RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 KIF3BO15066 747 aa29.21■■■□□ 2.27
SMPD3-209ENST00000567223 RNF17Q9BXT8 1623 aaKnown RBP29.2■■■□□ 2.27
SMPD3-209ENST00000567223 FGD6Q6ZV73 1430 aa29.2■■■□□ 2.26
SMPD3-209ENST00000567223 MYO3AQ8NEV4 1616 aa29.19■■■□□ 2.26
SMPD3-209ENST00000567223 CROCC2H7BZ55 1655 aa29.18■■■□□ 2.26
SMPD3-209ENST00000567223 PTPRTO14522 1441 aa29.17■■■□□ 2.26
SMPD3-209ENST00000567223 NCOA1Q15788 1441 aa29.17■■■□□ 2.26
SMPD3-209ENST00000567223 PZPP20742 1482 aa29.16■■■□□ 2.26
SMPD3-209ENST00000567223 DUOX2Q9NRD8 1548 aa29.15■■■□□ 2.26
SMPD3-209ENST00000567223 ABCC5O15440 1437 aa29.14■■■□□ 2.26
SMPD3-209ENST00000567223 DNMT1P26358 1616 aaKnown RBP29.14■■■□□ 2.26
SMPD3-209ENST00000567223 FBXO41Q8TF61 875 aa29.14■■■□□ 2.26
SMPD3-209ENST00000567223 ZC3H13Q5T200 1668 aaKnown RBP29.13■■■□□ 2.25
SMPD3-209ENST00000567223 CEP170BQ9Y4F5 1589 aaPredicted RBP29.13■■■□□ 2.25
SMPD3-209ENST00000567223 PLA2R1Q13018 1463 aa29.12■■■□□ 2.25
SMPD3-209ENST00000567223 DAPK1P53355 1430 aa29.11■■■□□ 2.25
SMPD3-209ENST00000567223 CAMSAP1Q5T5Y3 1602 aa29.09■■■□□ 2.25
SMPD3-209ENST00000567223 WASHC2CQ9Y4E1 1318 aa29.09■■■□□ 2.25
SMPD3-209ENST00000567223 ERBINQ96RT1 1412 aa29.08■■■□□ 2.25
SMPD3-209ENST00000567223 MROH1Q8NDA8 1641 aa29.08■■■□□ 2.25
SMPD3-209ENST00000567223 A2ML1A8K2U0 1454 aa29.06■■■□□ 2.24
SMPD3-209ENST00000567223 ABCC3O15438 1527 aa29.05■■■□□ 2.24
SMPD3-209ENST00000567223 KIF15Q9NS87 1388 aa29.05■■■□□ 2.24
SMPD3-209ENST00000567223 PRDM15P57071 1507 aaPredicted RBP29.03■■■□□ 2.24
SMPD3-209ENST00000567223 TNRQ92752 1358 aa29.01■■■□□ 2.24
SMPD3-209ENST00000567223 PKD2Q13563 968 aa29■■■□□ 2.23
SMPD3-209ENST00000567223 CERKQ8TCT0 537 aa29■■■□□ 2.23
SMPD3-209ENST00000567223 NLRP1Q9C000 1473 aa28.99■■■□□ 2.23
SMPD3-209ENST00000567223 DEPDC5O75140 1603 aa28.98■■■□□ 2.23
SMPD3-209ENST00000567223 ADGRL2O95490 1459 aa28.98■■■□□ 2.23
SMPD3-209ENST00000567223 SPATA31D1Q6ZQQ2 1576 aa28.98■■■□□ 2.23
SMPD3-209ENST00000567223 ANKRD30AQ9BXX3 1397 aa28.97■■■□□ 2.23
SMPD3-209ENST00000567223 FBXO31Q5XUX0 539 aaPredicted RBP28.96■■■□□ 2.23
SMPD3-209ENST00000567223 ARHGAP31Q2M1Z3 1444 aa28.94■■■□□ 2.22
SMPD3-209ENST00000567223 LTBP4Q8N2S1 1624 aa28.91■■■□□ 2.22
SMPD3-209ENST00000567223 RRP7BPQ9NSQ0 103 aa28.91■■■□□ 2.22
SMPD3-209ENST00000567223 ERVK-7P63135 1459 aa28.9■■■□□ 2.22
SMPD3-209ENST00000567223 IQSEC2Q5JU85 1478 aa28.9■■■□□ 2.22
SMPD3-209ENST00000567223 CEP152O94986 1710 aa28.89■■■□□ 2.22
SMPD3-209ENST00000567223 LMTK2Q8IWU2 1503 aa28.88■■■□□ 2.21
SMPD3-209ENST00000567223 VWDEQ8N2E2 1590 aa28.88■■■□□ 2.21
SMPD3-209ENST00000567223 UGGT1Q9NYU2 1555 aa28.87■■■□□ 2.21
SMPD3-209ENST00000567223 NCKAP5LQ9HCH0 1330 aa28.86■■■□□ 2.21
SMPD3-209ENST00000567223 POLR1AO95602 1720 aaPredicted RBP28.84■■■□□ 2.21
SMPD3-209ENST00000567223 THEMISQ8N1K5 641 aaPredicted RBP28.83■■■□□ 2.21
SMPD3-209ENST00000567223 KANK1Q14678 1352 aa28.82■■■□□ 2.2
SMPD3-209ENST00000567223 NEURL4Q96JN8 1562 aa28.82■■■□□ 2.2
SMPD3-209ENST00000567223 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.81■■■□□ 2.2
SMPD3-209ENST00000567223 MED14O60244 1454 aa28.79■■■□□ 2.2
SMPD3-209ENST00000567223 FAM50AQ14320 339 aaKnown RBP28.79■■■□□ 2.2
SMPD3-209ENST00000567223 CHIC2Q9UKJ5 165 aa28.79■■■□□ 2.2
SMPD3-209ENST00000567223 ANKRD50Q9ULJ7 1429 aa28.77■■■□□ 2.2
SMPD3-209ENST00000567223 ROCK1Q13464 1354 aa28.76■■■□□ 2.2
SMPD3-209ENST00000567223 ANKLE2Q86XL3 938 aa28.74■■■□□ 2.19
SMPD3-209ENST00000567223 UBR1Q8IWV7 1749 aa28.73■■■□□ 2.19
SMPD3-209ENST00000567223 EFCAB6Q5THR3 1501 aa28.73■■■□□ 2.19
SMPD3-209ENST00000567223 KDM5AP29375 1690 aaKnown RBP28.71■■■□□ 2.19
SMPD3-209ENST00000567223 ZNF335Q9H4Z2 1342 aaPredicted RBP28.7■■■□□ 2.19
SMPD3-209ENST00000567223 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.69■■■□□ 2.18
SMPD3-209ENST00000567223 RPRD2Q5VT52 1461 aaKnown RBP28.69■■■□□ 2.18
SMPD3-209ENST00000567223 SLIT1O75093 1534 aa28.69■■■□□ 2.18
SMPD3-209ENST00000567223 ARHGAP23Q9P227 1491 aa28.67■■■□□ 2.18
SMPD3-209ENST00000567223 NPHP4O75161 1426 aaPredicted RBP28.67■■■□□ 2.18
SMPD3-209ENST00000567223 NOS1P29475 1434 aa28.67■■■□□ 2.18
SMPD3-209ENST00000567223 UNC13BO14795 1591 aa28.67■■■□□ 2.18
SMPD3-209ENST00000567223 IQGAP1P46940 1657 aa28.64■■■□□ 2.18
SMPD3-209ENST00000567223 CPS1P31327 1500 aa28.64■■■□□ 2.18
SMPD3-209ENST00000567223 CFAP65Q6ZU64 1925 aaKnown RBP28.63■■■□□ 2.17
SMPD3-209ENST00000567223 TET3O43151 1660 aa28.61■■■□□ 2.17
SMPD3-209ENST00000567223 SYNMO15061 1565 aa28.61■■■□□ 2.17
SMPD3-209ENST00000567223 PIK3C2BO00750 1634 aa28.61■■■□□ 2.17
SMPD3-209ENST00000567223 RRBP1Q9P2E9 1410 aaKnown RBP28.6■■■□□ 2.17
SMPD3-209ENST00000567223 SCAF11Q99590 1463 aaKnown RBP28.59■■■□□ 2.17
SMPD3-209ENST00000567223 GCC2Q8IWJ2 1684 aa28.57■■■□□ 2.16
SMPD3-209ENST00000567223 TMEM2Q9UHN6 1383 aa28.55■■■□□ 2.16
SMPD3-209ENST00000567223 SLC52A1Q9NWF4 448 aa28.55■■■□□ 2.16
SMPD3-209ENST00000567223 IQGAP3Q86VI3 1631 aa28.54■■■□□ 2.16
SMPD3-209ENST00000567223 IDI1Q13907 227 aa28.53■■■□□ 2.16
SMPD3-209ENST00000567223 ADGRB3O60242 1522 aa28.52■■■□□ 2.16
SMPD3-209ENST00000567223 LTKP29376 864 aa28.49■■■□□ 2.15
SMPD3-209ENST00000567223 EID1Q9Y6B2 187 aa28.48■■■□□ 2.15
SMPD3-209ENST00000567223 TXNDC2Q86VQ3 553 aa28.47■■■□□ 2.15
SMPD3-209ENST00000567223 PPARGC1BQ86YN6 1023 aaKnown RBP28.45■■■□□ 2.14
SMPD3-209ENST00000567223 E9PCH4 1651 aa28.45■■■□□ 2.14
SMPD3-209ENST00000567223 STAG3Q9UJ98 1225 aa28.44■■■□□ 2.14
SMPD3-209ENST00000567223 STRCP1A6NGW2 1772 aa28.41■■■□□ 2.14
SMPD3-209ENST00000567223 UBAP1LF5GYI3 381 aa28.4■■■□□ 2.14
SMPD3-209ENST00000567223 NUP155O75694 1391 aa28.39■■■□□ 2.14
SMPD3-209ENST00000567223 ITGAEP38570 1179 aa28.39■■■□□ 2.14
SMPD3-209ENST00000567223 TMEM131LA2VDJ0 1609 aa28.39■■■□□ 2.13
SMPD3-209ENST00000567223 LRRC7Q96NW7 1537 aa28.38■■■□□ 2.13
SMPD3-209ENST00000567223 ZFYVE9O95405 1425 aa28.37■■■□□ 2.13
SMPD3-209ENST00000567223 NAIPQ13075 1403 aa28.35■■■□□ 2.13
SMPD3-209ENST00000567223 TOM1O60784 492 aa28.34■■■□□ 2.13
SMPD3-209ENST00000567223 HFM1A2PYH4 1435 aa28.31■■■□□ 2.12
SMPD3-209ENST00000567223 ALKQ9UM73 1620 aa28.31■■■□□ 2.12
SMPD3-209ENST00000567223 HDGFP51858 240 aaKnown RBP28.29■■■□□ 2.12
SMPD3-209ENST00000567223 PLEKHG1Q9ULL1 1385 aa28.28■■■□□ 2.12
SMPD3-209ENST00000567223 MYO5BQ9ULV0 1848 aa28.28■■■□□ 2.12
SMPD3-209ENST00000567223 RIMS2Q9UQ26 1411 aa28.26■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms