RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 RNF17Q9BXT8 1623 aaKnown RBP34.98■■■■□ 3.19
RAB40C-212ENST00000569575 DEPDC5O75140 1603 aa34.95■■■■□ 3.18
RAB40C-212ENST00000569575 KANK1Q14678 1352 aa34.92■■■■□ 3.18
RAB40C-212ENST00000569575 RAB3GAP2Q9H2M9 1393 aa34.92■■■■□ 3.18
RAB40C-212ENST00000569575 SIGLEC1Q9BZZ2 1709 aa34.91■■■■□ 3.18
RAB40C-212ENST00000569575 UNC13BO14795 1591 aa34.91■■■■□ 3.18
RAB40C-212ENST00000569575 PRDM15P57071 1507 aaPredicted RBP34.89■■■■□ 3.18
RAB40C-212ENST00000569575 GGT6Q6P531 493 aa34.88■■■■□ 3.17
RAB40C-212ENST00000569575 KDM5DQ9BY66 1539 aa34.86■■■■□ 3.17
RAB40C-212ENST00000569575 CNTLNQ9NXG0 1405 aa34.83■■■■□ 3.17
RAB40C-212ENST00000569575 MROH1Q8NDA8 1641 aa34.82■■■■□ 3.16
RAB40C-212ENST00000569575 VWDEQ8N2E2 1590 aa34.82■■■■□ 3.16
RAB40C-212ENST00000569575 ESF1Q9H501 851 aaKnown RBP34.81■■■■□ 3.16
RAB40C-212ENST00000569575 NUP155O75694 1391 aa34.81■■■■□ 3.16
RAB40C-212ENST00000569575 ZC3H13Q5T200 1668 aaKnown RBP34.81■■■■□ 3.16
RAB40C-212ENST00000569575 WASHC2CQ9Y4E1 1318 aa34.79■■■■□ 3.16
RAB40C-212ENST00000569575 LMTK2Q8IWU2 1503 aa34.77■■■■□ 3.16
RAB40C-212ENST00000569575 TRIM52Q96A61 297 aa34.77■■■■□ 3.16
RAB40C-212ENST00000569575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.77■■■■□ 3.16
RAB40C-212ENST00000569575 IQGAP3Q86VI3 1631 aa34.77■■■■□ 3.16
RAB40C-212ENST00000569575 MLECQ14165 292 aa34.76■■■■□ 3.16
RAB40C-212ENST00000569575 ADAMTSL3P82987 1691 aa34.75■■■■□ 3.15
RAB40C-212ENST00000569575 ABCC3O15438 1527 aa34.71■■■■□ 3.15
RAB40C-212ENST00000569575 MROH2AA6NES4 1674 aa34.69■■■■□ 3.14
RAB40C-212ENST00000569575 FER1L4A9Z1Z3 1794 aa34.68■■■■□ 3.14
RAB40C-212ENST00000569575 ARHGAP31Q2M1Z3 1444 aa34.67■■■■□ 3.14
RAB40C-212ENST00000569575 TET3O43151 1660 aa34.66■■■■□ 3.14
RAB40C-212ENST00000569575 SLC4A1APQ9BWU0 796 aaKnown RBP34.64■■■■□ 3.14
RAB40C-212ENST00000569575 RPRD2Q5VT52 1461 aaKnown RBP34.64■■■■□ 3.14
RAB40C-212ENST00000569575 MPHOSPH9Q99550 1183 aa34.63■■■■□ 3.13
RAB40C-212ENST00000569575 PZPP20742 1482 aa34.63■■■■□ 3.13
RAB40C-212ENST00000569575 CLTCQ00610 1675 aaKnown RBP34.62■■■■□ 3.13
RAB40C-212ENST00000569575 CEP152O94986 1710 aa34.61■■■■□ 3.13
RAB40C-212ENST00000569575 ZMYM3Q14202 1370 aa34.61■■■■□ 3.13
RAB40C-212ENST00000569575 CAMSAP1Q5T5Y3 1602 aa34.6■■■■□ 3.13
RAB40C-212ENST00000569575 MADDQ8WXG6 1647 aa34.6■■■■□ 3.13
RAB40C-212ENST00000569575 EFCAB6Q5THR3 1501 aa34.6■■■■□ 3.13
RAB40C-212ENST00000569575 PKD2Q13563 968 aa34.52■■■■□ 3.12
RAB40C-212ENST00000569575 RIMS1Q86UR5 1692 aaKnown RBP34.51■■■■□ 3.12
RAB40C-212ENST00000569575 NPATQ14207 1427 aa34.5■■■■□ 3.11
RAB40C-212ENST00000569575 E9PCH4 1651 aa34.48■■■■□ 3.11
RAB40C-212ENST00000569575 KDM4FA0A1W2PPD8 638 aa34.48■■■■□ 3.11
RAB40C-212ENST00000569575 PTPRMP28827 1452 aa34.46■■■■□ 3.11
RAB40C-212ENST00000569575 C3P01024 1663 aa34.45■■■■□ 3.11
RAB40C-212ENST00000569575 DHX57Q6P158 1386 aaKnown RBP34.43■■■■□ 3.1
RAB40C-212ENST00000569575 PTPRTO14522 1441 aa34.42■■■■□ 3.1
RAB40C-212ENST00000569575 NOS1P29475 1434 aa34.41■■■■□ 3.1
RAB40C-212ENST00000569575 SPATA31D1Q6ZQQ2 1576 aa34.4■■■■□ 3.1
RAB40C-212ENST00000569575 SETD1BQ9UPS6 1966 aaKnown RBP34.4■■■■□ 3.1
RAB40C-212ENST00000569575 ERVK-7P63135 1459 aa34.39■■■■□ 3.1
RAB40C-212ENST00000569575 PREX1Q8TCU6 1659 aa34.38■■■■□ 3.09
RAB40C-212ENST00000569575 CLSPNQ9HAW4 1339 aa34.38■■■■□ 3.09
RAB40C-212ENST00000569575 SLC52A1Q9NWF4 448 aa34.37■■■■□ 3.09
RAB40C-212ENST00000569575 SPHKAPQ2M3C7 1700 aa34.35■■■■□ 3.09
RAB40C-212ENST00000569575 TRPM2O94759 1503 aa34.32■■■■□ 3.08
RAB40C-212ENST00000569575 CEBPAP49715 358 aaPredicted RBP34.32■■■■□ 3.08
RAB40C-212ENST00000569575 FBXO31Q5XUX0 539 aaPredicted RBP34.32■■■■□ 3.08
RAB40C-212ENST00000569575 ANKRD30BQ9BXX2 1392 aa34.32■■■■□ 3.08
RAB40C-212ENST00000569575 CFAP65Q6ZU64 1925 aaKnown RBP34.32■■■■□ 3.08
RAB40C-212ENST00000569575 TNRQ92752 1358 aa34.31■■■■□ 3.08
RAB40C-212ENST00000569575 NLRP1Q9C000 1473 aa34.27■■■■□ 3.08
RAB40C-212ENST00000569575 PLA2R1Q13018 1463 aa34.27■■■■□ 3.08
RAB40C-212ENST00000569575 FOXD1Q16676 465 aa34.25■■■■□ 3.07
RAB40C-212ENST00000569575 CCDC144AA2RUR9 1427 aa34.24■■■■□ 3.07
RAB40C-212ENST00000569575 SYNMO15061 1565 aa34.23■■■■□ 3.07
RAB40C-212ENST00000569575 PIK3C2BO00750 1634 aa34.22■■■■□ 3.07
RAB40C-212ENST00000569575 CCER1Q8TC90 406 aaPredicted RBP34.2■■■■□ 3.07
RAB40C-212ENST00000569575 KDM5AP29375 1690 aaKnown RBP34.18■■■■□ 3.06
RAB40C-212ENST00000569575 IDI1Q13907 227 aa34.17■■■■□ 3.06
RAB40C-212ENST00000569575 NEURL4Q96JN8 1562 aa34.15■■■■□ 3.06
RAB40C-212ENST00000569575 PLPPR3Q6T4P5 718 aa34.15■■■■□ 3.06
RAB40C-212ENST00000569575 UHRF1BP1Q6BDS2 1440 aa34.13■■■■□ 3.05
RAB40C-212ENST00000569575 A2ML1A8K2U0 1454 aa34.13■■■■□ 3.05
RAB40C-212ENST00000569575 MYO3AQ8NEV4 1616 aa34.12■■■■□ 3.05
RAB40C-212ENST00000569575 CLTCL1P53675 1640 aa34.11■■■■□ 3.05
RAB40C-212ENST00000569575 KIF1BO60333 1816 aa34.11■■■■□ 3.05
RAB40C-212ENST00000569575 ZNF142P52746 1687 aaPredicted RBP34.09■■■■□ 3.05
RAB40C-212ENST00000569575 STAG3Q9UJ98 1225 aa34.07■■■■□ 3.04
RAB40C-212ENST00000569575 CEP170BQ9Y4F5 1589 aaPredicted RBP34.06■■■■□ 3.04
RAB40C-212ENST00000569575 THEMISQ8N1K5 641 aaPredicted RBP34.06■■■■□ 3.04
RAB40C-212ENST00000569575 ADGRB3O60242 1522 aa34.04■■■■□ 3.04
RAB40C-212ENST00000569575 UGGT1Q9NYU2 1555 aa34.04■■■■□ 3.04
RAB40C-212ENST00000569575 STAC3Q96MF2 364 aa34.03■■■■□ 3.04
RAB40C-212ENST00000569575 TIMELESSQ9UNS1 1208 aa34.03■■■■□ 3.04
RAB40C-212ENST00000569575 TMEM131LA2VDJ0 1609 aa34.02■■■■□ 3.04
RAB40C-212ENST00000569575 RPGRIP1LQ68CZ1 1315 aa34.02■■■■□ 3.04
RAB40C-212ENST00000569575 HDGFP51858 240 aaKnown RBP34.01■■■■□ 3.03
RAB40C-212ENST00000569575 SPATA31E1Q6ZUB1 1445 aa34■■■■□ 3.03
RAB40C-212ENST00000569575 UBR1Q8IWV7 1749 aa34■■■■□ 3.03
RAB40C-212ENST00000569575 CHGAP10645 457 aaKnown RBP33.96■■■■□ 3.03
RAB40C-212ENST00000569575 SIN3AQ96ST3 1273 aa33.95■■■■□ 3.03
RAB40C-212ENST00000569575 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.92■■■■□ 3.02
RAB40C-212ENST00000569575 NEUROD1Q13562 356 aa33.91■■■■□ 3.02
RAB40C-212ENST00000569575 AEBP2Q6ZN18 517 aaPredicted RBP33.91■■■■□ 3.02
RAB40C-212ENST00000569575 SLIT1O75093 1534 aa33.9■■■■□ 3.02
RAB40C-212ENST00000569575 TMEM2Q9UHN6 1383 aa33.9■■■■□ 3.02
RAB40C-212ENST00000569575 LMTK3Q96Q04 1460 aa33.89■■■■□ 3.02
RAB40C-212ENST00000569575 ZNF326Q5BKZ1 582 aaKnown RBP33.89■■■■□ 3.02
RAB40C-212ENST00000569575 ARHGAP23Q9P227 1491 aa33.88■■■■□ 3.01
RAB40C-212ENST00000569575 TONSLQ96HA7 1378 aa33.86■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms