RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 KDM5DQ9BY66 1539 aa15.31■□□□□ 0.04
CIITA-207ENST00000571545 MYO3AQ8NEV4 1616 aa15.31■□□□□ 0.04
CIITA-207ENST00000571545 EIF2AK4Q9P2K8 1649 aaKnown RBP15.28■□□□□ 0.04
CIITA-207ENST00000571545 PTPRTO14522 1441 aa15.28■□□□□ 0.04
CIITA-207ENST00000571545 PTPRKQ15262 1439 aa15.27■□□□□ 0.04
CIITA-207ENST00000571545 NCOA1Q15788 1441 aa15.27■□□□□ 0.04
CIITA-207ENST00000571545 ZC3H13Q5T200 1668 aaKnown RBP15.27■□□□□ 0.03
CIITA-207ENST00000571545 CEP170BQ9Y4F5 1589 aaPredicted RBP15.27■□□□□ 0.03
CIITA-207ENST00000571545 KIF3BO15066 747 aa15.26■□□□□ 0.03
CIITA-207ENST00000571545 PLA2R1Q13018 1463 aa15.26■□□□□ 0.03
CIITA-207ENST00000571545 SHANK2Q9UPX8 1470 aa15.26■□□□□ 0.03
CIITA-207ENST00000571545 RNF17Q9BXT8 1623 aaKnown RBP15.25■□□□□ 0.03
CIITA-207ENST00000571545 KANK4Q5T7N3 995 aaPredicted RBP15.25■□□□□ 0.03
CIITA-207ENST00000571545 CROCC2H7BZ55 1655 aa15.25■□□□□ 0.03
CIITA-207ENST00000571545 CAMSAP1Q5T5Y3 1602 aa15.25■□□□□ 0.03
CIITA-207ENST00000571545 PZPP20742 1482 aa15.24■□□□□ 0.03
CIITA-207ENST00000571545 PTPN23Q9H3S7 1636 aa15.24■□□□□ 0.03
CIITA-207ENST00000571545 DUOX2Q9NRD8 1548 aa15.22■□□□□ 0.03
CIITA-207ENST00000571545 WASHC2CQ9Y4E1 1318 aa15.22■□□□□ 0.03
CIITA-207ENST00000571545 A2ML1A8K2U0 1454 aa15.22■□□□□ 0.03
CIITA-207ENST00000571545 CERKQ8TCT0 537 aa15.22■□□□□ 0.03
CIITA-207ENST00000571545 PKD2Q13563 968 aa15.2■□□□□ 0.02
CIITA-207ENST00000571545 DNMT1P26358 1616 aaKnown RBP15.2■□□□□ 0.02
CIITA-207ENST00000571545 TCOF1Q13428 1488 aaKnown RBP15.2■□□□□ 0.02
CIITA-207ENST00000571545 FGD6Q6ZV73 1430 aa15.19■□□□□ 0.02
CIITA-207ENST00000571545 TNRQ92752 1358 aa15.19■□□□□ 0.02
CIITA-207ENST00000571545 NLRP1Q9C000 1473 aa15.19■□□□□ 0.02
CIITA-207ENST00000571545 ERBINQ96RT1 1412 aa15.18■□□□□ 0.02
CIITA-207ENST00000571545 IQSEC2Q5JU85 1478 aa15.18■□□□□ 0.02
CIITA-207ENST00000571545 ABCC3O15438 1527 aa15.17■□□□□ 0.02
CIITA-207ENST00000571545 KIF15Q9NS87 1388 aa15.16■□□□□ 0.02
CIITA-207ENST00000571545 POLR1AO95602 1720 aaPredicted RBP15.16■□□□□ 0.02
CIITA-207ENST00000571545 PRDM15P57071 1507 aaPredicted RBP15.16■□□□□ 0.02
CIITA-207ENST00000571545 DAPK1P53355 1430 aa15.16■□□□□ 0.02
CIITA-207ENST00000571545 ABCC5O15440 1437 aa15.15■□□□□ 0.02
CIITA-207ENST00000571545 MROH1Q8NDA8 1641 aa15.14■□□□□ 0.01
CIITA-207ENST00000571545 ANKRD30AQ9BXX3 1397 aa15.13■□□□□ 0.01
CIITA-207ENST00000571545 SPATA31D1Q6ZQQ2 1576 aa15.13■□□□□ 0.01
CIITA-207ENST00000571545 CEP152O94986 1710 aa15.12■□□□□ 0.01
CIITA-207ENST00000571545 UGGT1Q9NYU2 1555 aa15.12■□□□□ 0.01
CIITA-207ENST00000571545 DEPDC5O75140 1603 aa15.12■□□□□ 0.01
CIITA-207ENST00000571545 LTBP4Q8N2S1 1624 aa15.11■□□□□ 0.01
CIITA-207ENST00000571545 KANK1Q14678 1352 aa15.11■□□□□ 0.01
CIITA-207ENST00000571545 ERVK-7P63135 1459 aa15.1■□□□□ 0.01
CIITA-207ENST00000571545 THEMISQ8N1K5 641 aaPredicted RBP15.1■□□□□ 0.01
CIITA-207ENST00000571545 NCKAP5LQ9HCH0 1330 aa15.1■□□□□ 0.01
CIITA-207ENST00000571545 ARHGAP31Q2M1Z3 1444 aa15.09■□□□□ 0.01
CIITA-207ENST00000571545 FBXO31Q5XUX0 539 aaPredicted RBP15.09■□□□□ 0.01
CIITA-207ENST00000571545 ADGRL2O95490 1459 aa15.08■□□□□ 0.01
CIITA-207ENST00000571545 RRP7BPQ9NSQ0 103 aa15.07■□□□□ 0
CIITA-207ENST00000571545 ANKLE2Q86XL3 938 aa15.06■□□□□ 0
CIITA-207ENST00000571545 NEURL4Q96JN8 1562 aa15.06■□□□□ 0
CIITA-207ENST00000571545 CPS1P31327 1500 aa15.05■□□□□ -0
CIITA-207ENST00000571545 LMTK2Q8IWU2 1503 aa15.05■□□□□ -0
CIITA-207ENST00000571545 MED14O60244 1454 aa15.04■□□□□ -0
CIITA-207ENST00000571545 IQGAP1P46940 1657 aa15.03■□□□□ -0
CIITA-207ENST00000571545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.03■□□□□ -0
CIITA-207ENST00000571545 ZNF335Q9H4Z2 1342 aaPredicted RBP15.03■□□□□ -0
CIITA-207ENST00000571545 UBR1Q8IWV7 1749 aa15.03■□□□□ -0
CIITA-207ENST00000571545 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
CIITA-207ENST00000571545 VWDEQ8N2E2 1590 aa15.02■□□□□ -0
CIITA-207ENST00000571545 CFAP65Q6ZU64 1925 aaKnown RBP15.02■□□□□ -0
CIITA-207ENST00000571545 FAM50AQ14320 339 aaKnown RBP15.02■□□□□ -0
CIITA-207ENST00000571545 NPHP4O75161 1426 aaPredicted RBP15.01□□□□□ -0.01
CIITA-207ENST00000571545 CHIC2Q9UKJ5 165 aa15□□□□□ -0.01
CIITA-207ENST00000571545 EFCAB6Q5THR3 1501 aa15□□□□□ -0.01
CIITA-207ENST00000571545 ANKRD50Q9ULJ7 1429 aa15□□□□□ -0.01
CIITA-207ENST00000571545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.99□□□□□ -0.01
CIITA-207ENST00000571545 RPRD2Q5VT52 1461 aaKnown RBP14.99□□□□□ -0.01
CIITA-207ENST00000571545 SLIT1O75093 1534 aa14.98□□□□□ -0.01
CIITA-207ENST00000571545 SCAF11Q99590 1463 aaKnown RBP14.97□□□□□ -0.01
CIITA-207ENST00000571545 SYNMO15061 1565 aa14.97□□□□□ -0.01
CIITA-207ENST00000571545 ROCK1Q13464 1354 aa14.97□□□□□ -0.01
CIITA-207ENST00000571545 TET3O43151 1660 aa14.96□□□□□ -0.01
CIITA-207ENST00000571545 PIK3C2BO00750 1634 aa14.95□□□□□ -0.02
CIITA-207ENST00000571545 ARHGAP23Q9P227 1491 aa14.95□□□□□ -0.02
CIITA-207ENST00000571545 UNC13BO14795 1591 aa14.95□□□□□ -0.02
CIITA-207ENST00000571545 EID1Q9Y6B2 187 aa14.95□□□□□ -0.02
CIITA-207ENST00000571545 GCC2Q8IWJ2 1684 aa14.95□□□□□ -0.02
CIITA-207ENST00000571545 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
CIITA-207ENST00000571545 UBAP1LF5GYI3 381 aa14.93□□□□□ -0.02
CIITA-207ENST00000571545 NOS1P29475 1434 aa14.92□□□□□ -0.02
CIITA-207ENST00000571545 ADGRB3O60242 1522 aa14.92□□□□□ -0.02
CIITA-207ENST00000571545 TMEM2Q9UHN6 1383 aa14.91□□□□□ -0.02
CIITA-207ENST00000571545 SLC52A1Q9NWF4 448 aa14.91□□□□□ -0.02
CIITA-207ENST00000571545 TOM1O60784 492 aa14.9□□□□□ -0.02
CIITA-207ENST00000571545 IQGAP3Q86VI3 1631 aa14.89□□□□□ -0.03
CIITA-207ENST00000571545 TXNDC2Q86VQ3 553 aa14.88□□□□□ -0.03
CIITA-207ENST00000571545 IDI1Q13907 227 aa14.86□□□□□ -0.03
CIITA-207ENST00000571545 HDGFP51858 240 aaKnown RBP14.85□□□□□ -0.03
CIITA-207ENST00000571545 E9PCH4 1651 aa14.84□□□□□ -0.03
CIITA-207ENST00000571545 STRCP1A6NGW2 1772 aa14.84□□□□□ -0.03
CIITA-207ENST00000571545 LRRC7Q96NW7 1537 aa14.84□□□□□ -0.03
CIITA-207ENST00000571545 LTKP29376 864 aa14.84□□□□□ -0.03
CIITA-207ENST00000571545 RRBP1Q9P2E9 1410 aaKnown RBP14.83□□□□□ -0.03
CIITA-207ENST00000571545 SCAF1Q9H7N4 1312 aaKnown RBP14.82□□□□□ -0.04
CIITA-207ENST00000571545 DISP3Q9P2K9 1392 aa14.82□□□□□ -0.04
CIITA-207ENST00000571545 TMEM131LA2VDJ0 1609 aa14.81□□□□□ -0.04
CIITA-207ENST00000571545 POTEDQ86YR6 584 aa14.81□□□□□ -0.04
CIITA-207ENST00000571545 NUP155O75694 1391 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms