9Y4E1 1318 aa31.06■■■□□ 2.56
NUP88-204ENST00000572290 DUOX2Q9NRD8 1548 aa31.05■■■□□ 2.56
NUP88-204ENST00000572290 CHIC2Q9UKJ5 165 aa31.05■■■□□ 2.56
NUP88-204ENST00000572290 FAM135AQ9P2D6 1515 aa31.03■■■□□ 2.56
NUP88-204ENST00000572290 CROCC2H7BZ55 1655 aa31.03■■■□□ 2.56
NUP88-204ENST00000572290 PTPRKQ15262 1439 aa31.02■■■□□ 2.56
NUP88-204ENST00000572290 KDM5DQ9BY66 1539 aa31.02■■■□□ 2.56
NUP88-204ENST00000572290 ANKRD30AQ9BXX3 1397 aa31.02■■■□□ 2.56
NUP88-204ENST00000572290 EIF2AK4Q9P2K8 1649 aaKnown RBP30.98■■■□□ 2.55
NUP88-204ENST00000572290 ERBINQ96RT1 1412 aa30.98■■■□□ 2.55
NUP88-204ENST00000572290 NCOA1Q15788 1441 aa30.96■■■□□ 2.55
NUP88-204ENST00000572290 RNF17Q9BXT8 1623 aaKnown RBP30.95■■■□□ 2.55
NUP88-204ENST00000572290 SETD1BQ9UPS6 1966 aaKnown RBP30.95■■■□□ 2.54
NUP88-204ENST00000572290 ADGRL2O95490 1459 aa30.92■■■□□ 2.54
NUP88-204ENST00000572290 PZPP20742 1482 aa30.91■■■□□ 2.54
NUP88-204ENST00000572290 FBXO31Q5XUX0 539 aaPredicted RBP30.91■■■□□ 2.54
NUP88-204ENST00000572290 ABCC3O15438 1527 aa30.88■■■□□ 2.53
NUP88-204ENST00000572290 ILDR1Q86SU0 546 aaPredicted RBP30.88■■■□□ 2.53
NUP88-204ENST00000572290 MROH1Q8NDA8 1641 aa30.87■■■□□ 2.53
NUP88-204ENST00000572290 TNRQ92752 1358 aa30.86■■■□□ 2.53
NUP88-204ENST00000572290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.85■■■□□ 2.53
NUP88-204ENST00000572290 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.84■■■□□ 2.53
NUP88-204ENST00000572290 DMRT2Q9Y5R5 561 aa30.83■■■□□ 2.53
NUP88-204ENST00000572290 MYO3AQ8NEV4 1616 aa30.82■■■□□ 2.52
NUP88-204ENST00000572290 PRDM15P57071 1507 aaPredicted RBP30.82■■■□□ 2.52
NUP88-204ENST00000572290 ZC3H13Q5T200 1668 aaKnown RBP30.81■■■□□ 2.52
NUP88-204ENST00000572290 KANK1Q14678 1352 aa30.8■■■□□ 2.52
NUP88-204ENST00000572290 ITGAEP38570 1179 aa30.8■■■□□ 2.52
NUP88-204ENST00000572290 ANKRD50Q9ULJ7 1429 aa30.79■■■□□ 2.52
NUP88-204ENST00000572290 CEP170BQ9Y4F5 1589 aaPredicted RBP30.79■■■□□ 2.52
NUP88-204ENST00000572290 A2ML1A8K2U0 1454 aa30.78■■■□□ 2.52
NUP88-204ENST00000572290 ROCK1Q13464 1354 aa30.77■■■□□ 2.52
NUP88-204ENST00000572290 CAMSAP1Q5T5Y3 1602 aa30.76■■■□□ 2.51
NUP88-204ENST00000572290 ZNF142P52746 1687 aaPredicted RBP30.74■■■□□ 2.51
NUP88-204ENST00000572290 DEPDC5O75140 1603 aa30.74■■■□□ 2.51
NUP88-204ENST00000572290 RRBP1Q9P2E9 1410 aaKnown RBP30.73■■■□□ 2.51
NUP88-204ENST00000572290 STRCQ7RTU9 1775 aa30.73■■■□□ 2.51
NUP88-204ENST00000572290 ARHGAP31Q2M1Z3 1444 aa30.73■■■□□ 2.51
NUP88-204ENST00000572290 ERVK-7P63135 1459 aa30.72■■■□□ 2.51
NUP88-204ENST00000572290 PTPRTO14522 1441 aa30.72■■■□□ 2.51
NUP88-204ENST00000572290 NLRP1Q9C000 1473 aa30.71■■■□□ 2.51
NUP88-204ENST00000572290 SPATA31D1Q6ZQQ2 1576 aa30.71■■■□□ 2.51
NUP88-204ENST00000572290 PLA2R1Q13018 1463 aa30.7■■■□□ 2.51
NUP88-204ENST00000572290 CEP152O94986 1710 aa30.7■■■□□ 2.51
NUP88-204ENST00000572290 NCKAP5LQ9HCH0 1330 aa30.7■■■□□ 2.5
NUP88-204ENST00000572290 PKD2Q13563 968 aa30.69■■■□□ 2.5
NUP88-204ENST00000572290 LMTK2Q8IWU2 1503 aa30.68■■■□□ 2.5
NUP88-204ENST00000572290 VWDEQ8N2E2 1590 aa30.66■■■□□ 2.5
NUP88-204ENST00000572290 THEMISQ8N1K5 641 aaPredicted RBP30.64■■■□□ 2.5
NUP88-204ENST00000572290 UGGT1Q9NYU2 1555 aa30.61■■■□□ 2.49
NUP88-204ENST00000572290 ANKLE2Q86XL3 938 aa30.55■■■□□ 2.48
NUP88-204ENST00000572290 CERKQ8TCT0 537 aa30.55■■■□□ 2.48
NUP88-204ENST00000572290 EFCAB6Q5THR3 1501 aa30.55■■■□□ 2.48
NUP88-204ENST00000572290 FBXO41Q8TF61 875 aa30.52■■■□□ 2.48
NUP88-204ENST00000572290 UNC13BO14795 1591 aa30.52■■■□□ 2.48
NUP88-204ENST00000572290 NOS1P29475 1434 aa30.49■■■□□ 2.47
NUP88-204ENST00000572290 NUP155O75694 1391 aa30.49■■■□□ 2.47
NUP88-204ENST00000572290 RPRD2Q5VT52 1461 aaKnown RBP30.48■■■□□ 2.47
NUP88-204ENST00000572290 IDI1Q13907 227 aa30.46■■■□□ 2.47
NUP88-204ENST00000572290 STAG3Q9UJ98 1225 aa30.45■■■□□ 2.47
NUP88-204ENST00000572290 NAIPQ13075 1403 aa30.44■■■□□ 2.46
NUP88-204ENST00000572290 TET3O43151 1660 aa30.43■■■□□ 2.46
NUP88-204ENST00000572290 SLC52A1Q9NWF4 448 aa30.43■■■□□ 2.46
NUP88-204ENST00000572290 ZNF335Q9H4Z2 1342 aaPredicted RBP30.43■■■□□ 2.46
NUP88-204ENST00000572290 NEURL4Q96JN8 1562 aa30.42■■■□□ 2.46
NUP88-204ENST00000572290 SYNMO15061 1565 aa30.41■■■□□ 2.46
NUP88-204ENST00000572290 CFAP65Q6ZU64 1925 aaKnown RBP30.41■■■□□ 2.46
NUP88-204ENST00000572290 NPHP4O75161 1426 aaPredicted RBP30.4■■■□□ 2.46
NUP88-204ENST00000572290 LTBP4Q8N2S1 1624 aa30.4■■■□□ 2.46
NUP88-204ENST00000572290 UBR1Q8IWV7 1749 aa30.39■■■□□ 2.46
NUP88-204ENST00000572290 MED14O60244 1454 aa30.39■■■□□ 2.46
NUP88-204ENST00000572290 IQGAP3Q86VI3 1631 aa30.39■■■□□ 2.46
NUP88-204ENST00000572290 HFM1A2PYH4 1435 aa30.38■■■□□ 2.45
NUP88-204ENST00000572290 PIK3C2BO00750 1634 aa30.37■■■□□ 2.45
NUP88-204ENST00000572290 POLR1AO95602 1720 aaPredicted RBP30.37■■■□□ 2.45
NUP88-204ENST00000572290 ARHGAP23Q9P227 1491 aa30.37■■■□□ 2.45
NUP88-204ENST00000572290 TXNDC2Q86VQ3 553 aa30.36■■■□□ 2.45
NUP88-204ENST00000572290 EID1Q9Y6B2 187 aa30.35■■■□□ 2.45
NUP88-204ENST00000572290 TMEM2Q9UHN6 1383 aa30.35■■■□□ 2.45
NUP88-204ENST00000572290 SLIT1O75093 1534 aa30.35■■■□□ 2.45
NUP88-204ENST00000572290 GCC2Q8IWJ2 1684 aa30.34■■■□□ 2.45
NUP88-204ENST00000572290 LTKP29376 864 aa30.34■■■□□ 2.45
NUP88-204ENST00000572290 SCAF11Q99590 1463 aaKnown RBP30.33■■■□□ 2.45
NUP88-204ENST00000572290 ADGRB3O60242 1522 aa30.29■■■□□ 2.44
NUP88-204ENST00000572290 E9PCH4 1651 aa30.29■■■□□ 2.44
NUP88-204ENST00000572290 TRIM52Q96A61 297 aa30.27■■■□□ 2.44
NUP88-204ENST00000572290 KDM5AP29375 1690 aaKnown RBP30.27■■■□□ 2.44
NUP88-204ENST00000572290 IQSEC2Q5JU85 1478 aa30.25■■■□□ 2.43
NUP88-204ENST00000572290 IQGAP1P46940 1657 aa30.24■■■□□ 2.43
NUP88-204ENST00000572290 CHGAP10645 457 aaKnown RBP30.23■■■□□ 2.43
NUP88-204ENST00000572290 CPS1P31327 1500 aa30.18■■■□□ 2.42
NUP88-204ENST00000572290 HDGFP51858 240 aaKnown RBP30.17■■■□□ 2.42
NUP88-204ENST00000572290 SLC4A1APQ9BWU0 796 aaKnown RBP30.15■■■□□ 2.42
NUP88-204ENST00000572290 TMEM131LA2VDJ0 1609 aa30.14■■■□□ 2.42
NUP88-204ENST00000572290 RIMS2Q9UQ26 1411 aa30.14■■■□□ 2.42
NUP88-204ENST00000572290 ZFYVE9O95405 1425 aa30.13■■■□□ 2.41
NUP88-204ENST00000572290 PPP1R15AO75807 674 aaPredicted RBP30.12■■■□□ 2.41
NUP88-204ENST00000572290 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.11■■■□□ 2.41
NUP88-204ENST00000572290 BCANQ96GW7 911 aa30.11■■■□□ 2.41
NUP88-204ENST00000572290 SLC26A8Q96RN1 970 aa30.09■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms