RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CECR2Q9BXF3 1484 aa10.67□□□□□ -0.7
VPS53-212ENST00000572259 KHSRPQ92945 711 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-212ENST00000572259 MAP3K7O43318 606 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 RANGAP1P46060 587 aaPredicted RBP10.64□□□□□ -0.71
VPS53-212ENST00000572259 TYW1BQ6NUM6 668 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 GPR153Q6NV75 609 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 CDAN1Q8IWY9 1227 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 RBM33Q96EV2 1170 aaKnown RBP10.64□□□□□ -0.71
VPS53-212ENST00000572259 JPH4Q96JJ6 628 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 PCDHGA10Q9Y5H3 936 aa10.64□□□□□ -0.71
VPS53-212ENST00000572259 FCHSD2O94868 740 aa10.63□□□□□ -0.71
VPS53-212ENST00000572259 FBXW7Q969H0 707 aa10.63□□□□□ -0.71
VPS53-212ENST00000572259 KDM4FA0A1W2PPD8 638 aa10.62□□□□□ -0.71
VPS53-212ENST00000572259 EN1Q05925 392 aaPredicted RBP10.62□□□□□ -0.71
VPS53-212ENST00000572259 ZNF454Q8N9F8 522 aa10.62□□□□□ -0.71
VPS53-212ENST00000572259 PRIM1P49642 420 aaKnown RBP10.61□□□□□ -0.71
VPS53-212ENST00000572259 FOSBP53539 338 aa10.6□□□□□ -0.71
VPS53-212ENST00000572259 HIC1Q14526 733 aa10.6□□□□□ -0.71
VPS53-212ENST00000572259 AK7Q96M32 723 aa10.6□□□□□ -0.71
VPS53-212ENST00000572259 GNPATO15228 680 aa10.59□□□□□ -0.71
VPS53-212ENST00000572259 GPR37O15354 613 aa10.59□□□□□ -0.71
VPS53-212ENST00000572259 ZDHHC16Q969W1 377 aa10.59□□□□□ -0.71
VPS53-212ENST00000572259 PTGDRQ13258 359 aa10.57□□□□□ -0.72
VPS53-212ENST00000572259 LHX6Q9UPM6 363 aa10.57□□□□□ -0.72
VPS53-212ENST00000572259 PSDA5PKW4 1024 aaPredicted RBP10.56□□□□□ -0.72
VPS53-212ENST00000572259 MINK1Q8N4C8 1332 aaPredicted RBP10.56□□□□□ -0.72
VPS53-212ENST00000572259 HOXB1P14653 301 aaPredicted RBP10.55□□□□□ -0.72
VPS53-212ENST00000572259 MMRN1Q13201 1228 aa10.55□□□□□ -0.72
VPS53-212ENST00000572259 NEUROD2Q15784 382 aa10.55□□□□□ -0.72
VPS53-212ENST00000572259 TSR1Q2NL82 804 aaKnown RBP10.55□□□□□ -0.72
VPS53-212ENST00000572259 PPP4R3BQ5MIZ7 849 aa10.55□□□□□ -0.72
VPS53-212ENST00000572259 CDHR5Q9HBB8 845 aa10.55□□□□□ -0.72
VPS53-212ENST00000572259 BAZ1AQ9NRL2 1556 aaPredicted RBP10.55□□□□□ -0.72
VPS53-212ENST00000572259 MAP2K5Q13163 448 aa10.54□□□□□ -0.72
VPS53-212ENST00000572259 C6orf132Q5T0Z8 1188 aa10.54□□□□□ -0.72
VPS53-212ENST00000572259 TMEM132AQ24JP5 1023 aa10.53□□□□□ -0.72
VPS53-212ENST00000572259 SMARCA4P51532 1647 aa10.53□□□□□ -0.72
VPS53-212ENST00000572259 BRPF1P55201 1214 aaPredicted RBP10.52□□□□□ -0.73
VPS53-212ENST00000572259 CERKQ8TCT0 537 aa10.52□□□□□ -0.73
VPS53-212ENST00000572259 ADAM33Q9BZ11 813 aa10.52□□□□□ -0.73
VPS53-212ENST00000572259 SMARCA2P51531 1590 aa10.52□□□□□ -0.73
VPS53-212ENST00000572259 IRF6O14896 467 aa10.51□□□□□ -0.73
VPS53-212ENST00000572259 FECHP22830 423 aa10.51□□□□□ -0.73
VPS53-212ENST00000572259 NPDC1Q9NQX5 325 aaPredicted RBP10.51□□□□□ -0.73
VPS53-212ENST00000572259 NCAPD3P42695 1498 aa10.5□□□□□ -0.73
VPS53-212ENST00000572259 TRIM66O15016 1216 aa10.5□□□□□ -0.73
VPS53-212ENST00000572259 ATAD2BQ9ULI0 1458 aa10.49□□□□□ -0.73
VPS53-212ENST00000572259 CCDC102AQ96A19 550 aa10.49□□□□□ -0.73
VPS53-212ENST00000572259 PDE4DQ08499 809 aa10.46□□□□□ -0.73
VPS53-212ENST00000572259 C14orf37Q86TY3 774 aa10.46□□□□□ -0.73
VPS53-212ENST00000572259 BCL2L12Q9HB09 334 aa10.46□□□□□ -0.73
VPS53-212ENST00000572259 PTPREP23469 700 aa10.45□□□□□ -0.74
VPS53-212ENST00000572259 SPNS2Q8IVW8 549 aa10.45□□□□□ -0.74
VPS53-212ENST00000572259 ERBB3P21860 1342 aa10.44□□□□□ -0.74
VPS53-212ENST00000572259 KCNH8Q96L42 1107 aa10.44□□□□□ -0.74
VPS53-212ENST00000572259 MROH2BQ7Z745 1585 aa10.43□□□□□ -0.74
VPS53-212ENST00000572259 HMGXB3Q12766 1538 aa10.43□□□□□ -0.74
VPS53-212ENST00000572259 PEG3Q9GZU2 1588 aa10.43□□□□□ -0.74
VPS53-212ENST00000572259 BAZ1BQ9UIG0 1483 aaKnown RBP10.42□□□□□ -0.74
VPS53-212ENST00000572259 ST18O60284 1047 aa10.42□□□□□ -0.74
VPS53-212ENST00000572259 PRSS12P56730 875 aa10.42□□□□□ -0.74
VPS53-212ENST00000572259 PADI6Q6TGC4 694 aa10.42□□□□□ -0.74
VPS53-212ENST00000572259 CDCA7LQ96GN5 454 aa10.41□□□□□ -0.74
VPS53-212ENST00000572259 EMP3P54852 163 aa10.4□□□□□ -0.74
VPS53-212ENST00000572259 GPBP1L1Q9HC44 474 aaPredicted RBP10.4□□□□□ -0.74
VPS53-212ENST00000572259 RBM27Q9P2N5 1060 aaKnown RBP10.4□□□□□ -0.74
VPS53-212ENST00000572259 PPP1R3GB7ZBB8 358 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 OATP04181 439 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 COL9A1P20849 921 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 TTLL12Q14166 644 aaPredicted RBP10.39□□□□□ -0.75
VPS53-212ENST00000572259 VARS2Q5ST30 1063 aaKnown RBP10.39□□□□□ -0.75
VPS53-212ENST00000572259 KCNK17Q96T54 332 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 KDM4CQ9H3R0 1056 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 PODXL2Q9NZ53 605 aa10.39□□□□□ -0.75
VPS53-212ENST00000572259 AMHR2Q16671 573 aa10.38□□□□□ -0.75
VPS53-212ENST00000572259 FAM161AQ3B820 660 aa10.37□□□□□ -0.75
VPS53-212ENST00000572259 MARVELD3Q96A59 401 aa10.37□□□□□ -0.75
VPS53-212ENST00000572259 TTC13Q8NBP0 860 aa10.35□□□□□ -0.75
VPS53-212ENST00000572259 RBM46Q8TBY0 533 aaKnown RBP10.35□□□□□ -0.75
VPS53-212ENST00000572259 ADGRG1Q9Y653 693 aa10.35□□□□□ -0.75
VPS53-212ENST00000572259 FAM205CA6NFA0 338 aa10.34□□□□□ -0.75
VPS53-212ENST00000572259 PACS2Q86VP3 889 aa10.34□□□□□ -0.75
VPS53-212ENST00000572259 WIZO95785 1651 aa10.34□□□□□ -0.75
VPS53-212ENST00000572259 ARHGAP33O14559 1287 aa10.33□□□□□ -0.76
VPS53-212ENST00000572259 CLCN1P35523 988 aa10.33□□□□□ -0.76
VPS53-212ENST00000572259 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
VPS53-212ENST00000572259 PARP9Q8IXQ6 854 aa10.33□□□□□ -0.76
VPS53-212ENST00000572259 IL27Q8NEV9 243 aa10.33□□□□□ -0.76
VPS53-212ENST00000572259 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
VPS53-212ENST00000572259 TRIM6-TRIM34B2RNG4 842 aa10.32□□□□□ -0.76
VPS53-212ENST00000572259 MDM2Q00987 491 aaPredicted RBP10.32□□□□□ -0.76
VPS53-212ENST00000572259 PXYLP1Q8TE99 480 aa10.32□□□□□ -0.76
VPS53-212ENST00000572259 TSKSQ9UJT2 592 aa10.32□□□□□ -0.76
VPS53-212ENST00000572259 PSEN2P49810 448 aa10.31□□□□□ -0.76
VPS53-212ENST00000572259 NBPF26B4DH59 902 aa10.3□□□□□ -0.76
VPS53-212ENST00000572259 GIGYF2Q6Y7W6 1299 aaKnown RBP10.3□□□□□ -0.76
VPS53-212ENST00000572259 PHOX2BQ99453 314 aa10.3□□□□□ -0.76
VPS53-212ENST00000572259 GPCPD1Q9NPB8 672 aa10.3□□□□□ -0.76
VPS53-212ENST00000572259 FAM198AQ9UFP1 575 aa10.3□□□□□ -0.76
VPS53-212ENST00000572259 PNMA3Q9UL41 463 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms