RNA–Protein interactions for RNA: ENST00000567111.1

E4F1-208, Transcript of E4F transcription factor 1, human

TSL 2

Gene E4F1, Length 691 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
E4F1-208	ENST00000567111	CNTLN	Q9NXG0	1405 aa		33.91	■■■■□ 3.02
E4F1-208	ENST00000567111	TRIM26	Q12899	539 aa	Predicted RBP	33.91	■■■■□ 3.02
E4F1-208	ENST00000567111	HFM1	A2PYH4	1435 aa		33.9	■■■■□ 3.02
E4F1-208	ENST00000567111	NAIP	Q13075	1403 aa		33.9	■■■■□ 3.02
E4F1-208	ENST00000567111	KANK1	Q14678	1352 aa		33.9	■■■■□ 3.02
E4F1-208	ENST00000567111	MADD	Q8WXG6	1647 aa		33.89	■■■■□ 3.02
E4F1-208	ENST00000567111	RNF17	Q9BXT8	1623 aa	Known RBP	33.87	■■■■□ 3.01
E4F1-208	ENST00000567111	FER1L4	A9Z1Z3	1794 aa		33.87	■■■■□ 3.01
E4F1-208	ENST00000567111	FAM135A	Q9P2D6	1515 aa		33.83	■■■■□ 3.01
E4F1-208	ENST00000567111	RIMS1	Q86UR5	1692 aa	Known RBP	33.82	■■■■□ 3
E4F1-208	ENST00000567111	ACIN1	Q9UKV3	1341 aa	Known RBP	33.81	■■■■□ 3
E4F1-208	ENST00000567111	GCC2	Q8IWJ2	1684 aa		33.8	■■■■□ 3
E4F1-208	ENST00000567111	PTPRM	P28827	1452 aa		33.8	■■■■□ 3
E4F1-208	ENST00000567111	SETD5	Q9C0A6	1442 aa		33.79	■■■■□ 3
E4F1-208	ENST00000567111	ZMYM3	Q14202	1370 aa		33.78	■■■■□ 3
E4F1-208	ENST00000567111	PLPPR3	Q6T4P5	718 aa		33.78	■■■■□ 3
E4F1-208	ENST00000567111	DEPDC5	O75140	1603 aa		33.77	■■■■□ 3
E4F1-208	ENST00000567111	KDM5D	Q9BY66	1539 aa		33.77	■■■■□ 3
E4F1-208	ENST00000567111	PRDM15	P57071	1507 aa	Predicted RBP	33.75	■■■□□ 2.99
E4F1-208	ENST00000567111	CLTC	Q00610	1675 aa	Known RBP	33.75	■■■□□ 2.99
E4F1-208	ENST00000567111	NUP155	O75694	1391 aa		33.74	■■■□□ 2.99
E4F1-208	ENST00000567111	TRIM52	Q96A61	297 aa		33.74	■■■□□ 2.99
E4F1-208	ENST00000567111	MROH1	Q8NDA8	1641 aa		33.74	■■■□□ 2.99
E4F1-208	ENST00000567111	CEBPA	P49715	358 aa	Predicted RBP	33.73	■■■□□ 2.99
E4F1-208	ENST00000567111	MROH2A	A6NES4	1674 aa		33.71	■■■□□ 2.99
E4F1-208	ENST00000567111	ZC3H13	Q5T200	1668 aa	Known RBP	33.71	■■■□□ 2.99
E4F1-208	ENST00000567111	ABCC3	O15438	1527 aa		33.7	■■■□□ 2.99
E4F1-208	ENST00000567111	UNC13B	O14795	1591 aa		33.69	■■■□□ 2.98
E4F1-208	ENST00000567111	HRC	P23327	699 aa		33.66	■■■□□ 2.98
E4F1-208	ENST00000567111	VWDE	Q8N2E2	1590 aa		33.65	■■■□□ 2.98
E4F1-208	ENST00000567111	CEP152	O94986	1710 aa		33.63	■■■□□ 2.97
E4F1-208	ENST00000567111	C3	P01024	1663 aa		33.63	■■■□□ 2.97
E4F1-208	ENST00000567111	LMTK2	Q8IWU2	1503 aa		33.63	■■■□□ 2.97
E4F1-208	ENST00000567111	RAB3GAP2	Q9H2M9	1393 aa		33.62	■■■□□ 2.97
E4F1-208	ENST00000567111	ARHGAP31	Q2M1Z3	1444 aa		33.6	■■■□□ 2.97
E4F1-208	ENST00000567111	PZP	P20742	1482 aa		33.58	■■■□□ 2.97
E4F1-208	ENST00000567111	CAMSAP1	Q5T5Y3	1602 aa		33.57	■■■□□ 2.97
E4F1-208	ENST00000567111	IQGAP3	Q86VI3	1631 aa		33.57	■■■□□ 2.97
E4F1-208	ENST00000567111	NPAT	Q14207	1427 aa		33.57	■■■□□ 2.96
E4F1-208	ENST00000567111	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.57	■■■□□ 2.96
E4F1-208	ENST00000567111	SETD1B	Q9UPS6	1966 aa	Known RBP	33.57	■■■□□ 2.96
E4F1-208	ENST00000567111	SLC4A1AP	Q9BWU0	796 aa	Known RBP	33.55	■■■□□ 2.96
E4F1-208	ENST00000567111	TET3	O43151	1660 aa		33.52	■■■□□ 2.96
E4F1-208	ENST00000567111	EFCAB6	Q5THR3	1501 aa		33.49	■■■□□ 2.95
E4F1-208	ENST00000567111	RPRD2	Q5VT52	1461 aa	Known RBP	33.49	■■■□□ 2.95
E4F1-208	ENST00000567111	CFAP65	Q6ZU64	1925 aa	Known RBP	33.48	■■■□□ 2.95
E4F1-208	ENST00000567111	MPHOSPH9	Q99550	1183 aa		33.48	■■■□□ 2.95
E4F1-208	ENST00000567111	TNR	Q92752	1358 aa		33.47	■■■□□ 2.95
E4F1-208	ENST00000567111	PKD2	Q13563	968 aa		33.46	■■■□□ 2.95
E4F1-208	ENST00000567111	PCGF6	Q9BYE7	350 aa		33.44	■■■□□ 2.94
E4F1-208	ENST00000567111	ERVK-7	P63135	1459 aa		33.44	■■■□□ 2.94
E4F1-208	ENST00000567111	UHRF1BP1	Q6BDS2	1440 aa		33.41	■■■□□ 2.94
E4F1-208	ENST00000567111	SPATA31D1	Q6ZQQ2	1576 aa		33.4	■■■□□ 2.94
E4F1-208	ENST00000567111	PREX1	Q8TCU6	1659 aa		33.39	■■■□□ 2.94
E4F1-208	ENST00000567111		E9PCH4	1651 aa		33.38	■■■□□ 2.93
E4F1-208	ENST00000567111	SLC52A1	Q9NWF4	448 aa		33.37	■■■□□ 2.93
E4F1-208	ENST00000567111	NOS1	P29475	1434 aa		33.36	■■■□□ 2.93
E4F1-208	ENST00000567111	NLRP1	Q9C000	1473 aa		33.33	■■■□□ 2.93
E4F1-208	ENST00000567111	IDI1	Q13907	227 aa		33.29	■■■□□ 2.92
E4F1-208	ENST00000567111	STAG3	Q9UJ98	1225 aa		33.29	■■■□□ 2.92
E4F1-208	ENST00000567111	A2ML1	A8K2U0	1454 aa		33.27	■■■□□ 2.92
E4F1-208	ENST00000567111	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.27	■■■□□ 2.92
E4F1-208	ENST00000567111	PTPRT	O14522	1441 aa		33.27	■■■□□ 2.92
E4F1-208	ENST00000567111	FOXD1	Q16676	465 aa		33.26	■■■□□ 2.91
E4F1-208	ENST00000567111	MYO3A	Q8NEV4	1616 aa		33.26	■■■□□ 2.91
E4F1-208	ENST00000567111	LMTK3	Q96Q04	1460 aa		33.25	■■■□□ 2.91
E4F1-208	ENST00000567111	SYNM	O15061	1565 aa		33.22	■■■□□ 2.91
E4F1-208	ENST00000567111	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.21	■■■□□ 2.91
E4F1-208	ENST00000567111	SPHKAP	Q2M3C7	1700 aa		33.2	■■■□□ 2.91
E4F1-208	ENST00000567111	HSPA2	P54652	639 aa		33.2	■■■□□ 2.91
E4F1-208	ENST00000567111	CHGA	P10645	457 aa	Known RBP	33.18	■■■□□ 2.9
E4F1-208	ENST00000567111	UGGT1	Q9NYU2	1555 aa		33.17	■■■□□ 2.9
E4F1-208	ENST00000567111	ZNF142	P52746	1687 aa	Predicted RBP	33.17	■■■□□ 2.9
E4F1-208	ENST00000567111	TRPM2	O94759	1503 aa		33.14	■■■□□ 2.9
E4F1-208	ENST00000567111	PLA2R1	Q13018	1463 aa		33.14	■■■□□ 2.9
E4F1-208	ENST00000567111	PIK3C2B	O00750	1634 aa		33.11	■■■□□ 2.89
E4F1-208	ENST00000567111	CCDC144A	A2RUR9	1427 aa		33.11	■■■□□ 2.89
E4F1-208	ENST00000567111	HDGF	P51858	240 aa	Known RBP	33.09	■■■□□ 2.89
E4F1-208	ENST00000567111	ANKLE2	Q86XL3	938 aa		33.08	■■■□□ 2.89
E4F1-208	ENST00000567111	ANKRD30B	Q9BXX2	1392 aa		33.07	■■■□□ 2.88
E4F1-208	ENST00000567111	KDM5A	P29375	1690 aa	Known RBP	33.07	■■■□□ 2.88
E4F1-208	ENST00000567111	UBR1	Q8IWV7	1749 aa		33.06	■■■□□ 2.88
E4F1-208	ENST00000567111	EID1	Q9Y6B2	187 aa		33.06	■■■□□ 2.88
E4F1-208	ENST00000567111	ADGRB3	O60242	1522 aa		33.04	■■■□□ 2.88
E4F1-208	ENST00000567111	CLTCL1	P53675	1640 aa		33.03	■■■□□ 2.88
E4F1-208	ENST00000567111	ZNF326	Q5BKZ1	582 aa	Known RBP	33.03	■■■□□ 2.88
E4F1-208	ENST00000567111	DHX57	Q6P158	1386 aa	Known RBP	33.02	■■■□□ 2.88
E4F1-208	ENST00000567111	DMRT2	Q9Y5R5	561 aa		33.02	■■■□□ 2.88
E4F1-208	ENST00000567111	TXNDC2	Q86VQ3	553 aa		33.01	■■■□□ 2.87
E4F1-208	ENST00000567111	TMEM2	Q9UHN6	1383 aa		33	■■■□□ 2.87
E4F1-208	ENST00000567111	TMEM131L	A2VDJ0	1609 aa		33	■■■□□ 2.87
E4F1-208	ENST00000567111	KIF1B	O60333	1816 aa		33	■■■□□ 2.87
E4F1-208	ENST00000567111	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.99	■■■□□ 2.87
E4F1-208	ENST00000567111	NCKAP5L	Q9HCH0	1330 aa		32.98	■■■□□ 2.87
E4F1-208	ENST00000567111	SLIT1	O75093	1534 aa		32.95	■■■□□ 2.87
E4F1-208	ENST00000567111	RPGRIP1L	Q68CZ1	1315 aa		32.94	■■■□□ 2.86
E4F1-208	ENST00000567111	ARHGAP23	Q9P227	1491 aa		32.93	■■■□□ 2.86
E4F1-208	ENST00000567111	PPP1R15A	O75807	674 aa	Predicted RBP	32.92	■■■□□ 2.86
E4F1-208	ENST00000567111	RGL3	Q3MIN7	710 aa		32.92	■■■□□ 2.86
E4F1-208	ENST00000567111	MYO5B	Q9ULV0	1848 aa		32.92	■■■□□ 2.86

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms